Alligator mississippiensis (American alligator): 102559459
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Entry
102559459 CDS
T03087
Symbol
SCRIB
Name
(RefSeq) scribbled planar cell polarity protein
KO
K16175
protein scribble
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102559459 (SCRIB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
LRR_14
LRR_8
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_LRWD1
LRR_9
Motif
Other DBs
NCBI-GeneID:
102559459
NCBI-ProteinID:
XP_019351916
LinkDB
All DBs
Position
Un
AA seq
1802 aa
AA seq
DB search
MTLGRDNVPWLLGFLVAVEPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDISRNDI
PEIPESIKFCKSLEIADFSGNPLSRLPEGFTQLRSLGHLALNDVSLQILPSDIGNLANLV
TLELRENLLKTLPTSLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPP
ELGNLRRLVCLDVSENKLEQLPGEISGLAALTDLLLSQNLLECIPDGIGQLKQLSILKVD
QNRLTEMSESIGDCENLSELILTENMLTALPKSLGKLTKLTNLNADRNRLTALPAEIGGC
ASLNVLSLRDNRLVLLPPELASTTELHVLDVAGNRLQHLPFALTNLNLKALWLAENQSQP
MLKFQTEDDEKTGEKVLTCYLLPQQPSPSLENLLQNSVDDSWMDTNLNRVSVIQFLDEPK
ADDDDEAGAEKRGLQRRATPHPSELKVMKKVIEVRRNEAYAAKPDMDLDSPNSEEKRLSA
TSNHSEDSHVSNSTASADFKGEEEKEGGKGGVLHSRQGPETRELNQMAAPKAEAEQEVEE
EADQEDDLEMEYNEPTVHFAEDTLMRSDDEDDDRPFPVEKQRLIRKDTPHYKKHFKITKL
PKPEAVVALLQGLNSDGVPKEEEEEPGGCSDGAEPEETEEAWDEDDVKNGATSTQPSVKG
VSFDQANNLLIEPARIEEEELTLTIVRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEE
GPAARAGVRVGDKLLEVNGVALHCAEHHVAVEALRGSGSSVSMTVLRERMVEPENAITVT
PLRPEDDYSPRERRGGLRFPDRPEGTPSAERCSTCLVRNEKGLGFSIAGGKGSTPYRVGD
TGIFISRIAEGGAAHRDGTLRVGDRVISINGVDMTEARHDQAVALLTASSPTIVLLVERE
GAEQPSEGDSPMVPRVRAHSPPPPPSQGDSPPEETPPLPRNHLPKGLEDQYPIEEVHLVK
AGGPLGLSIVGGSDHSSHPFGIHEPGVFISKVIPRGLASRSGLRVGDRILEVNGIDLRHA
THQEAVNALLSNSQELTMLVRRDPPPPGMQEICIEKAPGEKLGISIRGGAKGHAGNPFDP
TDEGIFISKVSSSGAAARDGRLKVGMRILEVNHQSLLGMTHTEAVQILRSVGDTLLVLVC
DGFDPKAAAAIEMSPGIIANPFAAGIGRKNSLESISSIDRDLSPEELEILQKEMEMVREA
TQWEREEMEKVERMRREREAATQQLEEEAENITGEPLRLDYRTLAALPSSGLQRVPRAAP
AGESGSGSSRREAPYSPSSQQASISFTPLPDDSKATKPGVIQPLSRVRQSTAQPSSGGRD
SPNPFQLPELCAGVPNTPRAPSPPSPDEVPVNVKQAYKTFAAVPLSHPLLESQELHGQTS
TEKFKATHEVPSPGELHSPEQRSFRERQKYFEIEVKQQQVEKPPKRVSLVGEDDLKKMKE
EEARKLQQKRAVLLEEEEEEEDVGKLTPDLSTQSTVIIEGVEYKIERLNGRSPQSPTARF
PEAAENSSSQRNSLEEGFRPEQRPNSMSGLSPVYPGAGGEPGAPVRTAKAERRHQERLRM
QSPELLSSQDKELSPAERRALEAEKRAMWRAARSSALEDSIKQYEQDLARKLYQSRQRVP
APGARPAQVLSPVQSHATRTLGPGSQSSMKSLEQDALKAQMVIAKSKEGKKRSTLEQLAE
SPSPAPTPSPTPLEDCSPRTVTSPGRLSMSEKKFDYREFAAIPSSKPVYEIQSPDAADGL
RYVDDVNSSVPQEQDGQPEEEELLVTRDPSAPNASALEDVALYSSKRKLRHGRRSLEAAV
PT
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgggcgggataacgtgccctggctcttggggttcctggtggccgtagagcct
ttcttccggctgctgaacctgcgcaagctgggcctgagcgacaatgagatccagaggctg
cccccagaggtggccaacttcatgcagctggtggagctggatatctcccgcaatgacatt
ccagaaattcctgaaagcatcaaattctgcaaatccttggagatcgctgacttcagtggg
aacccgctctccaggcttcccgagggcttcacccagctgcggagcctgggccacctggcc
ctgaacgacgtgtccctgcagatcctgcccagcgacatcgggaatttggcaaacctggtg
actctggagctgcgggagaacctgctaaaaacccttcctacttctctctcgttcctcgtc
aagttagagcagctggatcttggtggcaatgacctggaagtgctgccggacacgctggga
gcgctgcccaacctgcgggagctctggctagaccggaaccagctctcggccctgcccccg
gagctgggcaatctccgacgcttggtctgccttgacgtgtccgagaacaagctggaacag
ctgcctggagagatcagcgggctggcggcactgacggacctgctgctgagccagaacctg
ttggagtgcattcccgacggcatcggccagctgaagcagctctccatcctgaaggtggat
cagaatcggctgacggagatgagcgagtcgattggggactgtgagaacctctcggagctc
atcctgacagagaacatgctgacggccttgcccaagtccttggggaagctgaccaagttg
accaacttgaatgcggatcggaaccggctcaccgcgcttccggccgagattgggggctgc
gccagcctgaatgtgctgtccttgcgggacaaccgcttggtgcttctgccgcccgagctt
gccagtaccaccgagctgcatgtcctggacgtggcagggaacaggctgcagcacttgccc
tttgccctgaccaacctcaacctgaaggccttgtggttggcggagaaccagtcccagccc
atgctgaagttccagaccgaagatgacgaaaagacgggggagaaggttctcacctgctac
ctgcttccccagcagccctctcccagcctagagaatctccttcagaacagcgtggatgac
agctggatggacacgaacctgaaccgagtcagcgtgatccagttcctggatgagcccaaa
gcagatgatgatgatgaggctggagcggagaagaggggcctgcagcggcgagcgactccc
caccccagtgaactgaaggtcatgaagaaggtgattgaggtccggcgcaacgaggcatat
gccgcaaagcctgacatggacctggactctccgaactcagaggagaagaggctgagcgcc
acgtccaaccacagcgaggactcgcacgtctccaacagcactgcctctgctgacttcaag
ggggaggaagagaaagaggggggcaagggaggtgttttgcacagcaggcagggtccagaa
acgcgagagctaaaccagatggccgctcccaaggctgaggcggagcaggaggtggaggag
gaggccgaccaggaggatgacctggaaatggagtacaatgagcccacagtacactttgct
gaggacacgctgatgcggagcgatgatgaggatgacgatcggccgttcccagtggagaag
cagcggctgattcgcaaggacacgccacactacaagaagcacttcaagatcaccaagctc
cccaagcctgaagccgtagtggctctgctgcaggggctgaacagcgacggggtccccaaa
gaggaggaggaggagccgggtggctgcagtgacggtgcggagcccgaggagacggaggaa
gcctgggacgaggacgatgtcaagaacggagccacgtctacgcagccctcggtgaagggg
gtgtcgtttgatcaagccaataatctgctgattgagcctgctcgcattgaggaggaagag
ctaacgctgaccatcgtgcggcagacgggggggctgggcatcagcatcgcggggggcaag
ggctccaccccctacaagggcgacgacgagggcatcttcatctcccgcgtgtcagaggag
ggccctgcagcccgggctggagtgcgcgttggggacaagctcctggaggtgaacggcgtg
gccctgcactgcgctgagcaccacgtggcggtggaggcgctgcgcggctcgggcagctcg
gtctctatgacagtgctgcgggagcggatggtggagcctgagaatgccatcacggtgaca
ccgctgcgccccgaggacgactacagcccgcgggagcggcggggcggcctgcgcttcccg
gaccggcctgaaggcacgccgtctgcagagcgctgctccacctgcctcgtgcgcaacgag
aaagggctgggcttcagcatcgctggcggcaagggctccacaccctaccgggtcggggac
acggggatcttcatctcgcggatcgcagagggtggcgcagcccaccgggacgggaccctg
cgcgtgggagaccgtgtcatctcgatcaatggggtagacatgacagaagccaggcatgat
caggcagtagcgctgcttaccgcatcctcccccaccatcgtgctgctggtagagcgagag
ggtgccgagcagcccagcgagggagactcgcccatggtgccgcgggtgcgtgcccactcc
ccgcccccgccacccagccagggggacagcccccccgaggagacgcctccgctgccgagg
aaccacctgcccaagggcctggaggaccagtaccccatcgaggaggtccacctggtcaag
gcaggaggcccgctggggctcagcatcgtcgggggcagcgaccactccagtcacccgttc
gggatccatgaaccaggtgtctttatttcaaaggtcattccccgggggctggcgtctcgc
agtgggctgcgtgttggggacaggatcctggaggtgaatggcatcgacctgcggcacgcg
actcaccaggaggccgtgaatgctctgctctccaacagccaggagctgaccatgctagtg
aggcgagaccctccgccccccggcatgcaggaaatctgcattgagaaggcacctggggag
aagctgggcatcagcatacgggggggagcaaaaggccatgccgggaaccccttcgatcca
actgacgagggcatcttcatttccaaggtgagctcctcgggggcggctgcccgggacggc
cggctgaaggtggggatgcggatcctggaggtaaaccaccagagcctgctgggcatgacg
cacacagaggccgtgcagatcctacgcagcgtgggcgacacactcctcgtcctggtgtgc
gacggctttgaccccaaagccgcggctgccattgagatgtctccgggaatcattgccaac
ccctttgctgccgggatcgggcgcaagaacagcttagagagcatctcctccattgaccgt
gacctgagccccgaggagctggaaatcctgcagaaggagatggagatggtgagggaggcg
actcagtgggagagagaagaaatggagaaagtggagaggatgcgcagggagcgggaggca
gccacgcaacagctggaggaggaggctgagaacatcactggcgagcccctgagactggac
tatcggacccttgcggctttgcccagcagtggcttacagagagtcccccgtgctgctcct
gcaggcgagtccgggtccgggagctccaggcgagaggccccctactcccccagcagccag
caggcttccatcagcttcacgccattgccagatgacagcaaagcaaccaagccgggcgtc
attcagcctctctctcgggtgcgacagagcactgcccagcccagttcggggggcagggac
agccccaaccccttccagctgcctgagctgtgcgccggggtccccaacactccgcgggcg
ccctctcccccctctccggacgaggtccctgtcaatgtcaagcaggcatacaagaccttt
gcagcagtgcccctatcccaccctctcctggagtcacaggagctgcatggtcaaacgagc
acagagaagttcaaagccacccacgaggtgccatcacctggggagctgcacagccccgag
cagcggtccttccgcgagaggcagaagtactttgagattgaggtgaagcagcagcaggtg
gagaagcccccgaagcgcgtctccctggtgggggaagacgacctgaagaagatgaaagag
gaggaagcccgcaaactgcagcagaaacgggccgtgctgctggaggaggaggaggaggaa
gaggacgtggggaagctgacgcccgatctgagcacacagtccactgtcatcatcgagggt
gtggagtacaagatcgagcggctgaacggcaggagcccacagtcccccacagctcggttt
cccgaggccgctgagaacagcagctcccagaggaactcgctggaggagggtttcaggcct
gagcagaggcccaactccatgtctgggcttagccctgtgtacccgggagctgggggtgag
ccgggagcacccgtgcgcacagccaaggccgagcggcggcaccaggagcggctgcggatg
cagagcccggagctcctgagcagccaagacaaggagctgtctcccgccgagcgccgggcg
ctggaggcagagaaacgagccatgtggagggcggcccgctcctccgctcttgaagacagt
attaaacagtacgagcaggatctggccaggaagctgtaccagtcccggcagcgggtgcct
gctcctggggccaggccggctcaggtgctgagcccggtgcagagtcacgccacaaggacc
ctggggccaggaagccaatccagcatgaagtccctggagcaggatgccctcaaagcgcag
atggtgattgccaagtccaaggaagggaagaagcgcagcaccctggagcagctggcagag
tcgccttcccccgcccccaccccatcgccaacacctctggaagattgcagccccaggacc
gtcacctcgccaggacgcctgtccatgtccgaaaagaagtttgactaccgggaatttgcc
gctattccttcttccaaacccgtttacgaaatccagtcgcctgatgcagccgatggcctc
agatacgtggatgacgtgaacagctcggtcccccaggagcaggacgggcagccagaggaa
gaggagctgttagtaacgcgtgacccgtcggcgcccaacgcctccgcactcgaagatgtg
gctctgtacagcagcaagcgcaaactgcggcatggccggcgcagcctggaggctgccgtc
cccacatag
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integrated database retrieval system
