KEGG   Alligator mississippiensis (American alligator): 102558630
Entry
102558630         CDS       T03087                                 
Symbol
RIF1
Name
(RefSeq) replication timing regulatory factor 1
  KO
K11138  telomere-associated protein RIF1
Organism
amj  Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:amj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amj03032]
    102558630 (RIF1)
DNA replication proteins [BR:amj03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    102558630 (RIF1)
SSDB
Motif
Pfam: Rif1_N ESF1
Other DBs
NCBI-GeneID: 102558630
NCBI-ProteinID: XP_006266218
LinkDB
Position
Un
AA seq 2310 aa
MSAAGPGPGPSLQPLLETLEDAAAPAGELTDALLTLVNRLTGEAGKEFTADVRKHFPRLC
KVFKAHISSENSELCSAALQALGFCVFNSKITSELSATEMQELLSTVSSIALKTSDKNTR
TRALWVISKQTFPSEIVGKEVPSIISTLEMILTKGDVHSMVVEYEALNVIIRLMEQAPTQ
MGEEAVRWAKLIIPLVVHSAHKVQLRGAAALEMGMPLLLQKQQEVAAITEHLMSTKLISE
LQKLFSTKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGSPVVKKIAFIA
WKSLIDNFALNPDILCSAKRLKLLMQPLSSIHVRTEALALTKLEVWWYLLVRLGPQLPAN
FEQVCVPLIQSTLSPDSSAILQGTLSRASATAAPTQKSGSYSFGSPGTPRLNFNSSIAGM
LVIPSIQLLGIEMLLHFLMGPDVLTFAQQSKLVLSLEPLQYPLISSPSFFCKHASTLINA
VQDGFIAIGKEVPDAMLNVVWKDMISYVKVAIESGHKKERQGSEVLTILLQALKNIVEST
ALPVQKTLSLIEITIKELPPKVLGSPAYQIADMDLLNGTPALFLIQLPFRTNLLEWCVTE
ERFFTNLEILVSCVLSGPTSPLAFSESVFSIINESAKQVENKEHLWRIWSIVVNPLTEWI
NKSNEVNQGDALEHNFNAVYNALLLPISHIFPVQEFPQPTMKSLLRTWSDLYRVFARCAS
LVATAEENLCCEELSAKIIAGLEHKDINSFSMVDSLTHIISVMVDCINFAPYGTKYQPKN
RSPQTPTDWSKKKREPLGKLASLFKLLVMLVNSFHVLSSKEINSESLISVGSSIIAVLHN
VISHVSLPSVIRTMFATLSKPLAVFYEKTKLTDVPKGYSGFSHKLEKLLAEIILCLQSHY
TGPYDSQLLKQLSPLLHVVFLHKSKQIRNQSAQFWNATFAKATALTYPEELKSILSQAKQ
KILLLLPGFESVEIVEESSGPFSDMTENSQWDAKISGIEVKLGGKRDSLLSQASEQKDKI
TNVHVTPAKLKLEFSSSKPKSDILLEEEKSADFVFIPPETKERILTEHQKEVLKTKRIDI
PAMYNNLDASQDTTLFSQYSQSQEDSLGKTPLIDIPKEENEKKLQDENMKSNVYNSETRT
PAENGQLSSAVERAAFVNTENKSITQVKENSDSKCEEDFEKGTTDAVLKELSAEDDSKKC
TSEIVSKEPSVGDENVSNSSNSSSSSDIISGTPQPASRRQSFITLEKFDSSENRPFSPSA
LSRLSGASGIIDMPDKQETIDIPKTPTKAEEPEEEKDRSTLEPETEGTVTATKKLSHRQN
KTELSDNRQSKLLTRSEEESNIQELAVALHTENKSELSTQVEEIECIPDTQSHTPNSTVI
ESIAIENKLFVDGGEEVGKSKGSNLDCKENTPPLVAVSSDLVNKDDNQIPHVAANQKALR
RSLRRRSEIAEATAGNQDKENSHQKTKRKEDEKSVQKKVPQVKEDSSQKQKLISEKGVDA
QIKVNKKENNLNEKTAEDDVGSKESCTSAGLEETNKSIRKVEDNLKSEMDHQDSGSDIMG
QKRSRPRYQTRRASQGLLSSIENSESDSSETREESAKKKKTGKWKNKSDSVENKVKEGKT
ESQNQELSLQENVTEIRNLPDTKIKDETNPDLPVDETTGITDLAKTSLGQNTDVEQNETS
VLTKALISPGTSEPVLKTRQENKSFDKQRNVEDCSGSDLVKFEAGTNNSDAALSSEKPLQ
IPGCQHKRSKRLRRSRSCDCCGEKSQQQEKSFTELKNTNINEISETKKTPMRTTVSTSEV
LPNSSDFDADSSVGPCATSTPLLPTKESSIFDSERGLKSESDLQGSASPVKGGDTENLPC
IKSELCDSVTETRECASQADRREECLTEYVSKEPKEERCLALENESKEPVCTEKKDIGEN
TQPEQLPDAERISNWFEETKTNEPENVQNTTEGNQNISVKTSSPQDSEMKEEGLIISEGE
VASTVPEKVTSDQEGGEGSDNMDSPQKMKNLDSVALVKVNESPNGVQTRCTWSPLASPST
SILKRGLKRQQEDDSPSPANKIRRVSFANPIYQEELADDIDRRSPVVRSFSSSNSSPSSR
SLKTSSSNQTKITEMAKESPSCPSECVYPALVGCKAPVDIILPQITSNIWARGLGQLIRA
KNIKTVGDLSSLTASEIKMLPIRSPKVSSVKKALKGYHEQQVKARGFEEIAALEDTEKPL
SVMEEKAFSTEEERLATDLVEPAVLNTDAQPRADLLSQISALAAQLTPEELHSYSGSQLF
EMQEKLGNMTNCIMKNLQSRWQSPPHEISD
NT seq 6933 nt   +upstreamnt  +downstreamnt
atgagcgctgccgggcctgggcccgggcccagcctgcagccgctgctggagacgctggag
gacgcggctgcgcccgcgggggagctcaccgacgcgctcctcaccctcgtcaatcgccta
actggtgaggcaggaaaagaattcactgcagacgttaggaaacactttcctcggctgtgt
aaagtatttaaggcacacatttctagtgaaaactcagagctgtgtagtgcagcattacaa
gctttaggattctgcgtgtttaactcgaagattacatctgaattatctgcaactgaaatg
caagaattactttcaacagtgagcagtattgctctaaaaacctcagacaaaaacactcgc
actcgagcactttgggtgatctctaagcagacatttccttctgaaattgttgggaaggag
gtgcccagtatcatttctacactagaaatgatacttactaaaggagatgtacattccatg
gttgttgaatatgaagcactaaatgttattatacgtctaatggaacaggctccaactcaa
atgggagaagaggctgtgaggtgggcaaagctgatcattcctttggttgtccattcggct
cataaggtgcaattgcgaggtgcagctgcattggagatgggtatgccattgttacttcag
aaacaacaagaagtggcagccatcactgaacatcttatgtctactaagctaatttcagaa
ctgcaaaaattattctcaacaaagaatgagacctatgtgctgaaactgtggcctttattt
gtcaagctacttggaaagacacttcatcgtagtggcagttttatcaactcattgttgcaa
ctggaagaacttggattccgtagtggatcaccagtggtaaagaaaatagccttcattgca
tggaagagtctgatagataattttgctctgaatccagatatattgtgcagtgcaaaaagg
ctgaaattgctaatgcagccgttgagctctatccatgtgagaacagaggctttggcattg
acgaaactggaggtttggtggtatttactggtgagacttggacctcagctgcctgccaac
tttgaacaggtttgtgttccattaatccaaagcactttaagtccagattcttctgctata
cttcaaggaactctttcccgtgcatcagccactgcagcacctacacagaaatcaggttct
tattcatttggaagtccaggcaccccacggcttaatttcaactccagcatagcaggaatg
ttggtgattccctccattcagctcttgggaattgaaatgctgcttcacttcttgatgggg
ccagatgttttgacttttgcccagcaaagcaaacttgtacttagtctagagcctctccag
tatccactgatcagtagcccttcctttttttgtaagcatgcaagcacgcttataaatgca
gttcaggatggcttcattgcaattggaaaagaagttcctgatgccatgctgaatgttgtc
tggaaggatatgatcagttatgtgaaggtagctattgagtcaggccataaaaaggagaga
cagggttcagaagtgttaacaatattgcttcaagccttaaagaacatagttgaatcaact
gcacttcctgtccagaaaacattgtcccttatagaaattacaattaaggaattgcctcca
aaagtgttgggatcaccagcataccagattgctgatatggatcttttaaatgggactcca
gctttgttcttaattcaactgcctttccgtactaatcttttggaatggtgtgtaacagaa
gagaggttcttcacaaatctagaaatccttgtgagttgtgttttatctggtcctacatct
cctttggcattcagtgaatctgtgttcagcatcattaatgaaagtgcaaaacaggtggaa
aataaggagcatctctggagaatatggagtattgtagttaacccactaactgaatggatt
aataagagtaatgaagtaaatcagggtgatgcactggaacacaactttaatgctgtttat
aatgcattattgctacctataagtcatatattccctgttcaggaatttccccagcccact
atgaagtctctgttgcgtacctggtcagacttatatagagtatttgcccgctgtgcatct
ttagtggcaacagcagaagaaaacttgtgctgtgaagaactttctgccaaaataatagct
ggactagaacataaagatataaatagtttctcaatggtggatagcctcacgcacatcata
tcagttatggtggactgcatcaattttgcaccatatggtactaaatatcagccgaaaaac
agatctccacagacaccaacagattggtctaagaagaaaagggagccacttggaaagctt
gcctccttatttaaacttctagtgatgttggtaaactctttccatgtgctcagttccaaa
gagatcaactcagaatcattaatctctgttggcagttcaattattgctgttcttcacaac
gttatcagccatgtttctttgccatcagtgatcagaactatgtttgcaactctgtcaaaa
ccactggcagtattttatgaaaaaacaaagcttactgatgtacccaaaggctacagtggt
ttcagccacaagttagaaaagctgttggcagagatcatcctgtgtttacagtcccactat
actgggccttatgacagtcaacttttaaagcagctttctccattgctgcatgtcgtgttt
cttcataagagtaaacagatacgcaaccaaagtgctcagttctggaatgcaacatttgct
aaggctacagcgttaacataccctgaagaattaaaatctatcttgagccaagccaagcag
aaaattctactcttattacctggttttgaaagtgttgagatagtggaagaatctagtggt
ccattttctgatatgacagaaaattcccagtgggatgcaaagataagcggaatagaagta
aaattgggtggaaaaagggattccttgctgtcccaggccagtgaacaaaaagacaagatt
actaatgttcatgtcacaccagcaaagttgaaactagaattttcatcttcaaagcctaaa
agtgatatactcttggaggaagagaaatctgctgattttgtgttcattcctccagaaaca
aaagagaggatattgacagaacaccaaaaagaagtacttaagacaaagagaattgacatt
cctgccatgtacaataatctggatgcatcccaagatactaccttattttctcaatacagt
cagagccaagaagattctttggggaaaactccattaatagacattccaaaagaagaaaat
gaaaagaagcttcaggatgaaaatatgaaaagtaatgtatacaatagtgaaacacgcaca
cctgcagagaatggccagttaagcagtgctgttgaaagagctgcctttgtgaatactgaa
aacaaatccattacccaagtgaaagagaactcagattcaaaatgtgaggaggattttgaa
aaaggtacaactgatgcagtcttgaaagagctttcagcagaagatgattcaaaaaaatgt
acaagtgaaatagtttcaaaagagccttcagtaggagatgaaaatgtgtcaaacagcagc
aacagttcatcttctagtgacataatttctggaacaccacaacctgcaagtagaaggcaa
tctttcattaccttggaaaaatttgatagttcagaaaacagaccctttagtccttctgca
ttaagtaggttgtcaggagcatctggaattattgatatgccagataaacaggaaaccata
gatataccaaagactcccaccaaagcagaagaacctgaggaggagaaggatagaagtact
ttagaaccagaaactgaaggaacagttactgcaacaaaaaaactaagtcacaggcaaaat
aaaactgagctcagtgacaataggcaatctaaattgttaacaagatcagaagaggagagt
aatatacaagagttggcggttgctctccacacggaaaataaatctgagctatctactcag
gtggaagagatagaatgtattccagatacacagtcacacactcccaattccacagtgata
gagagtatagcaatagagaataagctatttgtggatggtggtgaggaggtaggaaaaagt
aagggatcaaatctggattgtaaagaaaatacacctcccttggttgctgtatcaagtgac
ttagtaaataaagatgacaatcagattccacatgtggcagctaatcagaaagcattaagg
cgttctttaagaagacgatcagaaattgcagaagctacagcaggaaatcaagacaaagaa
aacagccaccaaaaaaccaaacgtaaagaagatgaaaagtctgtccaaaagaaggtgccg
caagttaaagaggactcctctcaaaagcagaaattaatttctgagaaaggtgtagatgca
caaataaaagtaaataaaaaagagaataacttaaatgagaagactgctgaagatgatgtt
ggttcaaaggagtcatgcacatcagcaggtcttgaagaaacgaacaaaagcatcaggaaa
gtggaagataatctgaagtctgaaatggatcatcaagattctgggtcagatataatgggt
cagaaaaggagtcgcccacgatatcagacaagaagagcatcacaaggtttactttccagc
atagaaaattctgaatctgatagctctgagacaagggaggaaagcgcaaagaagaagaaa
actggaaaatggaaaaataaaagtgattctgttgaaaacaaagtgaaagagggaaaaaca
gaaagccaaaatcaggagttatctttacaagaaaatgtaactgagattaggaacctgcct
gataccaaaattaaagatgaaacaaatcctgatctgcctgtggatgaaaccacaggaatt
acagacttagcaaaaacttcccttggacagaacacagatgtggagcaaaatgaaaccagc
gtactaacaaaagctctcataagcccaggtacatctgagccagttttgaaaacaaggcag
gaaaataaatcctttgataagcaaagaaatgtagaagactgtagtggaagtgatctggtc
aaatttgaagcaggaactaataattctgatgctgctctttcctccgagaaacctctgcag
atacctggctgccagcacaaaagaagcaagagattgagaaggtcaaggagctgcgattgc
tgtggggaaaagtcacaacagcaagaaaagtcattcactgaattaaaaaataccaatatt
aatgaaataagtgagactaaaaaaacacctatgcgaacaactgtgagtacatcagaagta
ttaccgaacagctcagattttgatgcagactcttctgtgggaccttgtgcaacaagcaca
ccattgcttcctactaaagaatctagtatctttgattcagaaagggggttaaaatctgag
agtgatttgcaaggaagtgcatctccagtgaagggtggagatactgaaaatttgccatgt
atcaagagtgaactttgtgattctgtaactgaaacacgagaatgtgctagtcaggctgac
agacgtgaagaatgtttgaccgagtatgtttccaaagagcccaaagaagagaggtgcctt
gctttggagaatgagagtaaagagccagtatgtacagaaaaaaaagacataggtgaaaat
acacaaccagagcaattacctgatgcagaaagaattagtaactggtttgaagaaacaaag
acaaatgagccagaaaatgttcagaacactacagaagggaatcagaacatttctgtaaag
accagcagtcctcaggatagtgagatgaaggaggaaggtttaataatcagtgagggtgaa
gttgcatctacagtacctgaaaaggtaacctcagaccaagagggtggagaaggaagtgac
aacatggattctccacagaagatgaaaaatcttgattctgtagctttggttaaagttaat
gaaagccctaatggagtgcagacccgttgcacatggtctcccttggcttctccatccact
agtattttaaagaggggtcttaaaagacagcaagaggatgattccccatcacctgctaac
aagattcgtcgagtctcttttgcaaatccaatttaccaagaggaattggcagatgatatt
gataggagaagtcctgttgttaggtctttttcttcctcaaatagttcaccatcttcacga
agtcttaaaacttcttccagtaaccaaaccaagattactgagatggccaaagaatcgccg
tcttgtccttcagagtgtgtgtaccctgccttggtaggctgtaaagcgccagtcgatatc
attttacctcagattacatcaaacatttgggcacggggactggggcagctcattcgagca
aagaacattaagacagtgggtgacctgagttccttgacagcatctgaaataaaaatgctt
cccatccgctctcctaaagtttccagtgttaaaaaggctttgaaaggatatcatgagcaa
caggtaaaggctcgtggatttgaggaaattgcagcccttgaagatacagagaagccatta
agtgttatggaggagaaggctttttctacagaggaagaaagacttgcaacagatttggta
gaaccagctgtcttgaacacagacgcacaacccagagcagaccttttgagccaaatcagt
gcccttgctgctcagctaactcctgaagagctccatagttattcaggaagtcagctcttt
gaaatgcaagagaaacttggtaatatgacaaactgtattatgaaaaatctacagtcccgc
tggcagtcaccaccccatgaaatttctgattag

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