Alligator mississippiensis (American alligator): 102558333
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Entry
102558333 CDS
T03087
Symbol
VPS8
Name
(RefSeq) VPS8, CORVET complex subunit
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102558333 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102558333 (VPS8)
Membrane trafficking [BR:
amj04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102558333 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR5
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
zf-RING_UBOX
DUF5770
Motif
Other DBs
NCBI-GeneID:
102558333
NCBI-ProteinID:
XP_006270514
UniProt:
A0A151NH37
LinkDB
All DBs
Position
Un
AA seq
1414 aa
AA seq
DB search
MEKMADELKTETENLNPEQSMSSTGLEDDLGKLLGQETLLPKLGSIDLERELDAKSELID
DKEFNIPQVDTPPTLESILNETDDEEETFVLEDPSLLNIDNIDTHSYDTSSVASSDSGDR
AHMKRKKRLPDSFSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHG
LALIFDQNQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLR
SITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEV
CCIEPLHAKTELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLA
WHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWMNSRTV
VLLDSVEKLHVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQ
SISSCGSQIFYLGTKSVHVMTLRSWRERVDHLLKQECLTEALALAWSFYEGKAKAVVGLS
GDVGKRKAVIADRMVEILLHYTDRTLKKCPDQGKIQVMEQHFQDMVPVIVEYCLLLQRTD
LLFSQVYDKMSENSVAKGVFLECLEPYILSGKLIGMTAQVMKDLLLHFQDRNLLENMEAC
IVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMNDFLSPMERLFKVIAPPLSAGKSLT
DEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASTDEEVYP
YVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLF
TFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENR
LIQMAEKAEFYQICEFMYEREHHYDRIIDCYLRDPVRKEDVFNYIHNILSIPGYSAEEKH
SVWQKALEHMEELLLLSPSKAADLITTHFNDQLEGIINNLQDQFLLFQFLRSLLDPREGI
NQDLIHVSPCITEQFIELLCHYSPDQVLEMLQVLEFYRLEETIQTTQKHQLHEASSYLLE
KKGDVHGAFLVMLEQLQSKLLVLTQEDENSTQSDSVKDIEATLLKTIALCQRNSHNLNQQ
QREALWFPLLEAMMSPQKLSGSSASCRYSEHLKNLTMQVLNNMAAFIALPSILQRILQDP
VYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDY
CCICLQQYKRRQETSDEIIVFSCGHLYHSLCLLSKECGLETQGLMRWTCYKCNSSNKAGK
LCESFSELKKGSSTSLAQASSESVLDPQQIQAFDQLCRLYRGTSRLALLTELSRSRGGER
PGPLSVSQGDSALSSVFQNENFQLHLAPPPFTEE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatggcagatgaattgaagacagagactgaaaacctcaatccagaacagagc
atgtcttccacaggactggaagatgaccttggcaagctcttgggtcaggagacacttctc
ccaaagttgggcagtattgatctggaaagagaactagatgccaaaagtgagctgattgat
gataaagagttcaatattcctcaggtggataccccaccgacgctggaaagcatattgaat
gagactgatgatgaagaagagacttttgtgctggaggatccctcgcttttgaacatcgat
aatatcgacacacactcttacgacacgtcttcagtggcgagctctgacagtggagaccgg
gcacacatgaaaagaaagaaaaggctccctgattctttttctctccatggatctgtcata
cgactttcacttctgaaaggaatttctgcccaaatagtttctgctgcggacaaagtggat
gctggcttgcctactgccatagcagcatcaaatctgattgctgtggggacttctcatggg
ttggcattaattttcgatcagaaccaggctcttcggctttgtctcggcagcacagctgtt
ggtgcccagtacggggctatctcagctctcagtatcaataatgactgctcgagacttctg
tgcggctttgcaaaaggacagattactatgtgggatctggctagtgggaaacttctgaga
tcaataacagatgctcatcccccaggaacagccattttgcacatcaagttcacagacgac
ccgacccttgcgatttgcaacgacagcggaggctctgtcttcgaactgtcatttaagaga
gtgatgggagtgagaacctgcgagtctcggtgtctgttcagcggatccaagggggaagtt
tgctgtattgagcctttgcacgcaaagacagaactgagagatcatcctattacccagtac
tccctgctagcaatggcctccttgactaagatccttgtcattgggttgaagccatctctg
aaagtgtggatgacttttccatatggtcgtatggatccctccagcgttcctttgctggct
tggcacttcgttgctgtacagaactcggtaaaccccatgcttgccttctgtcgtggagat
gtggttcattttcttttggtaaagagagatgattcgggtgcaatacatgttactaagcag
aagcagctgcatctgcattacgacctcatcaattttacttggatgaattcgcgcacggtg
gtgcttctggatagcgtggagaagctccatgtgatagatcgccagacgcaagaggagttg
gagaccatagagatttcagaggttcagctagtctacaacagcagtcacttcaaatcactg
gccacagggggcaatgtcagccaggctctggcacttgttggggaaaaagcctgctatcag
tcgatcagcagctgtggcagtcagattttctaccttggtacaaagtccgttcatgtgatg
acactaaggagctggagggagagagtggatcaccttctgaaacaagaatgtcttactgag
gccctggctctagcttggtctttttatgaaggtaaagcaaaggctgttgtagggttgtcc
ggagatgtcggcaagcgaaaggcagtcattgcagacagaatggttgaaatccttctccat
tacactgatcgaactctgaagaagtgtcccgaccagggaaaaatccaagtgatggaacaa
cattttcaggacatggtgcccgtcatagtcgagtactgcctcttacttcagcgcacggat
cttttattcagccaggtatatgacaagatgagtgagaattctgtggccaaaggggttttc
ctggagtgcctggagccatacattttaagtggcaagctgatcggaatgacagctcaagtg
atgaaagacttgctgcttcacttccaagataggaacctgttggagaacatggaggcctgc
attgtgcacatggatatcaccagcctcgacatacagcaggtagttcttctttgctgggaa
aatcatctctatgatgccatgatctatgtctataacagtggaatgaatgacttccttagt
ccaatggagaggttgttcaaagtcatcgctcctccactgagtgctgggaagtctctcaca
gatgagcaggtcgtgatgggcaacaagcttctagtttatataagctgctgtttggcaggt
cgtgcttacccgttgggtgatattcctgaagatctggttcccttggttaaaaaccaggtc
tttgagtttcttatccgcctccactcagccgaggcatccactgatgaagaagtttatccc
tatgttcgtacactgctgcactttgacacccgggagttccttaacgtccttgcactgact
tttgaagatttcaagaatgacaagcaagcggtggagtatcaacagagaatcgtggatatc
ctgctaaaagtcatggtggaaaattctgacttcaccccatcgcaggttgggtgtctcttt
accttccttgctcggcagctcgccaagcccaacaacacgttgtttgtgaacaggacactt
tttgatcaggtccttgaatttctgtgcagtcctgatgatgattcccgacactccgagaga
cagcaggtcctgttagaactgctgcaggctgggggaatagtacagtttgaagagaaccgt
ctcatccaaatggcagaaaaagctgaattctaccaaatttgtgagtttatgtatgaacgg
gagcatcactatgaccgaatcattgattgttacctgcgtgatccagtgagaaaggaagac
gttttcaactacatccacaatattttgtccattcctggatacagtgcagaggagaagcat
tcagtgtggcagaaagctctggaacatatggaggagctgcttttgctgagccctagcaaa
gctgcagacctgatcaccacgcacttcaatgatcagcttgaagggatcattaacaacctt
caggaccagttcttgcttttccagtttttgaggagtcttcttgacccgagggaaggaatc
aatcaggatctgatccacgtatctccctgcatcactgagcagttcattgagttgctgtgt
cactacagtcctgaccaggttttagagatgctacaagtcctggagttctacagactggag
gaaaccattcagaccactcagaaacaccaactccatgaagcttcctcatacctcttggaa
aagaaaggagatgtccatggtgccttcttggtaatgcttgagcaactgcaaagcaagctg
ctggtgcttacacaggaagatgaaaattcaacacaatccgattcagtaaaggatattgaa
gctaccttactgaaaacaattgcactttgccagaggaattcacataatttaaaccagcag
cagcgagaggctctctggtttcccctcctggaggctatgatgtcgccacagaaactgtca
ggttcttcagcctcatgccgatactctgaacatctgaagaatttgaccatgcaggtgctc
aacaacatggctgcttttattgcccttccatcaatcctgcagagaattctacaggatcct
gtttatggtaaagggaaacttggagaaattcagggacttgtactggggatgctggatacg
tttaactatgagcagacccttctagagactaccactaacctcctaaaccatgatctccac
tggtccctttgcaacctgagagcctctgtcaccagagggctgaccccgaaacaggattat
tgttgtatctgtctgcagcaatacaagagaaggcaagagacctctgatgaaatcattgtc
ttcagctgtggccatctctaccactccctctgcctgctgagtaaagaatgtggcctggaa
acccaagggctgatgagatggacttgctacaaatgcaactccagtaacaaagcggggaag
ctatgtgagagcttctcagagttgaaaaaaggaagcagcacatctctggctcaggcaagt
tcagagtctgtgttggatccccagcaaatccaggcctttgatcaactctgccgactttac
cggggaacctccaggttggctctcctgacagagctgtcccggagtcgtggtggagaaagg
cccgggcctctcagcgtctcacaaggcgactctgccctgagcagcgtttttcagaatgag
aatttccagctgcaccttgctccccctccattcacagaggagtag
DBGET
integrated database retrieval system
