Alligator mississippiensis (American alligator): 102558593
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Entry
102558593 CDS
T03087
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03008
Ribosome biogenesis in eukaryotes
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102558593 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
102558593 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102558593 (XRN2)
03019 Messenger RNA biogenesis [BR:
amj03019
]
102558593 (XRN2)
03009 Ribosome biogenesis [BR:
amj03009
]
102558593 (XRN2)
03016 Transfer RNA biogenesis [BR:
amj03016
]
102558593 (XRN2)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102558593 (XRN2)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
102558593 (XRN2)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
Pre-60S particles
RNases
102558593 (XRN2)
Transfer RNA biogenesis [BR:
amj03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102558593 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
Motif
Other DBs
NCBI-GeneID:
102558593
NCBI-ProteinID:
XP_006277412
UniProt:
A0A151ND65
LinkDB
All DBs
Position
Un
AA seq
955 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEERPKECNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIIRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVEATEEKQRVRQEILAKGGILPAEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQLGHEVKDCQGLPREKQGEHDQFADCPLTSEQE
FIFIRLNVLREYLEKELTMASLPFTFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDNIFKKRKDDEENFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGSGNRSNPQTISNPRQAAFEMRMQNSTPSASPNTSFT
SDGTPSPAGGIKRKAEDSDSEPEPEDNIRLWEAGWKQRYYKNKFDVDASDEKFRRKVVRS
YVEGLCWVLRYYYQGCASWKWFYPFHYAPFASDFEGIADLPSDFEKGTKPFRPLEQLMGV
FPAASGNFLPPTWQKLMTDPESSIIDFYPEDFAIDLNGKKFAWQGVALLPFVDERRLRAA
LEEVYPDLTSEENRRNSLGGDLLFVGKNHSLCDFIAELYKSSTTEPVDMPPELCHGIQGK
LSLNENPVLPDQVVQSPVPTLRDLAQNSAVSINFKDPQFNEDFVFKAVVLPGAKKPLPVL
KPGDWEKTNNNGRPWRPQLGFNRDRQPVHLDQSAFRTLGHAMSRERGQPGSGMYSNAAPL
GAYQGNPYRPLFSGQPQIPKLLSNLRPPESWRGPTPLFQQPPQRYDRSSGAAPLLAWNRM
VQSQNAAFQQNQYQGVGGPMNYPQRPEDRMDRGRQGYGPGRPYPLPPPAGRYNWN
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtggaggaaaggcctaaagaatgcaatggagtcaaaattccagttgatactagtaaa
cctaatcccaatgaggtggagtttgataacctgtatttggatatgaatggcattattcac
ccttgtacacatcctgaagataaaccagcacccaaaaatgaagatgaaatgatggttgca
atttttgagtacatcgacagactttttaacatcataagaccaagacgacttctctatatg
gcaatagatggggtggctccccgtgcaaaaatgaatcaacagagatccagaagattcaga
gcatcaaaggagggagtggaagctacagaagagaagcaaagagtaagacaagagatactg
gcaaaaggtggcattcttcctgcagaggaagtgaaagagagatttgatagcaattgtatt
accccaggaactgagtttatggacaatctagctaaatgccttcgctattacattgctgat
cgtttaaacaatgacccaggatggaaaaatttgacagttattttatcagatgctagtgct
cctggtgaaggtgaacacaaaataatggattacattagaaggcaaagagctcaaccaaac
catgatccaaacactcatcattgtttatgtggggctgatgctgatttgattatgcttggg
ctagccacgcatgagccaaacttcactataatcagagaagagtttaaaccaaataaaccc
agaccctgtgctctttgtaaccagttgggacatgaagttaaagattgccaaggtttgcca
agagaaaaacaaggcgagcatgaccagtttgctgattgtcctcttacctctgaacaagag
ttcatctttatccgattaaatgttctccgagagtatttggaaaaagaactcaccatggcc
agtttgccttttacttttgattttgagagaagcattgatgactgggtcttcatgtgtttc
ttcgttggaaatgactttcttcctcatctgccatcactggagatcagggagggagcaatc
gatcgcctggttaacatatacaaaaatgtggtgcacaaaactggggggtacctcacagag
agtggctttgtcaacctacagcgagtacagatgattatgttagcagttggagaagttgaa
gataacatttttaaaaaaaggaaagatgatgaggagaacttcaaaagacgacaaaaagaa
aagagaaaaaggatgaagagggatcagccttcttttatccctggtggacagttttcccct
caagcattgggcagtggaaataggtctaatcctcagacaatcagtaaccccagacaagca
gccttcgaaatgagaatgcagaactcaactccttcagcatctcctaatactagtttcact
tctgatggcaccccatccccagcaggaggaattaaacgaaaagctgaagacagtgacagt
gaacctgagccagaggataatatcaggttatgggaagctggttggaaacagcgttactat
aagaacaaatttgatgttgatgcatctgatgagaaatttcgtcgtaaggttgtacggtct
tatgttgaagggctttgctgggttctcagatactattatcagggctgtgcttcttggaag
tggttttacccattccattatgcaccatttgcttccgacttcgaaggcattgcagacctg
ccctcagactttgagaagggcacaaaaccgttcagacctcttgaacaacttatgggtgta
tttccagctgctagtggtaactttttgccaccaacatggcagaagctcatgactgatcca
gaatcaagtataattgacttctaccctgaagattttgctatcgatttgaacgggaagaaa
tttgcttggcaaggtgttgctctgttgccatttgttgatgaacgccgcctgagagctgct
ttggaagaggtttaccctgatctcacttctgaagaaaaccgaagaaatagtctgggtggt
gaccttctctttgttggaaaaaatcacagcctttgtgacttcattgcagagctctataaa
tccagtactacagagccagttgatatgcccccagaactgtgccatggaatccagggaaaa
ctttcactgaatgaaaatccagttcttccagatcaagtagtgcagtctcctgttccaacc
ttgcgtgacctggcacagaattctgcagtcagtatcaatttcaaagatccgcagtttaac
gaagactttgttttcaaggctgtggtgctacctggggcaaaaaaacctctacctgttttg
aagccgggtgactgggaaaaaaccaacaacaatgggaggccatggaggccacagcttggt
tttaatagagacaggcagcctgttcacttggaccagtcagcattcagaacgttaggccat
gcaatgtcaagggaaagagggcagccaggaagtggaatgtacagcaatgcagcccctctt
ggagcttatcagggaaacccatacagaccgctcttttctggacaaccacagattcctaaa
ttgttgtcaaatctcaggcctccagaatcatggcgagggcctacacctttgtttcagcag
ccaccgcagagatatgacaggagttctggggctgctcctcttctagcgtggaaccgcatg
gtacaatcccaaaatgcagcattccaacaaaatcagtatcaaggagtaggtggaccaatg
aattacccacagagacctgaggatcggatggataggggaagacagggatatggccccggg
aggccctacccattaccacctcccgctggaagatacaactggaattag
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