KEGG   Alligator mississippiensis (American alligator): 102558189
Entry
102558189         CDS       T03087                                 
Symbol
LSM4
Name
(RefSeq) LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102558189 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102558189 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102558189 (LSM4)
   03041 Spliceosome [BR:amj03041]
    102558189 (LSM4)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102558189 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102558189 (LSM4)
Spliceosome [BR:amj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102558189 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102558189
NCBI-ProteinID: XP_006271085
LinkDB
Position
Un
AA seq 216 aa
MRAWCTRERGCTPAPQWLTRGRGARCTVGGGWCPAAVCGTVVQAARRFAAAGLFGGPGGA
KAGGRRKRKWERGGRGGSMLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE
VICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGLQQQKQQKGR
GAGGTGRGVFGGRGRGIPGSGRGQQEKKPGRQSAKQ
NT seq 651 nt   +upstreamnt  +downstreamnt
atgcgtgcgtggtgcacacgggagagggggtgcacacctgcgccgcagtggctaacgcgt
gggaggggcgcgcggtgcactgtgggaggcgggtggtgcccggcggcggtttgcggcact
gtcgtgcaggcggcgcggcgctttgcggcagccgggctctttggcggcccgggcggcgcc
aaggccggcgggaggcggaagcggaagtgggagcggggcggccgcggcggcagcatgctg
cccctgtcgctgctgaagacggcgcagaaccaccccatgctggtggagctgaagaacggc
gagacctacaacgggcacttggtgagctgcgacaactggatgaacatcaacctccgcgaa
gtcatctgcacgtcccgggatggggacaagttctggaggatgccagagtgctacattcgc
ggcagcaccatcaagtatctgcgcatcccggacgagatcatcgacatggtgaaggaggag
gtggtgtccaagggcaggggccgcggtgggttgcagcagcagaagcagcagaagggccgt
ggagccggaggcaccgggcgaggtgtgttcggaggccgcggccgagggattccaggcagc
ggccgagggcagcaggaaaagaagccaggcaggcagtctgcaaagcagtga

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