Alligator mississippiensis (American alligator): 102558646
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Entry
102558646 CDS
T03087
Symbol
RBM39
Name
(RefSeq) RNA binding motif protein 39
KO
K13091
RNA-binding protein 23/39
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102558646 (RBM39)
Spliceosome [BR:
amj03041
]
Common components
Common spliceosomal components
General mRNP proteins
102558646 (RBM39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
102558646
NCBI-ProteinID:
XP_006269207
LinkDB
All DBs
Position
Un
AA seq
522 aa
AA seq
DB search
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHDRKRSRSKERKRSRD
HDRKKSRSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQSEVLAAAASVQPLATQCFQL
SNMFNPQTEEEDGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAV
NALHGRWFAGKMITAAYVPLPTYHSLFPDSMTATQLLVPVRR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgatattgatattgaagcaatgcttgaagctccttacaagaaggatgagaac
aagttgagcagtgccaatggccatgaagaacgcagcaaaaagcgaaaaaagagcaagagt
cggagtcggagtcatgacaggaagaggagcagaagtaaggaacgcaaacggagtcgtgat
catgacaggaaaaaaagcagaagtcgggaaaggaagcgcagccgaagcaaagaacgcaga
cgtagccgttctagaagcagagatcgcagatttagaggccgctataggagcccatattct
ggtccaaaattcaacagtgccatcagagggaagattggtctgcctcacagcatcaaatta
agcagacggcgctccagaagcaaaagtccattcagaaaagacaagagccctgtcagagag
ccaattgataatctaacccctgaagagagagatgctcgaacagtattctgtatgcaacta
gctgcaagaattcggccaagagacttggaagaatttttctctactgtagggaaggttcgt
gatgtgcgaatgatttctgatagaaattccagacgttctaagggaattgcttacgtagaa
tttgttgatgttagttcagtgcccctggcaataggactaactggacagagagttctgggg
gtaccaatcatagtacaagcatcacaggccgagaaaaacagagcagcagcaatggccaat
aacctacaaaagggcagtgctggtcctatgcgactctatgtaggctcattacacttcaac
ataacagaagatatgcttcgtggaatctttgaaccatttggccgaattgaaagcattcag
ctgatgatggatagtgaaactggacgctccaaaggatatggatttataacgttctcagac
tcggaatgtgctaaaaaggccttggaacaactgaatggatttgagctagctggcaggcca
atgaaagttggacatgtaactgaacgcacagatgcgtccagtgccagttcatttttggat
agtgatgagttggaaagaactggaattgacttgggaacaactggtcgcctacagttgatg
gcaagacttgcagaaggtactggtttgcaaattcctccagctgcgcaacaagctctgcag
atgagtggctctttagcatttggtgctgtggcagatttacaaacacgactttcccagcag
agtgaagttctggctgcagctgcttctgtacaaccacttgcaacacagtgcttccagctc
tccaatatgtttaaccctcaaactgaagaggaggatggctgggatacagaaattaaggat
gatgtgattgaagaatgtaataaacatggaggagttattcacatctatgtagacaaaaat
tcagcacagggcaacgtatatgtgaaatgcccctcaattgctgcagcgattgcagctgtc
aatgcattacatggaaggtggtttgcaggtaaaatgattacagcagcatatgtacctctt
ccaacataccacagcctttttcctgattccatgactgcgacccagttactggttcctgtt
cgacgatga
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