KEGG   Alligator mississippiensis (American alligator): 102558634
Entry
102558634         CDS       T03087                                 
Symbol
NCBP1
Name
(RefSeq) nuclear cap binding protein subunit 1
  KO
K12882  nuclear cap-binding protein subunit 1
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03013  Nucleocytoplasmic transport
amj03015  mRNA surveillance pathway
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102558634 (NCBP1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102558634 (NCBP1)
   03015 mRNA surveillance pathway
    102558634 (NCBP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102558634 (NCBP1)
   03041 Spliceosome [BR:amj03041]
    102558634 (NCBP1)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     102558634 (NCBP1)
Spliceosome [BR:amj03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    102558634 (NCBP1)
SSDB
Motif
Pfam: MIF4G_like_2 MIF4G MIF4G_like Importin_rep_6
Other DBs
NCBI-GeneID: 102558634
NCBI-ProteinID: XP_006266780
UniProt: A0A151NE25
LinkDB
Position
Un
AA seq 794 aa
MSRRRHSDDSDGQTHKRRRTSEPSEIEERLESLICRVGEKSTSSLESNLEGLAGVLEADL
PNYKSKILRILCTVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKECLKVNMY
NEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWYVYAFLSSLPWVG
KELYEKKDAEIDRLLSQTESYLKRRQKIHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKK
DRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPVPRVIFRMFDYTDDPEGP
VMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLLSYPGNNKIPLNYHIVEVIFSELFQ
LPTPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTICVDRFINWFSHHL
SNFQFRWSWEDWSDCLTQDPEKSKAKFVKEVLEKCMRLSYHQRIIDIVPASFSVLSPANP
VCIYKYGDESNRSLPGYTVALCLTIAIKNKASNDEIFSILKDVPNPNQDDDDDEGFSFNP
LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMYEVWKNHPQMI
AVLVDKMIRTQIVDCAAVANWIFSSELTHDFTRFYIWEILHSTIRKMNKHVLKIQKELEE
TKARLARQHKRRDSDDDDYDDDRSSDREDGPLEEQIERLQEKVESAQSEQKNLFLVIFQR
FIMLLTEHLVRCETGGIDVVTPWYKSCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDH
HILAVFQQFCALQA
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgtcgcggaggaggcacagcgacgacagcgatgggcaaactcataaaaggaggagaaca
tccgagccatctgaaattgaagagagactagaatctttaatatgcagagtgggtgagaag
agtacttcatctttggagagcaatttggaaggcctagctggtgtcctggaggctgactta
ccaaactacaagagcaagatattaagaattctttgtacagttgcacgtctattaccagaa
aaacttactgtctacacaacactagttgggttgctgaatgccaggaactacaattttggt
ggggaatttgtagaagccatgattcgtcaactcaaagaatgtttgaaagtcaatatgtat
aatgaagctgtgtatttagttcgttttctttctgatcttgtgaattgtcatgtaatagct
gcaccttcaatggtagccatgtttgagaactttgtgagtgtgactcaagaggaggatgta
ccccaggtgcggagtgattggtatgtgtatgcatttctgtcatctctgccctgggtaggg
aaagaattgtatgagaagaaggatgcagagatagaccgcctcttatcacaaacagaaagc
tatttgaaacggcgtcagaaaattcatgtacccatgttgcaagtttggactgctgataaa
ccgcatccacaagaagagtacttagactgtctttgggctcaaattcagaagttgaaaaaa
gatcgctggcaagaaagacacattctgaggccctacctggccttcgacagcatcctctgt
gaagcattacagcacaacctgcctccttttactcctccacctcacactgaagactcagtt
tacccagtgccaagagttatctttagaatgtttgactatacagatgatcctgagggccct
gttatgcctggcagtcattctgttgaaagatttgtaatagaagagaatcttcattgcatc
atcaaatcccactggaaagagaggaagacttgtgctgcacagttactgagctatccagga
aataacaagatccctttgaactaccacatagttgaggtaatattttcagagttgtttcag
cttccaactccaccacacattgaagttatgtacacaacacttcttattgaactatgcaaa
cttcagcctggctctttaccacaagttcttgcgcaagccacagaaatgctgtatatgcgt
ttggatacaatgaatactatatgtgtagacaggttcattaattggttttctcatcatctg
agtaactttcagttccgttggagctgggaggattggtcagactgtcttacccaagaccct
gaaaagtctaaagccaaatttgtaaaagaagtcttggaaaaatgcatgagactttcctac
catcaacggataatagacattgttcctgcaagtttttctgtcttgagtcctgcaaatcca
gtgtgtatatacaagtatggagatgaaagcaacaggtcccttccaggatatactgttgca
ctctgtttgactattgctattaaaaataaagccagtaatgatgaaatcttcagcatctta
aaagatgtgcccaatcctaaccaggatgatgatgatgatgaagggttcagcttcaaccct
ctgaaaatagaagtttttgtacaaactctactccatctagctgccaagtccttcagccac
tccttcagtgccctcgcaaagtttcatgaagtcttcaaaacgcttgctgaaagtgatgag
gggaagctccatgtcctaagagttatgtacgaggtgtggaagaaccatccacagatgatt
gctgtgcttgttgacaagatgatccgaacacagattgtcgactgtgctgcagtagcaaac
tggatcttctcttcagagcttactcatgattttactaggttctatatctgggaaatctta
cactctacaattcgtaagatgaacaagcacgttctcaagatccaaaaggaactagaggag
accaaagcaagattagccagacagcacaaacgacgagacagcgatgatgatgactatgat
gatgaccgaagcagtgacagggaggatggaccattggaagagcaaatagaacgcttgcag
gaaaaagtggagtctgctcagagtgagcaaaagaatctcttccttgttatattccagcgt
ttcattatgttgttaactgagcatttggtgcgatgtgaaactggtgggattgatgtagtt
acgccctggtacaagagctgtatagagaggctgcagcagatcttcttgcagcatcaccag
attattcagcagtacatggtgaccctggagaaccttctgtttacagctgaactggaccat
cacatattggctgtatttcagcaattctgtgctttgcaagcttga

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