Alligator mississippiensis (American alligator): 102558707
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Entry
102558707 CDS
T03087
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04382
Cornified envelope formation
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04518
Integrin signaling
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558707 (COL4A1)
04518 Integrin signaling
102558707 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558707 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558707 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102558707 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102558707 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102558707 (COL4A1)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102558707 (COL4A1)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102558707 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102558707
NCBI-ProteinID:
XP_014455776
LinkDB
All DBs
Position
Un
AA seq
1670 aa
AA seq
DB search
MRPWRGAGLVLAALLLVLSREPAEVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFP
GMQGPEGPPGPPGFKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPGIP
GCNGTKGERGPSGPPGLPGLTGSMGPPGPPGIKGDTGQVIGIIPTILRGEKGFPGHPGLP
GIPGLPGIQGPVGPAGIPGEPGPPGPPGPPGEKGHMGFSFQGPKGEKGEQGVVGPAGPQG
TVSEHKKNGSTVLCGNKGEPGEKGERGLSGQPGPSLKGEKGEPGKPGPRGKPGKDGEHGP
KGEPGPLGEYGFPGPPGNPGPKGDKGEQGFPGPPGSIIGTGTVDAFGEKGETGPPGFPGL
KGERGEKGFPGAPGLPGAPGLPTPGLQGPPGVPGDRGEKGDPGLSGISLPGPPGRDGLRG
PPGSPGPPGPPGNEILDCAPGEHGDPGPPGPDGQSGFRGETGQKGDKGDTCTTCDIAILP
GVQGPPGPKGFPGQTGAKGDRGLPGLDGIQGVPGPPGTPGLLGSPGAKGEPGDIYFDTSL
KGEKGTPGFPGSPGLPGREGRPGRDGLPGLQGPKGASGTIGLKGERGSPGPGGFPGIRGD
KGLPGPPGTGPAGPPGDKGEQGFPGNPGLPGLPGAKGEAGKAIPMPGLPGSAGLPGPPGF
PGSQGDKGNPGIPGRSGLPGEKGALGQPGIGFPGPPGPKGFPGQPGPPGQPGAPGRAGLD
GLPGIPGFQGQKGEPGLGLPGLKGLPGPQGPAGFPGPKGDAGLPGLRGEQGFPGVHGQTG
QQGEPGLPGIQGIPGPPGKPGIGPQGPPGPAGHPGPQGPPGLPGLKGDKGFPGVPGLDMP
GPKGDKGFHGQPGVPGMVGLPGLPGPQGKDGSPGPQGTKGEMGVMGTPGTPGFPGTPGSQ
GLPGEKGNRGFPGSQGPPGEIGFKGDKGERGLRGEPGSMNKTDMASLKGQKGDPGEKGTH
GQAGEKGIRGDYGDPGMPGKDGLPGTPGQPGPKGDPGLPGFPGDPGHPGQKGSTGDMGLP
GTPGEKGVQGVAGSPGRPGFPGVKGEKGDKGQAGFPGIGIPGSPGEKGEQGRTGGPGIPG
TKGEKGSGGMPGLPGTPGPKGSPGVVGYPGSPGSHGEKGEKGLPGLHGISGFKGQQGDPG
PPGSPGDSGEKGEPGYDGIPGVPGIKGDQGIPGRGLPGSSGAKGDKGAKGDVGFPGSPGS
PGIPGSKGEPGFVGPQGPHGQPGLPGLPGRPMEGPKGDRGPQGQPGLPGVPGPVGSPGLP
GLEGGKGEKGAHGWPGSPGRPGIKGDQGFQGMPGSPGLPGILGQKGDMGPQGVPGFPGAK
GSPGFPGLKGEHGDQGLPGSKGLQGPPGPPGLFQLIKGDQGTPGPMGPVGPKGFPGPQGP
KGQQGVTGSAGIPGSPGVPGFDGNPGQKGETGPFGPPGPRGYPGPPGPDGLPGAMGLPGA
ASVAHGFLVTRHSQTTEEPACPFGTKLMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIKPFISRCAVCEAPAMVIA
VHSQTVQIPLCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLLSNVSRCQVCMRKT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgtggcggggcgcggggctggtgctggccgcgctgctgctggtgctgagccgg
gagccggccgaggtgtccgccgcgggatgtagtggctgtggaaaatgtgactgcagtgga
gtgaaagggcaaaaaggtgaaagaggtttgcctggactacaaggtctgatagggtttcct
ggaatgcaaggacctgaaggtcctcctgggccaccaggatttaagggtgatactggagaa
ccagggctgccaggaacaaagggaacacgaggcccaccaggttcatcaggatatccagga
aaccccggccttcctggtatccctggacaagatggcccacctggtccacctggtatccca
ggttgcaatggcacaaagggtgaaagaggtccctctggtcctccaggcttacctggattg
actgggagcatgggacccccaggacctcctggaattaagggagatacaggccaagtaatt
gggatcataccaactatcctaaggggtgaaaaaggctttcctggccatcctggactacca
ggtataccaggattgccaggaatccaagggcctgttgggccagcagggattccaggagaa
ccaggtccaccagggccaccaggacctccaggagagaagggtcatatgggcttcagcttt
caaggaccaaaaggtgaaaagggtgaacaaggagttgtaggtcctgccggtccacaagga
actgtctcagaacacaaaaagaacgggagtacagtcttatgtggaaataagggagaacca
ggtgaaaaaggagagcgtggattgtcaggacaaccagggccaagtttgaaaggggaaaaa
ggtgaacctggaaaacctggcccacggggaaaacctggaaaagatggcgagcatggacca
aaaggagaaccgggaccattgggcgagtacggatttccagggccaccgggtaaccctggg
cctaagggggataagggagaacaaggttttccaggacctccaggatcaattataggcaca
ggaacagtggatgcctttggtgaaaaaggagagactggacctccaggttttccaggatta
aagggtgaaagaggtgaaaaaggttttccaggtgctccaggactcccaggtgctccaggt
ttacctaccccagggttgcaaggtccaccaggcgtacctggtgacagaggtgaaaagggt
gatcctggtctctctggaatttctttgcctgggccacctgggagagatggtttacgaggg
cctcctggctcaccaggtcctccgggcccaccaggaaatgaaatcttggattgtgcacct
ggagagcatggtgatcctggtcctcctgggcctgacggacaatcaggattcagaggagag
acaggacagaaaggtgataaaggtgacacttgcaccacatgcgatatagcaatacttcct
ggagtacaagggccacctggacccaaaggctttccaggacagacaggtgccaaaggtgat
aggggcttgcctggacttgatggtattcaaggagtgcctggacctccaggtacaccagga
ctgcttggtagcccaggggcaaagggagagcctggagatatttactttgatactagccta
aaaggtgaaaaaggaactcctggtttcccaggatcaccaggattacctggaagagaagga
agaccaggaagagatggcctaccaggtctccagggtcctaaaggggcctcgggtacaatt
ggcttgaaaggagaacgtggttcccctggtccaggtggatttccaggaatacgtggtgac
aaaggccttcctggacctccagggactggacctgctgggccacctggtgacaaaggggaa
cagggctttccaggaaacccaggtttaccaggccttccaggggcaaagggtgaagcagga
aaagccattcctatgcctggcctgccaggctcagctggtctcccaggaccacctggattc
cctggatcccaaggtgataaagggaatcctgggatcccaggaagatctgggcttccaggt
gaaaaaggtgctcttggacagccaggaataggattccctgggcctcctggtcccaaaggt
ttcccaggtcagcctggcccacctggtcagccaggggccccaggtcgtgctggcttggat
ggtttaccaggtataccaggttttcagggtcaaaaaggtgaacctggattgggtctccca
ggtctcaaggggctaccaggcccacagggcccagctggtttccctggacccaagggagat
gcaggactgcctggcttacgaggagaacaagggtttccaggtgtacatggccagacagga
cagcaaggtgagccaggtctgcctggaatacaaggtattccgggtccaccaggtaaacca
ggaataggccctcaagggccccctggaccagcaggacatccaggaccccaaggaccacca
ggacttcctgggctaaagggagataagggtttcccaggtgttccaggactagatatgcca
ggacccaaaggagataagggtttccatggtcaacctggtgtacctggtatggtaggtttg
cctggtctccccggtccacaagggaaagacggatctccaggtcctcaaggcaccaaagga
gaaatgggagttatgggaactcctggaacaccaggttttcctgggacccctggaagtcaa
ggattgcctggtgaaaaaggtaatcgaggttttccaggttcgcaagggccaccaggtgaa
attggctttaagggagataaaggtgaaagaggcctgagaggagagccaggatccatgaat
aaaacagatatggcaagtcttaaaggccagaaaggagacccaggagagaaaggtacacat
ggacaagcaggagaaaaaggtatacgaggggactatggtgacccaggcatgccagggaag
gatggtttacctggtacccctggacagccagggccaaaaggtgatccaggccttccaggg
tttccaggtgacccaggacatccaggacaaaaaggatcaactggagacatgggactgcca
ggaacaccaggagaaaaaggtgtgcaaggtgttgcaggttcaccaggtaggccagggttc
ccaggagtgaaaggtgaaaaaggagacaaaggccaggctggttttccagggattggcatt
ccagggtctcctggtgagaagggagaacaagggagaacaggtggtccaggcatacctggg
acaaaaggtgaaaaaggtagcggtggaatgccaggactgcctggtacccctggtccaaaa
ggatcacctggtgttgtaggatatccaggtagcccaggtagccatggggagaagggtgaa
aaaggactccctggcttgcatggcatctcaggcttcaaaggacagcaaggtgaccctggc
ccaccaggttctcccggtgatagtggagagaaaggtgaaccaggttatgatggaatccca
ggtgttcctggtatcaagggtgatcaaggtattccagggagaggacttccaggaagttca
ggtgcaaagggagataaaggggcaaaaggtgatgtgggttttccaggatccccaggaagc
ccggggatcccaggctcaaaaggagaaccaggatttgttggcccacagggtcctcatggt
caaccaggtcttcctggactcccaggcagaccgatggaaggccctaaaggagacagagga
ccccaaggccaacctggactaccaggtgtacccggtccagtgggatccccaggacttcca
ggactggaaggtggcaaaggagaaaaaggagcccatggttggcctggatctcctggaaga
cctggaatcaaaggtgatcagggatttcaaggaatgcctggtagtcctggtttaccaggc
attcttggtcaaaagggtgatatgggacctcaaggtgttccaggatttccaggtgcgaaa
ggatctcctggcttcccaggtctcaaaggagaacatggtgaccagggtctccctggatca
aaaggtttacaaggtccacctggtcctccaggtctttttcagttgattaaaggggatcaa
ggcacacctggccctatgggacctgttggtcctaaaggattccctggccctcagggtcca
aaaggacagcaaggagtcacaggatctgcaggtatacctggatcacctggtgtcccaggg
tttgatggcaaccctggtcagaaaggggaaactggtccttttggtcctccaggcccaaga
ggatacccaggcccaccaggccctgatggtttacctggggcaatgggtttaccaggtgca
gcatctgttgctcatggtttccttgttaccagacacagtcaaaccactgaagaaccagca
tgtccatttggaactaaactcatgtactatggttactccttgctttatgtacaaggcaat
gaaagggcacatggtcaggatttgggcacagcaggaagctgtcttcgtaaatttagcaca
atgcctttcttattttgcaacatcaacaatgtatgcaactttgcatcaaggaatgactat
tcctactggctgtctactcctgaacccatgccaatgagtatggctcctatcacaggtgac
aatatcaagccattcatcagtcggtgcgctgtatgcgaggctcctgccatggtaatagca
gttcacagtcaaacggttcaaataccattatgccctgaaggctggagttcactttggatt
ggttactcctttgtaatgcataccagcgctggtgccgagggctctgggcaggctctggcg
tctccaggttcttgtttagaggagttccgcagtgctccttttatagaatgccatggtcgg
ggaacttgtaactactacgcaaatgcttacagcttctggcttgccactatagagagaaat
gagatgttcaggaaacctactccttcaactctgaaagcaggggacctactctcaaatgtt
agccgatgtcaagtctgtatgaggaaaacataa
DBGET
integrated database retrieval system
