Alligator mississippiensis (American alligator): 102558315
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Entry
102558315 CDS
T03087
Symbol
COL4A5
Name
(RefSeq) collagen type IV alpha 5 chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04382
Cornified envelope formation
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558315 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558315 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558315 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102558315 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102558315 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102558315 (COL4A5)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102558315 (COL4A5)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102558315 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102558315
NCBI-ProteinID:
XP_019343342
LinkDB
All DBs
Position
Un
AA seq
1697 aa
AA seq
DB search
MRLAARSPGASLAAGCLVLLGLCGRAADAAACHGCTSSSKCDCSGVKGEKGERGFPGLEG
QPGLPGFPGPEGPPGPRGGQGDDGLPGPVGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPG
PTGIPGCNGTKGEHGFPGSPGFPGLQGPPGPPGFPGMKGEPGEIIVSSLPGQKGDSGFPG
LPGIPGPPGPIGTSGPIGPPGPPGLTGPPGPPGLQGPKGNMGLNFQGPKGEKGERGLQGP
PGPPGQIGEQKRPNDVEFQKGDQGAPGERGPSGPPGPQGPPGPPGGMKGEKGEPGDPGKR
GKPGKDGEPGQPGRNGSPGEPGINGEPGRDGEKGEKGESGPPGPPGRIISRPGNGATVGP
KGSKGLSGLPGSKGERGYPGLPGPPGLPGPPGITTLGPPGPPGLPGERGQKGDQGLPGIS
IPGQPGLDGQPGPPGPPGPPGRPGSAVPSRNGLCEPGPPGPPGPPGDQGFMGEQGQKGDK
GDTCFNCIGNGISGPPGERGPVGPPGSLGPPGFPGPKGEKGLPGLAGLEGQRGFPGPPGA
PGRPGPKGDPGDILTFPGMKGEKGDPGFPGPPGLPGIDGSPGRDGLPGLPGPKGESGSVV
FKGEMGPLGDPGVPGLPGDRGPIGPPGFGPQGPPGEKGIQGVSGRPGPPGVPGPKGEPGQ
TLTEQGVPGAPGPPGRNGEPGLPGDPGQPGQSGLPGIPGAKGEPGLPGIGLPGPPGPKGF
PGVPGPPGAPGSPGRPGLDGPPGQPGFPGQKGERGFGVPGPPGPPGPVGPKGLLGPKGDP
GFPGSPGLPGRAGFDGAPGPKGDPGPSGSPGLSGPPGFPGIGGQGPPGPPGPPGPSGPPG
DPGPQGVPGEKGDPGPPGFDIPGPPGDRGIPGFPGPPGLLGPPGPPGPPGRDGIPGFAGA
KGEMGVMGAPGPQGPPGIPGRNGLPGPKGNDGLPGQPGSPGFDGLKGVKGETGLPGAPGK
VDPSQLGSKGEKGEPGVPGISGIPGQKGYQGLPGDPGPPGLNGQPGTPGLPGLKGEPGLP
GQPGLTGPPGLKGAMGEMGLPGPQGIKGSQGTAGRPGPSGPPGIPGLKGEKGDPGLSDIG
IPGLPGPKGDPGLPGYPGSPGSKGVAGNPGLPGLPGSAGTKGEPGLPGFSGTPGIPGPKG
IDGPPGNPGLPGSPGSPGDVGRPGSPGSPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGP
PGLPGLSGQKGEMGLPGPPGVPGRPGLKGEPGFQGFPGPQGPAGLPGPPGPPLEGPKGSP
GPQGIPGTSGPSGPPGPPGPEGPRGPPGSGGLQGEKGNPGPPGQPGLPGLKGDQGPHGRQ
GDPGRPGLNGMKGDPGVPGVPGFPGMKGPVGPPGPVGLTGSQGPAGPPGPPGLPGPTGQT
LVYKGDPGPPGAPGQPGAKGPPGLPGPQGLPGPIGLPGDAGRDGLPGFDGPAGRKGDKGL
PGHPGSRGLQGPPGPDGLQGPPGPPGAASVAHGFLITRHSQTTDAPLCPQGTARLYDGFS
LLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEQMPMS
MEPLTGKSIQPFISRCVVCEAPAMVIAVHSQTIQIPSCPLGWDSLWIGYSFMMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEMSEMFSKPQSETLKA
GDLRTRVSRCQVCMKRT
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggccgcgcggagccccggggccagcctggcagccggatgcctggtgctgctg
gggctgtgcgggcgggctgcggacgccgcggcttgccatggatgtacatcatcatccaaa
tgtgactgtagtggtgtcaaaggtgaaaagggtgagaggggattcccaggtttagaaggt
cagccaggtttacctgggtttccaggaccagagggaccccctggccctagaggtggacag
ggtgatgatggacttccagggcctgttggacccaaaggaatcagaggacctccaggactt
ccaggatttccaggaacaccaggacttcctggattaccagggcaagatgggccaccagga
cccacaggtatcccaggatgcaatggaacaaagggagaacatggattcccaggaagtcca
ggttttccaggtttacaaggccctcctggaccccctggctttccaggtatgaagggtgaa
cctggtgaaataattgtgtcctcgcttccaggacagaaaggtgactcaggattcccaggt
cttccagggataccaggtccacctggtcccattggtacatcaggtccgattggtcctcct
gggccaccaggtttgacaggccctcctggtccaccagggcttcaaggacctaagggtaat
atgggattgaattttcaaggacccaagggtgaaaagggtgaacgaggccttcagggacct
cccggacctccaggacaaataggagaacagaagagaccaaatgatgttgagttccagaaa
ggagatcagggtgcaccaggtgaacgtggtccatcaggacctcctgggccacaaggtcct
cctggtccccccggtggcatgaaaggcgaaaaaggtgagccaggagatccaggcaaaaga
gggaagcctggcaaagatggagaacctggccagcctggtagaaacggttcacctggtgag
ccaggtataaatggggagccaggaagagatggggaaaagggtgagaaaggtgaaagtggt
cctcctggtcctcctggaaggataatttcaagaccaggaaatggtgcaacagtgggacca
aaaggtagcaaaggattgtcaggtcttccaggatccaaaggggaacgtggatatcctggc
ttgccaggtcctccaggattgccaggtcctccaggaatcacaactcttggccctcctggc
ccacctggattgccaggtgagagaggacagaagggggatcagggtttacctggaatttcc
atacctggacagcctggactcgatggacaacctggaccacctggaccgccaggtccccct
ggacgtcctggatcagctgttccttctcgaaatggattatgtgagccagggcccccaggt
cctccaggtcctccaggagaccaaggctttatgggggagcaaggccagaaaggtgataag
ggagatacatgcttcaattgtataggaaatggcatatcagggcctcctggggagagggga
ccggttggacctccaggtagcctaggacctcctggtttccctggaccaaaaggtgaaaaa
ggacttcctggcttagctgggctggaagggcaacgaggatttccaggacctccaggtgcc
cctgggcgacctggtcccaaaggggacccaggggacatcctcacttttccaggaatgaag
ggtgaaaaaggagaccctggtttcccaggacctccaggtcttcctggtatagatgggtct
cctggacgagatggactgccaggtcttcctggacccaaaggggagtctggtagtgttgtc
ttcaaaggggaaatggggcctctaggtgatccaggagtaccaggtcttcctggagacaga
ggacctatcggacctcctggttttggccctcaaggtccaccaggtgaaaaaggcattcag
ggtgtatccggtcgtccaggccccccaggagttcctggtccaaaaggtgagcctggtcag
actcttacagaacaaggagttccaggtgcccctggtcctcccggcagaaatggtgaacca
ggtcttccaggtgaccctggtcagccaggtcagtctggcttaccaggcatcccaggtgca
aagggagagccaggtctgcctggcattggacttccaggcccaccagggccaaaaggtttc
cctggagtgcctggcccacctggagcaccaggaagccctggacgacctggtctagatggg
ccacccggacagcctggtttcccaggacagaagggggaacgtggatttggtgtcccagga
cccccaggacctccagggccagtgggtccaaaaggactactgggacccaaaggggatcct
ggctttccaggaagccctggtcttccaggacgggcaggttttgatggagctccagggcca
aaaggtgaccctggaccaagtggatcaccagggctctcaggtccaccagggttccccggc
attggtggtcaaggtccacccggaccacctggacctccaggaccttcagggccaccaggt
gacccaggaccccagggtgttccaggggagaagggggatcctggtcccccagggttcgac
attcctggtcctccaggtgacagaggtattccaggatttcctggacctcctggtcttctg
ggtccaccaggtccaccaggtccaccgggacgggatggaataccaggatttgcaggtgcc
aaaggtgagatgggtgtgatgggagctccaggtccacaaggccctcctggcattcctgga
cgaaatggccttcctggccccaaaggcaatgatggtttaccaggtcagccgggatcacct
ggatttgatggactaaaaggtgtcaaaggtgaaacaggcctcccaggtgcccctgggaaa
gttgatccaagtcagctgggatcaaaaggagagaagggtgagccaggtgtcccaggtatt
tctggaataccaggtcagaaaggttatcaagggctccctggtgacccagggccacctggc
cttaatgggcagccaggtacaccaggattaccaggtctgaaaggagagcctgggctgcca
ggacaaccaggactaacaggccctccgggactaaaaggtgccatgggagagatggggctt
ccagggccccaaggtattaaaggctcccaaggaacagcaggacgccctggcccatctggt
cctcctggaattcctgggttaaagggagagaaaggtgacccagggctttcagacattggc
atcccaggcctccctggtcccaagggggatcctggtttgcctggataccctggtagccct
ggcagcaaaggagtagctggaaatcctggtttgcctggattgccaggcagtgctggtaca
aaaggagaaccaggccttcctggattttcaggaacaccaggaattccaggaccaaaagga
atcgatggccctccaggtaatcctggtctgcctgggtcgcctgggtcaccaggtgatgtt
ggccgccctggctctccaggttctccaggagagaaaggacaaccaggtcgagatggtatt
cctggaccagctggacagaagggtgaaccgggtctcccaggttttgggcgcccaggacct
ccaggactcccaggattatcagggcagaagggtgaaatgggattgcctggtcctccagga
gtccctggacgtccaggtctaaagggtgaaccaggtttccagggattccctggtcctcaa
ggtccagcaggtctaccaggcccccctgggccacctctggaaggtcctaaaggtagtcct
ggcccccaaggcataccaggaacatcaggtccctcaggtcctccaggtccaccaggtccg
gaaggtccccgaggacccccgggaagtggaggacttcaaggggaaaaaggaaacccaggt
ccgcctggccagcctggcctgcctggtctgaaaggagatcaaggaccccatggtcgtcag
ggtgatcctggtcgtcctggtctgaatggaatgaaaggtgaccctggggttccaggcgtt
ccaggttttccaggtatgaaggggcccgttggacctccaggaccagtcggccttacaggt
agtcagggcccagcaggcccaccaggtccaccaggcttacctggccccactggacaaacc
cttgtatataaaggtgatccaggtcctcccggtgctccaggccaacctggagccaaaggg
ccacctggattgccaggcccacaaggacttccaggcccaataggacttcctggggatgct
gggcgagatggactccccgggtttgatggtccagcagggcgcaaaggtgacaaaggactt
cctggccatccaggttcacgaggtttacaggggccccctggtccggacggcttgcaaggc
ccaccaggtcctcctggagcagcctctgttgctcacggattcctgataactcgacacagc
cagacgacagatgcaccattgtgcccacaaggaacagcaaggctgtacgacggattttct
cttctctatgtccagggaaatgagagagcccatggccaggacttgggcactgccggtagc
tgtctgcgcaggtttagcaccatgcccttcatgttctgtaacatcaacaatgtttgcaat
tttgcatcaagaaatgattattcctactggctatccactccagaacaaatgcccatgagc
atggagccgctgactgggaagagtatccagccattcattagccgatgcgtagtatgtgaa
gctccagccatggtcatagcagtccatagtcagaccattcaaataccatcgtgtccacta
ggatgggattctctttggattggttattctttcatgatgcacacaagtgcaggtgcagag
ggctctggacaggccttagcatctccaggatcctgtttggaagaatttcgctcagcccct
tttattgagtgtcacgggcgtggtacttgtaattactatgccaactcgtacagtttctgg
ctggcaactgtagagatgtcagaaatgtttagtaaacctcagtcagagacactgaaagct
ggagacctgaggacacgtgttagccgttgccaagtttgtatgaagaggacgtaa
DBGET
integrated database retrieval system
