Alligator mississippiensis (American alligator): 102558375
Help
Entry
102558375 CDS
T03087
Symbol
SMG7
Name
(RefSeq) SMG7, nonsense mediated mRNA decay factor
KO
K14409
protein SMG7
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102558375 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102558375 (SMG7)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102558375 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
102558375 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Ferlin_C
Motif
Other DBs
NCBI-GeneID:
102558375
NCBI-ProteinID:
XP_014451510
UniProt:
A0A151MI95
LinkDB
All DBs
Position
Un
AA seq
1140 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSEDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERQYIWPWLISLLNSFQPREEDLSNNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEI
GKLLFLTEIPELLLEDPSEAKESLALQETSIAEPLSIDGSPGLKSVLSTGRSLNSNCDTG
EKPMVTFKENIKPREINREQGRIYPPKDVGRERRDFSKGIIANKNDGKKDNNKRKNETKK
CSLEKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASNSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTTHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMNQGPQQTPPPSQQPLSSLPAQATAQSASQLQVQALAQQQQSPTKAVQA
LGKSPPHHSGFQQYPQADSSKQLWSPPHVQGSLGKMMSVKQPYYIQAQDPLKLFEQSLQP
QVMQQQPLEKKMKPFSMEPYNQNPSEVKMPEFYWDSSYGLPDNRVMAQQNNMDRRGKRQQ
GVFRPEQDAVSRMAFEKSLLEKPSELMSQSSSFLSLTGFSLNQERYPNNSMFNEVYGKNM
NTSTKAEVTPSVTHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPT
HNHNSVPFSNFGPIGTPDNRDRRIADRWKTDKPAMGGFGLDYLPATSSSSESSWHQTSTP
SGTWAAQGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgcgcgcagtacctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggtccagctgaagtctggacatcccgacaagctttgcaggacttatac
caaaaaatgctagtaactgatctggaatatgcgttagataagaaagtagaacaagacctc
tggaatcatgccttcaagaatcagatcacaacactacagggtcaggcaaaaaaccgagca
aatccaaaccggagtgaagttcaggcaaacctttctttgttcctagaggcagctagtggg
ttctacacacagttattacaggagctgtgcacagtatttaatgtagacttaccctgtcgt
gtgaagtcctcccagcttggaattatcagcaataaacagacgcacactagtgccattgtg
aagccacagtctagttcctgctcttacatctgccagcactgccttgtccaccttggagac
attgctcgctacagaaatcaaaccagccaggcagaatcctactataggcatgcagctcag
cttgtcccctccaatggtcagccttacaatcagttggctattttagcttcctccaaaggg
gaccacttgaccacaattttctactactgcagaagcattgctgtgaagttcccttttcca
gctgcctccactaatctacagaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagtgtgtctgacttcatcaaggcatttattaaattccatggccatgtg
tacctgagtaaaagcttggagaagctgagccctcttcgagaaaagctggaggaacaattc
aagcgattgttattccaaaaagccttcaactctcagcagttagttcatattactgtcatc
aacttgttccagctgcatcacctgcgagattttagcaatgaaactgaacagcacagttac
agcgaggatgaacagctctgttggacacagctgctggctctcttcatgtcttttcttgga
gtcctgtgcaagtgtccattacagaatgactaccaggaggactctggagctgcatatcct
cttccagctgtaaaagtttcgatggactggttgaaacttaggcccagtgtcttccaggag
gcagtagtggatgagagacagtacatttggccctggctgatttctcttctaaacagtttc
cagccccgtgaagaagatctgtccaataacaatgctactccacttccggaggagtttgag
ttgcagggattcttggctctgaggccttcattcaggaacttggatttctccaaaggtcat
caggcaattacaggagacaaagaggggcagcaacggcggatacggcaacagcgcttgatc
ttcacagggaaatggattgccgacaaccagccaaggctgattcagtgtgaaaatgagata
ggaaaactgctgtttttgacagaaatccctgagttattactagaagatcctagtgaagcc
aaagagagtcttgccctgcaagaaacgtccattgcagaaccactgtctatagatgggagc
ccaggactcaaatcagttctgtccactggcagaagtctaaacagcaactgtgatacagga
gaaaaaccaatggtcacatttaaggagaacattaaaccacgagaaataaacagagaacaa
gggcgtatctatccaccgaaagatgtgggtagggaaagaagagactttagcaaaggaata
atagccaataagaatgatggaaaaaaggacaacaacaagaggaaaaatgagaccaagaaa
tgcagcttggagaagatgcaagaggcaggaaagcagaatgtggcagtgcaggtgaaatct
cagactgagatgaggaagacacctgtgtctgaagccaggaaaacaccagtaactcagact
ccaagtcaggcaagcaattcccagtttatccccattcaccacccgggagcctttcctcca
cttcctagcaggccaggattcccacctccaacgtatgtcgttccccctcctgtggctttc
tccatgagcacaggttacactttcccaggtggcgtttctgtcccaggaacctttcttcag
cctacaactcactcacctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcca
tacagccagcagcggccctctggaccagggccaatgaaccagggacctcaacaaacacca
ccgccttcccagcaacccctctcatccttaccagctcaggcaacagcacagtctgcaagc
cagcttcaggttcaggctctggcccagcagcagcagtcccctacaaaagctgttcaggca
ctagggaagagtccacctcaccactctggattccagcagtatccacaggcagactcatca
aagcagctctggagtcctcctcatgtccaaggttcattgggaaagatgatgtctgtaaag
cagccctattatattcaggcccaggaccccctaaaactgtttgaacagtcattacagcct
caagtgatgcagcagcagcctctagagaaaaaaatgaagcctttctccatggagccatat
aaccagaatccctcagaagtcaagatgccagaattttactgggactcctcttatggcctg
cctgataatagagttatggcacaacagaataacatggaccgcagggggaaacgacagcaa
ggtgtcttccgtccagagcaggacgctgtgtccaggatggcttttgagaagtccctattg
gaaaaaccatcggagttgatgtctcagtcatcttccttcctgtccctcaccggcttctct
cttaatcaggaaagatacccaaataacagtatgttcaatgaggtatatgggaaaaatatg
aataccagcacaaaagcagaggtcactccctcagtcacccaccaggagacctcactatac
tctctctttgaagggacaccttggtctccgtcccttccagccagctcagaccattcaacg
ccagccagccagtcccctcactcctccaaccctagcagcttgccaagctcccctccaact
cataatcacaactctgttcctttctccaactttggacctattgggactccagacaacagg
gacagaaggattgcagaccgttggaaaacggataagccagcaatgggaggatttggcctg
gactatctcccggcaacatcttcctcttcagaaagcagctggcatcagaccagcactcct
agtggcacctgggctgcccagggcccctccatggaggattcctccgctgtgctcatggag
agcctcaagtctatctggtccagctccatgatgcatcctggaccttcagccctggagcag
ctgctaatgcagcagaagcagaagcagcaacgtggacaaggcaccatgaatccaccgcac
tga
DBGET
integrated database retrieval system
