Alligator mississippiensis (American alligator): 102559199
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Entry
102559199 CDS
T03087
Symbol
TAF4
Name
(RefSeq) TATA-box binding protein associated factor 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102559199 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102559199 (TAF4)
03036 Chromosome and associated proteins [BR:
amj03036
]
102559199 (TAF4)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102559199 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
102559199 (TAF4)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
102559199 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
102559199
NCBI-ProteinID:
XP_006274382
LinkDB
All DBs
Position
Un
AA seq
1110 aa
AA seq
DB search
MAAGSDLLDEVFLNTEVDEKVVSDLVGSLESQLAASAHHHPPHKAQEPLRAAGGLLGNHV
VSGSGSGGSSPSPSPAGAGAGGGGGGGAHVHSEGGGKMGLSAPEVPKAGAGGVQGGVINH
NTRSQSSALDGATTTSTSTTTAAATAAAAGGGGGSEVTAAPGTLSQGKSVVISTMATSLS
TRNGKIGTTTVQTLNGSNVVMNSHHSGSAAFSGTPATANPASAPAVAPLVNNGPGSVGKA
NTVNAVLPSASSTVIQTSFLSTAVSSASSSPTVISSQPPPSIGSGGATVALVRPPIHTAG
PTVAAAAAATQNGSNTVINSTISVGNFPAVAAATVGSGVALQTSLVNSQPGSSVPAAPTT
QVIKSESPKTIVQAVSQQQTLAASGQPSTTGGNMIIGQTMQAGLSNVAPNPGGIPPAAPG
TPTGMAKGTANTVAQNLPRTPAATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGM
VLVRSENGQFLMIPQQALAQMQAQAHAQSQSQNTMTPRPATPTSAPPVQISAVQAPGAPI
IARQVTPTTIIKQVSQAQTTVQPTTTLQRPPVVQSQIVLGGTAQTTTLGTATAVQTGTAQ
RTVQGATAASTAATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLDGKIE
AEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQQPTTQATTALTA
VMLSGSVQRTAGKATATVTSTLQQPVISITQPTQVGVSKQGQSTPLVIQQSQKAGTLIRP
PQVTLTQTPMVTLRQPHSRIMLTTPQQIQLNQLQTVPVVKPTVLPGSKAISTISMQAAAA
QKNKLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDEAFLFS
APLQRRILEIGKKHGITDIHPDVVSYVSHAAQQRLQNLVEKLSETAQQKNISYKDDERYE
QASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQE
LAQMRQRDANLTALAAIGPRKKRKVDSPGSGSGTEGSGTSSAVPGSSGVGTTRQFTRQRI
TRVNLRDLIFCLENERETSHSLVLYKAFLK
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatctgctggatgaggttttcctgaacacggaggtggacgagaag
gtggtgagcgacctggtgggctccctggagtcgcagctggcggcctccgcccaccaccac
ccgccccacaaggcgcaggagccgctgcgggccgccggggggctgctggggaaccatgtt
gtgagcggcagcggcagcggcggcagcagcccgagccccagcccggcgggagcgggagca
ggaggcggcggcggcggcggcgcccatgtccacagcgagggcggaggcaagatggggctc
agcgcccccgaggtccccaaagcaggagctggaggagtgcaagggggtgttattaaccat
aacaccaggtcccagagttcagctctggatggagccacaacgaccagcaccagcaccacc
actgcagcagctacagcagcagctgcaggaggaggaggaggatctgaagttactgctgct
ccagggaccctcagtcagggcaaatcggtggttatcagcaccatggcaacctccttgtcc
accaggaatggcaaaattgggaccacaaccgtgcaaactttgaatgggagtaatgtggtg
atgaactctcaccactccggaagtgctgctttctctgggactcctgcaactgctaatcct
gcttctgcacctgctgttgcccctctagttaacaatggacctggatcggtggggaaagca
aatactgttaacgctgttttgccatcagcttccagcactgtcatccagacttctttcctc
agcactgctgtgtcctctgcctcttcgtcacccacagtgatctcctcacagccaccacca
agcattggaagcgggggggctactgtagcactggtgaggccaccgattcatacagcagga
cccacggttgctgcagctgctgcagccacccagaatgggagcaatactgtgatcaattca
accatcagtgtggggaattttcctgctgttgctgcagccactgtgggatctggagttgcc
ctccagacatcgcttgtgaacagccagcctggttccagtgtgccggcagcccccaccacg
caggtcatcaaatcggagtctcctaaaactatagtgcaggcagtatcccaacagcagaca
ctggctgctagtggccagcccagtactacagggggtaacatgatcattgggcaaactatg
caagctgggctctctaatgtggcccccaatcctggtgggatacctccagcagctcctggt
actcctacggggatggctaagggcactgccaatacagtggcacaaaatctgccaaggact
ccagcagcaacgacaagtggtatcagagcaactttgactcctacagttttagcacctcgt
ctgcctcagccacctcagaatccaactaatattcagaactttcagttgccaccaggcatg
gtccttgtacgtagtgagaatgggcagttcctgatgattcctcaacaagcattggcgcag
atgcaggcacaggcacatgcccagtcccagtctcagaataccatgactcctcgtccggca
acacctaccagtgctcctccagtacagatctcggcagtccaggctcctggagcacctata
attgcacggcaggtgacaccaactactattatcaaacaagtctctcaggctcagacaact
gtacaacccacaacaacgctacagcgtcctcctgtagtacagtctcagattgttctgggt
ggtactgcacaaacaactacactaggaacagcaacagctgtacagactggaactgctcaa
agaacagtgcaaggagcaacagcagcctccactgctgccacagaaactatggaaaatgtg
aagaaatgcaagaattttctgtccacattaataaaactggcttcatctggaaaacagtct
tcagaaactgcagcaaatgtcaaagagctagtgcagaacttgttggatggcaaaattgaa
gcagaagattttaccagtaggctgtaccgagaacttaattcttcacctcaaccttacctt
gtgcctttcctgaagaggagtttacctgccttgagacagttaaccccagactcagcggct
tttattcagcaaagtcagcagcagcagcccacgacgcaagcaacaactgctcttacagca
gtgatgctgagcggctcagttcagcgcacagcggggaaggccactgccactgtaacgagt
actcttcaacaacctgtaatcagtataacacagcctacgcaagttggggttagcaaacaa
gggcaatctacaccactggttatccaacagtctcaaaaagcagggacattaataaggcct
ccacaggtaacgttgacacaaacccctatggtaacattgcggcaaccccatagtcgtatt
atgctcacaactcctcaacaaattcaattgaatcaacttcagacagtacctgtggtaaaa
ccaacagtattacctggaagcaaagctatttccactatttcaatgcaagcagctgccgct
caaaagaataaattgaaagaacctggaggaggctcttttagggatgatgatgatattaat
gacgttgcatcaatggctggagtcaacctatcagaagagagtgcacggatattggcaaca
aactcagaattagtgggcacgttaacaaggtcttgtaaagatgaagccttcctcttttca
gcacctttgcaaagaaggatattagaaataggtaaaaaacatgggataacggatatccat
cctgatgtagttagctatgtgtctcatgctgcacaacagcgattacaaaatcttgtggaa
aaattatcagagactgcccagcaaaagaatatttcttacaaggatgatgaaagatatgag
caagcaagtgatgttcgggctcagctcaagttctttgaacaacttgatcaaatagaaaaa
cagagaaaagatgaacaagaaagggaaattttaatgcgcgcagcaaagtctcggtctaga
caagaagatccggaacaacttaggttgaaacagaaggccaaggagatgcagcaacaagag
ctagcacaaatgagacagagggatgccaacttaactgcattagctgcaattggtcctagg
aagaaaaggaaagttgattcaccaggatctgggtcggggacagagggatccggtacaagc
tcagcagtcccaggcagttctggagttggaacaaccaggcagtttacgcgacaaaggata
acgcgggtgaacctcagggacctcatattttgtttagaaaatgagcgcgagacaagccat
tcactagtgctatataaagcattccttaagtaa
DBGET
integrated database retrieval system
