Alligator mississippiensis (American alligator): 102558160
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Entry
102558160 CDS
T03087
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102558160 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102558160 (PRPF40B)
Spliceosome [BR:
amj03041
]
Complex A
U1 snRNP components
U1 related factors
102558160 (PRPF40B)
Complex B
102558160 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
SelB-wing_2
IL3
Motif
Other DBs
NCBI-GeneID:
102558160
NCBI-ProteinID:
XP_019341989
LinkDB
All DBs
Position
Un
AA seq
923 aa
AA seq
DB search
MSAPESGSGPSGQPAPFPSAPPMMPPPFMPPPGMPPPFPPMGLPPLGPRPPAVPPMPPGL
MPPMMPPMTAPPPMGQMPAMVPPLMPGMLMPGVPAGPVPVPRAAAPGTEPLGAPPAQPAP
ALLNPLVAAVQQSVTGSSSPARDLSRKKPPWTEHKAPDGRTYYYNCDSKQSTWEKPDDLK
SKAELLLSQCPWREYKSDTGKSYYYNAQSKESRWTKPRDLDELEALIKEEEEAGKQQETP
SAASSPSLSSAATTDTEATAADEQEPLALGAVAETPEEVMPLQEDVAGSADPSRREEDER
GDAMPSAGSWSTKEEAKQAFKDLLKDKGVASNASWEQAMKMIINDLRYSALPKLSEKKQA
FNAYKAQREKEEKEEARLRAKEAREELQRFLEQHERMSSTTRYRKAEQMFGELEVWAVVP
ERDRKEIYDDVLFFLAKKEKEHAKQLRKRNIQALKNILDSMSNVSFQTTWSEAQQYLMDN
PTFAEDEDLQTLQSLSTRPGTPRQRGPCPLTPGPLADMDKEDALICFEEHIRTLEREEEE
EKEKTRLRERRQQRKNREAFQAFLDELHDKGQLHSMSTWMELYPALSTDARFANMLGQPG
STPLDLFKFYVEDLKARFHDEKKIIKDILKDRSFSVEVNTTFEDFAHVISFDKRAATLDA
GNIKLTFNSLLEKAEAREREREKEEARKLRRREAAFKSMLKQAAPPLEPGVTWDEVRERF
VCDTAFEQITLESERIRLFREFIQVLETECQHSHAKAKKHNKKGKKHHRKRPPAGGAVGE
RGLGPSPPLRLQGSDSEPDEQHHRAPKRKRRNHSDSGSDASSSPASDHSSRKSKKQKKKS
KKKRHKSDSPESGAEREREKGRREPEPELALEPEPERVEPRRRSPKRSLRRMKSGWDTSE
SEPSEGELEKRRRTLLQQLDDHQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctcccgaatccggcagcggcccctcagggcagccggccccgttccccagcgcc
ccccccatgatgccaccgcccttcatgcctcccccggggatgccgccccctttccctccg
atggggctacccccattggggccacggccgcctgccgtaccccccatgccccctggcctg
atgccgccgatgatgccacccatgacagcgcccccgcctatgggacagatgccagccatg
gtgccgcccttgatgccggggatgctgatgccgggggtgcctgccggccccgtccctgtg
cccagagcggcggctcccgggacagagcccctcggggcccctccagcccagccggctccc
gcgctcctgaaccccttggtggctgcggtgcagcagagcgtgacgggcagcagctctccg
gcccgcgacctgtcccgcaagaagcctccctggactgagcataaggcccccgacgggcgc
acctactactacaactgcgactccaagcagtccacctgggagaagccggacgatctcaag
tccaaagcagagctgctgctgtcccagtgcccctggcgcgagtacaagtcggacacaggc
aagtcctattactacaacgcccagagcaaggagtcgcgctggaccaagccccgggacctg
gatgagctggaggccttgatcaaagaggaggaggaggccgggaagcagcaggagacgcca
tctgccgcctccagcccgtccctgtcctcagctgccaccacggacacggaggccacagct
gcagatgagcaggagccgctggcactaggggccgtggccgaaaccccagaggaggtcatg
ccgctgcaggaggacgtggctggcagtgccgaccccagccggcgggaggaggatgagcgt
ggggacgcgatgccgagtgccggcagctggagcaccaaggaggaggccaagcaggcgttc
aaggacctgctgaaggacaagggcgtcgcttccaatgcatcgtgggagcaggccatgaag
atgatcatcaatgacctgcggtacagcgccctgcccaagctgagcgagaagaagcaggcc
ttcaacgcctacaaggcccaacgcgagaaggaggagaaggaggaggcgcggctccgggcc
aaggaggcccgggaggaactgcagcggttcctggagcagcacgagcgcatgagctccacc
acccgctacaggaaagctgagcagatgtttggggagctggaggtctgggctgtggtccca
gagcgtgaccgcaaggagatctacgatgacgtcctcttctttctggccaagaaggagaag
gaacatgccaagcagctgcgcaagcgcaacatccaggcactgaagaacatcctggatagc
atgagcaacgtcagcttccagaccacctggtccgaggcccagcagtacctgatggacaat
cccacctttgcagaggacgaggacttgcagaccctgcagtcactcagcacccgccccggg
acaccacgccagcgcggcccctgccccctgaccccggggcctcttgcagacatggacaag
gaggacgcactgatctgctttgaggagcacatccgcacgctggagcgggaggaggaggag
gagaaggagaagacacggctgcgtgaaaggcgtcagcagcgcaagaatcgcgaggccttc
caggccttcctggacgagctgcacgacaaggggcagctgcactccatgtccacctggatg
gagctgtacccggcactcagcaccgacgcccgcttcgccaacatgctggggcagcccggc
tccacgccgctggacctcttcaagttctacgtggaggatctcaaggcacgtttccacgat
gagaagaagatcatcaaggacatcctgaaagaccgcagcttcagcgtggaggtgaacacg
accttcgaggactttgcacacgtcatcagcttcgacaagcgggcggccacgctggacgcc
ggcaacatcaagctcaccttcaacagcctgctggagaaggcagaggcgcgggagcgggag
cgggagaaggaggaggcgcggaagctgcggcggcgtgaggcggccttcaagagcatgcta
aagcaggcggccccgccactggagcctggcgtcacgtgggacgaggtgcgcgagcgcttc
gtatgcgacacggccttcgagcagatcacgctggagtcagagcggatacgcctcttccgc
gagttcatccaggtgctggagactgagtgccagcactcccacgccaaggccaagaagcac
aacaagaagggcaagaagcaccaccgcaagcgcccaccagctggcggggcagtgggggag
cgggggctgggaccatcgccccccctgcggctgcagggctctgactcggagccagacgag
cagcatcaccgcgcacccaagcgcaagaggaggaaccactcggactcgggctctgacgcc
tcctcctcgcccgcctcagatcacagctcccggaagtccaagaaacagaaaaagaaaagc
aagaagaagagacacaaatcggacagccctgagagtggggccgagcgggagcgggagaag
ggccggcgggagcctgagcccgaactggccctggagcccgagccggagcgcgtggagccg
cggcgccgctcgcccaaacgcagcctgcggcggatgaagagcggctgggacacgtcggag
agtgagcccagcgaaggcgagctggagaagcggcgccggacgctgctgcagcagctggat
gaccaccagtag
DBGET
integrated database retrieval system
