Alligator mississippiensis (American alligator): 102558634
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Entry
102558634 CDS
T03087
Symbol
NCBP1
Name
(RefSeq) nuclear cap binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03013
Nucleocytoplasmic transport
amj03015
mRNA surveillance pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102558634 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
102558634 (NCBP1)
03015 mRNA surveillance pathway
102558634 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102558634 (NCBP1)
03041 Spliceosome [BR:
amj03041
]
102558634 (NCBP1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
102558634 (NCBP1)
Spliceosome [BR:
amj03041
]
Common components
Common spliceosomal components
Cap binding complex
102558634 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Importin_rep_6
Motif
Other DBs
NCBI-GeneID:
102558634
NCBI-ProteinID:
XP_006266780
UniProt:
A0A151NE25
LinkDB
All DBs
Position
Un
AA seq
794 aa
AA seq
DB search
MSRRRHSDDSDGQTHKRRRTSEPSEIEERLESLICRVGEKSTSSLESNLEGLAGVLEADL
PNYKSKILRILCTVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKECLKVNMY
NEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWYVYAFLSSLPWVG
KELYEKKDAEIDRLLSQTESYLKRRQKIHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKK
DRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPVPRVIFRMFDYTDDPEGP
VMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLLSYPGNNKIPLNYHIVEVIFSELFQ
LPTPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTICVDRFINWFSHHL
SNFQFRWSWEDWSDCLTQDPEKSKAKFVKEVLEKCMRLSYHQRIIDIVPASFSVLSPANP
VCIYKYGDESNRSLPGYTVALCLTIAIKNKASNDEIFSILKDVPNPNQDDDDDEGFSFNP
LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMYEVWKNHPQMI
AVLVDKMIRTQIVDCAAVANWIFSSELTHDFTRFYIWEILHSTIRKMNKHVLKIQKELEE
TKARLARQHKRRDSDDDDYDDDRSSDREDGPLEEQIERLQEKVESAQSEQKNLFLVIFQR
FIMLLTEHLVRCETGGIDVVTPWYKSCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDH
HILAVFQQFCALQA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggaggaggcacagcgacgacagcgatgggcaaactcataaaaggaggagaaca
tccgagccatctgaaattgaagagagactagaatctttaatatgcagagtgggtgagaag
agtacttcatctttggagagcaatttggaaggcctagctggtgtcctggaggctgactta
ccaaactacaagagcaagatattaagaattctttgtacagttgcacgtctattaccagaa
aaacttactgtctacacaacactagttgggttgctgaatgccaggaactacaattttggt
ggggaatttgtagaagccatgattcgtcaactcaaagaatgtttgaaagtcaatatgtat
aatgaagctgtgtatttagttcgttttctttctgatcttgtgaattgtcatgtaatagct
gcaccttcaatggtagccatgtttgagaactttgtgagtgtgactcaagaggaggatgta
ccccaggtgcggagtgattggtatgtgtatgcatttctgtcatctctgccctgggtaggg
aaagaattgtatgagaagaaggatgcagagatagaccgcctcttatcacaaacagaaagc
tatttgaaacggcgtcagaaaattcatgtacccatgttgcaagtttggactgctgataaa
ccgcatccacaagaagagtacttagactgtctttgggctcaaattcagaagttgaaaaaa
gatcgctggcaagaaagacacattctgaggccctacctggccttcgacagcatcctctgt
gaagcattacagcacaacctgcctccttttactcctccacctcacactgaagactcagtt
tacccagtgccaagagttatctttagaatgtttgactatacagatgatcctgagggccct
gttatgcctggcagtcattctgttgaaagatttgtaatagaagagaatcttcattgcatc
atcaaatcccactggaaagagaggaagacttgtgctgcacagttactgagctatccagga
aataacaagatccctttgaactaccacatagttgaggtaatattttcagagttgtttcag
cttccaactccaccacacattgaagttatgtacacaacacttcttattgaactatgcaaa
cttcagcctggctctttaccacaagttcttgcgcaagccacagaaatgctgtatatgcgt
ttggatacaatgaatactatatgtgtagacaggttcattaattggttttctcatcatctg
agtaactttcagttccgttggagctgggaggattggtcagactgtcttacccaagaccct
gaaaagtctaaagccaaatttgtaaaagaagtcttggaaaaatgcatgagactttcctac
catcaacggataatagacattgttcctgcaagtttttctgtcttgagtcctgcaaatcca
gtgtgtatatacaagtatggagatgaaagcaacaggtcccttccaggatatactgttgca
ctctgtttgactattgctattaaaaataaagccagtaatgatgaaatcttcagcatctta
aaagatgtgcccaatcctaaccaggatgatgatgatgatgaagggttcagcttcaaccct
ctgaaaatagaagtttttgtacaaactctactccatctagctgccaagtccttcagccac
tccttcagtgccctcgcaaagtttcatgaagtcttcaaaacgcttgctgaaagtgatgag
gggaagctccatgtcctaagagttatgtacgaggtgtggaagaaccatccacagatgatt
gctgtgcttgttgacaagatgatccgaacacagattgtcgactgtgctgcagtagcaaac
tggatcttctcttcagagcttactcatgattttactaggttctatatctgggaaatctta
cactctacaattcgtaagatgaacaagcacgttctcaagatccaaaaggaactagaggag
accaaagcaagattagccagacagcacaaacgacgagacagcgatgatgatgactatgat
gatgaccgaagcagtgacagggaggatggaccattggaagagcaaatagaacgcttgcag
gaaaaagtggagtctgctcagagtgagcaaaagaatctcttccttgttatattccagcgt
ttcattatgttgttaactgagcatttggtgcgatgtgaaactggtgggattgatgtagtt
acgccctggtacaagagctgtatagagaggctgcagcagatcttcttgcagcatcaccag
attattcagcagtacatggtgaccctggagaaccttctgtttacagctgaactggaccat
cacatattggctgtatttcagcaattctgtgctttgcaagcttga
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