Alligator mississippiensis (American alligator): 102558707
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Entry
102558707 CDS
T03087
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558707 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558707 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558707 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102558707 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102558707 (COL4A1)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102558707 (COL4A1)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102558707 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102558707
NCBI-ProteinID:
XP_014455776
LinkDB
All DBs
Position
Un
AA seq
1670 aa
AA seq
DB search
MRPWRGAGLVLAALLLVLSREPAEVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFP
GMQGPEGPPGPPGFKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPGIP
GCNGTKGERGPSGPPGLPGLTGSMGPPGPPGIKGDTGQVIGIIPTILRGEKGFPGHPGLP
GIPGLPGIQGPVGPAGIPGEPGPPGPPGPPGEKGHMGFSFQGPKGEKGEQGVVGPAGPQG
TVSEHKKNGSTVLCGNKGEPGEKGERGLSGQPGPSLKGEKGEPGKPGPRGKPGKDGEHGP
KGEPGPLGEYGFPGPPGNPGPKGDKGEQGFPGPPGSIIGTGTVDAFGEKGETGPPGFPGL
KGERGEKGFPGAPGLPGAPGLPTPGLQGPPGVPGDRGEKGDPGLSGISLPGPPGRDGLRG
PPGSPGPPGPPGNEILDCAPGEHGDPGPPGPDGQSGFRGETGQKGDKGDTCTTCDIAILP
GVQGPPGPKGFPGQTGAKGDRGLPGLDGIQGVPGPPGTPGLLGSPGAKGEPGDIYFDTSL
KGEKGTPGFPGSPGLPGREGRPGRDGLPGLQGPKGASGTIGLKGERGSPGPGGFPGIRGD
KGLPGPPGTGPAGPPGDKGEQGFPGNPGLPGLPGAKGEAGKAIPMPGLPGSAGLPGPPGF
PGSQGDKGNPGIPGRSGLPGEKGALGQPGIGFPGPPGPKGFPGQPGPPGQPGAPGRAGLD
GLPGIPGFQGQKGEPGLGLPGLKGLPGPQGPAGFPGPKGDAGLPGLRGEQGFPGVHGQTG
QQGEPGLPGIQGIPGPPGKPGIGPQGPPGPAGHPGPQGPPGLPGLKGDKGFPGVPGLDMP
GPKGDKGFHGQPGVPGMVGLPGLPGPQGKDGSPGPQGTKGEMGVMGTPGTPGFPGTPGSQ
GLPGEKGNRGFPGSQGPPGEIGFKGDKGERGLRGEPGSMNKTDMASLKGQKGDPGEKGTH
GQAGEKGIRGDYGDPGMPGKDGLPGTPGQPGPKGDPGLPGFPGDPGHPGQKGSTGDMGLP
GTPGEKGVQGVAGSPGRPGFPGVKGEKGDKGQAGFPGIGIPGSPGEKGEQGRTGGPGIPG
TKGEKGSGGMPGLPGTPGPKGSPGVVGYPGSPGSHGEKGEKGLPGLHGISGFKGQQGDPG
PPGSPGDSGEKGEPGYDGIPGVPGIKGDQGIPGRGLPGSSGAKGDKGAKGDVGFPGSPGS
PGIPGSKGEPGFVGPQGPHGQPGLPGLPGRPMEGPKGDRGPQGQPGLPGVPGPVGSPGLP
GLEGGKGEKGAHGWPGSPGRPGIKGDQGFQGMPGSPGLPGILGQKGDMGPQGVPGFPGAK
GSPGFPGLKGEHGDQGLPGSKGLQGPPGPPGLFQLIKGDQGTPGPMGPVGPKGFPGPQGP
KGQQGVTGSAGIPGSPGVPGFDGNPGQKGETGPFGPPGPRGYPGPPGPDGLPGAMGLPGA
ASVAHGFLVTRHSQTTEEPACPFGTKLMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIKPFISRCAVCEAPAMVIA
VHSQTVQIPLCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLLSNVSRCQVCMRKT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgtggcggggcgcggggctggtgctggccgcgctgctgctggtgctgagccgg
gagccggccgaggtgtccgccgcgggatgtagtggctgtggaaaatgtgactgcagtgga
gtgaaagggcaaaaaggtgaaagaggtttgcctggactacaaggtctgatagggtttcct
ggaatgcaaggacctgaaggtcctcctgggccaccaggatttaagggtgatactggagaa
ccagggctgccaggaacaaagggaacacgaggcccaccaggttcatcaggatatccagga
aaccccggccttcctggtatccctggacaagatggcccacctggtccacctggtatccca
ggttgcaatggcacaaagggtgaaagaggtccctctggtcctccaggcttacctggattg
actgggagcatgggacccccaggacctcctggaattaagggagatacaggccaagtaatt
gggatcataccaactatcctaaggggtgaaaaaggctttcctggccatcctggactacca
ggtataccaggattgccaggaatccaagggcctgttgggccagcagggattccaggagaa
ccaggtccaccagggccaccaggacctccaggagagaagggtcatatgggcttcagcttt
caaggaccaaaaggtgaaaagggtgaacaaggagttgtaggtcctgccggtccacaagga
actgtctcagaacacaaaaagaacgggagtacagtcttatgtggaaataagggagaacca
ggtgaaaaaggagagcgtggattgtcaggacaaccagggccaagtttgaaaggggaaaaa
ggtgaacctggaaaacctggcccacggggaaaacctggaaaagatggcgagcatggacca
aaaggagaaccgggaccattgggcgagtacggatttccagggccaccgggtaaccctggg
cctaagggggataagggagaacaaggttttccaggacctccaggatcaattataggcaca
ggaacagtggatgcctttggtgaaaaaggagagactggacctccaggttttccaggatta
aagggtgaaagaggtgaaaaaggttttccaggtgctccaggactcccaggtgctccaggt
ttacctaccccagggttgcaaggtccaccaggcgtacctggtgacagaggtgaaaagggt
gatcctggtctctctggaatttctttgcctgggccacctgggagagatggtttacgaggg
cctcctggctcaccaggtcctccgggcccaccaggaaatgaaatcttggattgtgcacct
ggagagcatggtgatcctggtcctcctgggcctgacggacaatcaggattcagaggagag
acaggacagaaaggtgataaaggtgacacttgcaccacatgcgatatagcaatacttcct
ggagtacaagggccacctggacccaaaggctttccaggacagacaggtgccaaaggtgat
aggggcttgcctggacttgatggtattcaaggagtgcctggacctccaggtacaccagga
ctgcttggtagcccaggggcaaagggagagcctggagatatttactttgatactagccta
aaaggtgaaaaaggaactcctggtttcccaggatcaccaggattacctggaagagaagga
agaccaggaagagatggcctaccaggtctccagggtcctaaaggggcctcgggtacaatt
ggcttgaaaggagaacgtggttcccctggtccaggtggatttccaggaatacgtggtgac
aaaggccttcctggacctccagggactggacctgctgggccacctggtgacaaaggggaa
cagggctttccaggaaacccaggtttaccaggccttccaggggcaaagggtgaagcagga
aaagccattcctatgcctggcctgccaggctcagctggtctcccaggaccacctggattc
cctggatcccaaggtgataaagggaatcctgggatcccaggaagatctgggcttccaggt
gaaaaaggtgctcttggacagccaggaataggattccctgggcctcctggtcccaaaggt
ttcccaggtcagcctggcccacctggtcagccaggggccccaggtcgtgctggcttggat
ggtttaccaggtataccaggttttcagggtcaaaaaggtgaacctggattgggtctccca
ggtctcaaggggctaccaggcccacagggcccagctggtttccctggacccaagggagat
gcaggactgcctggcttacgaggagaacaagggtttccaggtgtacatggccagacagga
cagcaaggtgagccaggtctgcctggaatacaaggtattccgggtccaccaggtaaacca
ggaataggccctcaagggccccctggaccagcaggacatccaggaccccaaggaccacca
ggacttcctgggctaaagggagataagggtttcccaggtgttccaggactagatatgcca
ggacccaaaggagataagggtttccatggtcaacctggtgtacctggtatggtaggtttg
cctggtctccccggtccacaagggaaagacggatctccaggtcctcaaggcaccaaagga
gaaatgggagttatgggaactcctggaacaccaggttttcctgggacccctggaagtcaa
ggattgcctggtgaaaaaggtaatcgaggttttccaggttcgcaagggccaccaggtgaa
attggctttaagggagataaaggtgaaagaggcctgagaggagagccaggatccatgaat
aaaacagatatggcaagtcttaaaggccagaaaggagacccaggagagaaaggtacacat
ggacaagcaggagaaaaaggtatacgaggggactatggtgacccaggcatgccagggaag
gatggtttacctggtacccctggacagccagggccaaaaggtgatccaggccttccaggg
tttccaggtgacccaggacatccaggacaaaaaggatcaactggagacatgggactgcca
ggaacaccaggagaaaaaggtgtgcaaggtgttgcaggttcaccaggtaggccagggttc
ccaggagtgaaaggtgaaaaaggagacaaaggccaggctggttttccagggattggcatt
ccagggtctcctggtgagaagggagaacaagggagaacaggtggtccaggcatacctggg
acaaaaggtgaaaaaggtagcggtggaatgccaggactgcctggtacccctggtccaaaa
ggatcacctggtgttgtaggatatccaggtagcccaggtagccatggggagaagggtgaa
aaaggactccctggcttgcatggcatctcaggcttcaaaggacagcaaggtgaccctggc
ccaccaggttctcccggtgatagtggagagaaaggtgaaccaggttatgatggaatccca
ggtgttcctggtatcaagggtgatcaaggtattccagggagaggacttccaggaagttca
ggtgcaaagggagataaaggggcaaaaggtgatgtgggttttccaggatccccaggaagc
ccggggatcccaggctcaaaaggagaaccaggatttgttggcccacagggtcctcatggt
caaccaggtcttcctggactcccaggcagaccgatggaaggccctaaaggagacagagga
ccccaaggccaacctggactaccaggtgtacccggtccagtgggatccccaggacttcca
ggactggaaggtggcaaaggagaaaaaggagcccatggttggcctggatctcctggaaga
cctggaatcaaaggtgatcagggatttcaaggaatgcctggtagtcctggtttaccaggc
attcttggtcaaaagggtgatatgggacctcaaggtgttccaggatttccaggtgcgaaa
ggatctcctggcttcccaggtctcaaaggagaacatggtgaccagggtctccctggatca
aaaggtttacaaggtccacctggtcctccaggtctttttcagttgattaaaggggatcaa
ggcacacctggccctatgggacctgttggtcctaaaggattccctggccctcagggtcca
aaaggacagcaaggagtcacaggatctgcaggtatacctggatcacctggtgtcccaggg
tttgatggcaaccctggtcagaaaggggaaactggtccttttggtcctccaggcccaaga
ggatacccaggcccaccaggccctgatggtttacctggggcaatgggtttaccaggtgca
gcatctgttgctcatggtttccttgttaccagacacagtcaaaccactgaagaaccagca
tgtccatttggaactaaactcatgtactatggttactccttgctttatgtacaaggcaat
gaaagggcacatggtcaggatttgggcacagcaggaagctgtcttcgtaaatttagcaca
atgcctttcttattttgcaacatcaacaatgtatgcaactttgcatcaaggaatgactat
tcctactggctgtctactcctgaacccatgccaatgagtatggctcctatcacaggtgac
aatatcaagccattcatcagtcggtgcgctgtatgcgaggctcctgccatggtaatagca
gttcacagtcaaacggttcaaataccattatgccctgaaggctggagttcactttggatt
ggttactcctttgtaatgcataccagcgctggtgccgagggctctgggcaggctctggcg
tctccaggttcttgtttagaggagttccgcagtgctccttttatagaatgccatggtcgg
ggaacttgtaactactacgcaaatgcttacagcttctggcttgccactatagagagaaat
gagatgttcaggaaacctactccttcaactctgaaagcaggggacctactctcaaatgtt
agccgatgtcaagtctgtatgaggaaaacataa
DBGET
integrated database retrieval system
