Alligator mississippiensis (American alligator): 102559501
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Entry
102559501 CDS
T03087
Symbol
VPS50, CCDC132
Name
(RefSeq) VPS50, EARP/GARPII complex subunit
KO
K23288
syndetin
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102559501 (VPS50)
Membrane trafficking [BR:
amj04131
]
Protein recycling
Others
EARP complex
102559501 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
102559501
NCBI-ProteinID:
XP_014458704
UniProt:
A0A151MQ48
LinkDB
All DBs
Position
Un
AA seq
967 aa
AA seq
DB search
MQKIKSLMTRQGLRSPQENVHDLSPIENFRIPSKEEFRELREQPTDPQAQQEIINSIEEV
YFSNDSFDIVKYELEKLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYAKELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDISHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHETHDRDGGPALSSV
SDGSNAIGAEEANFDRSYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
IISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLEELRMFLENETWELCPVKAS
FSILQLHEFKFMEQSRSPSMSPSKQPASAISTTVTLFEQYCNGGNPFEIQANNKDEETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDVPVKSISRETLKSRKRSDY
SLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DTFELTGLGLSSSRLRTTLNRIQESLIDLEVSTDSTVTLTAVEERKEKVPSLHLSHLVVL
TSGNTLYGLAERVVATESLVFLAEQFEFLQPHLDTVMPAAKKPFLQQFYSQTVSTASELR
KPIYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDSLLKEFEQFNRRLNEVSKKV
RIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPI
PDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctcatgacccgccagggtctcagaagtcctcaggagaatgtt
catgacctcagccctattgagaattttcggattcctagcaaggaggaattcagagagcta
cgggaacaaccaactgatcctcaagcacagcaagaaataattaatagcattgaagaagtg
tatttttccaatgattcatttgatattgttaagtatgaattggagaagcttcctcctgtc
cttagtcttcaggaattggaagaatacagagataaattaaagcaacagcaagctgctgta
tctaaaaaggttgcagacttgattcttgaaaagcagcctgcatatgctaaggaacttgaa
cgcgttacatctttacagactggccttcagttagctgctgtcatttgcacgaatggaaga
aggcacctgaacattgcaaaggaaggctttacacaagctagcttggggcttcttgcaaat
caaagaaaacggcaattgcttattggattactaaaatctctgagaacaataaaaacactg
caaagaactgatgtacgtttaagtgaaatgttggaggaggaggattatccaggagctatc
caactatgcttggaatgtcagaaagcagccagcactttcaaacactacagttgtataagt
gaattgaattctaaactgcaagacactttggagcaaatagaggaacaattagatgtggct
ctgtccaaaatatgcaagaactttgatatcagtcattataccaaggtgcagcaagcttat
agattacttggaaagacacagacagcaatggaccaactacatatgcacttcactcaagcc
attcacaatactgtttttcaagtagttcttgggtatgtggaactgtgtgcaggaaacaca
gacacaaaatttcagaagctacagtacaaggacctctgcactcatattacatctgacagc
tacattccatgtcttgctgatctctgcaaagcactttgggaagttatgcttagctattat
cgaaccatgcaatggcatgagacacatgatcgagatggaggacctgctttatcttcagtt
tcagatggcagcaatgcaattggagctgaggaggccaattttgaccgcagttatgtaaaa
aagaaattagaacatggactttcaagaatatggcaggatgttcagctgaaagtgaagaca
tatctgctaggaacagacctgtctaacttcaaatatgatgatttcatttttgtactagat
attatcagcaggctgatgcaagttggagaagaattttgtggaagtaagtcagaagttttg
caagaatctattagaaaacaaagcgttaactacttcaaaaattatcacagaacccgtctt
gaagaactccgaatgttcttggagaacgagacctgggagctttgtcctgttaaggcaagc
tttagtattttacagcttcatgagtttaaattcatggagcagtcacgttcaccatccatg
tcacctagtaagcagcctgcttcagcaatttctacaacagtcactttgtttgagcagtat
tgtaatggaggaaacccatttgaaattcaagccaacaataaagatgaggagacagaagat
gtacttgcttctaatgggtatgaatctgatgaacaggaaaagagtgcatatcaggagtat
gacagtgacagtgatgttccagaagagctgaaaagagattatgtggatgaacagacagga
gatgtccccgtaaaaagcatttctcgagagaccctgaaaagcaggaagagatcagattat
agcctcaacaaggtgaatgcccccattctgacaaacactacactgaatgtaataaggctt
gttgggaaatacatgcagatgatgaacattctgaaaccaattgcatttgatgtgatccac
ttcatgtcccaactgtttgattactatctatatgcagtatatacgttttttggccgaaat
gacacgtttgaattaacaggactgggtctcagcagtagcagactgcgaaccacactgaac
aggatccaagagagcctgattgatctggaggtctctactgatagtactgttaccctcaca
gctgtggaagagagaaaggaaaaagtgccaagcctgcatcttagtcatctggtagttttg
acatctggaaatacactgtatggtttggcagagagagtggtagccacagaatcattggta
tttttggctgagcagtttgagttccttcagccacatcttgatactgtgatgcctgctgcc
aagaaaccctttctccagcagttctattctcagactgtgtcaactgccagtgaactacgc
aagccaatttattggattgttgctgctaaagctattgactatgaacagatgctgctcctc
atggctaatgtgaaatgggacgtgaaggaaatcatgtcacagcacaatatatatgtagat
tccctattaaaggaatttgaacagtttaacaggaggttgaatgaggtgtctaaaaaagtc
cgtattccattgccagtatcaaatattctttgggagcactgcataagattagccaacaga
actcttgtggaaggttatgccaatgtcaaaaagtgcagcaatgagggacgtgccttgatg
caactggattttcagcagttcttaatgaaactggaaaagctcacagacattaggccaatt
cctgataaggaatttgtggagacctacattaaagcttactatcttactgaaaatgacatg
gagcgctggattaaggaacatagggaatattctaccaagcaactgaccaatctggtgaac
gtctgtctgggatcccacatcaacaaaaaagcaagacagaaactgctggctgctattgat
gacatagacagacctaaaagataa
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