Alligator mississippiensis (American alligator): 102559593
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Entry
102559593 CDS
T03087
Symbol
TARBP1
Name
(RefSeq) TAR (HIV-1) RNA binding protein 1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amj03016
]
102559593 (TARBP1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102559593 (TARBP1)
Enzymes [BR:
amj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
102559593 (TARBP1)
Transfer RNA biogenesis [BR:
amj03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
102559593 (TARBP1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102559593 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
102559593
NCBI-ProteinID:
XP_019335261
LinkDB
All DBs
Position
Un
AA seq
1450 aa
AA seq
DB search
MEHVLADALLARCRDPCELLRELGAGAGGSAETLEALGFLLGRLQPPSRGEGDGEALARA
ATEPAAGPRTLLALCALADALFPAAGPGQAVEPRLSAGFWRALQGGLAGSDGLGRKRARY
LLRRAVEASERRRQHCPGPPAAADEPSLFWWSAEENEKLVQFWENFILIMETLEGNQIHV
IKPVLPKLNRLYELSVSGKKGCWLFHPSWHMCIYKRMFESENKTITKEGVIHFLDLHEAK
CIPDSPGFSEFIIGPLMDALSESSLYSRSPGQLIGACPPIGIKFQKFLVVYLTLLPEEEK
SSFLLKFIQKMTSRHWCAVPILFLSMALACIPACKALGTEGLHALRDVLQCTMITHQILL
RGAAQCYLLQTAMNLVDVEKVSLPEVSSYLASLRPEESLRRGTILWVELCSWLCTNDGHF
RKSIKCDLEHQERSSLSTYVLTLVEDYLKTPPSGRESCFMPDWFEAKLVATMILLAADVE
EMKNKHSEKINTKWIELKAFLYPLLDVLLKLGTNVYIPTLKADKSLQLLLKLLQTCSLKC
SNPQDDGVLTFLWKCVETSVDSVLDFVLRRLTTGDLNSVSDLDRCNLYLALVSELVNLSS
NIGWKKGPSIWNFTSSLTNASIHSLQEASSEQEPKLEEQIQKVVSMASLTVVCEIIDQKP
ELQLESLQPVETLKRFISSAQLNQVLKKPSSIEEKSSLFEESTSCQGWGKTVACYIHDQW
VCLHFLLKKYQNHIPQSEDETLELSLPAVQRPRRTFQSALEALTVLPSEQVLPVFHCMKV
LIPKLLVSSETLCIEAFDLGWKIISSLSNTQLIFWSNLKAFVQVVFDTEVLAVAASSKGQ
AYAKIREMISRLVEMSTTRTGVFNTVLSYCCQSWVLSTSDDTHISENPFLNAGEYSELLM
EACIFGTVFRRDQRLIQDVHAFVENLGDKCAANVVTESTNRDEHYVRICVIKFLCLLDES
NNLHKMFVEDIVTKLLDKDELVSKTRTRYYANSLQHRVKNRLWQTLLVLLPKLDQNFLTE
TLDKILQAGFENNQASVKYLIEWIIILILHKYPQFLSKFWDCFCYDEEKLKTSICTFLSV
LSHFDIILQNTLEKKPVLKKALIVVLQWCFNHNFSVRLYALIALKKIWGMCKTLHVEEFE
VLTPVIESSLHQVENMHGTGNAKRNWQRIQEHFFFATFHPLKDYSLETIFYTLPRLSELV
EDEWISLCKFTRFTSIPLPSTYQWYHSRAELLDLKPSDWSQQDKGSNSVEMDNQTEWTDV
QKKIIPWKNSIPDLDLELVFQDRAAKLGKSNSRLIVVASLIDKPTNLGGLCRTSEIFGAS
ALVVGSLHYIHDKQFQQLSVSAEQWLPLLEVKPSQLVEYLQQKKMEGYTIIGVEQTAKSS
DLTEYCFPEKSLLLLGNEHEGIPVNLIQLLDVCVEIPQRGIIRSLNVHVSGALLIWEYTR
QQMIKQKQLK
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgctagcggacgcgctgctcgcgcggtgccgggacccgtgcgagctgctg
cgggagctgggggccggcgcgggcgggagcgcggagactctggaggcgctgggcttcctg
ctggggcgcctccaaccgccgtcaaggggggagggggacggggaggcgctggcgcgggcg
gcgaccgagccggcggccgggccgcggacgctgctggcgttatgcgcgttggccgacgcg
ctcttccccgccgcagggcccgggcaggcagtggagccgcgcctcagcgcggggttctgg
cgggcgctgcagggtggcctggccggcagcgacgggctgggtcgtaagcgggcccgctac
ctcctgcgccgcgccgtagaagcgtccgagcggcgtcgccagcactgccccgggcccccc
gctgcggcggacgaaccaagtcttttctggtggtctgctgaagagaatgaaaaacttgtg
caattttgggaaaattttattttaataatggaaaccttagaaggaaatcagatccatgtt
ataaagccagtcttgccaaagttaaaccgtttatatgaattgtcagtatcgggaaaaaaa
ggctgttggttgtttcacccttcatggcatatgtgtatttataaaagaatgtttgagagt
gaaaacaaaacaataacaaaggaaggagtcattcactttttggatcttcatgaggcaaag
tgcattccagattcaccagggttttcagagtttattatcgggccattaatggatgcactt
tcagaaagctctctctatagcagatcaccagggcaattgataggagcctgtcctcccata
ggaataaaatttcagaagtttttggttgtgtacctcacactccttccagaagaagaaaaa
agcagttttctgttaaaatttattcagaagatgacaagcagacattggtgtgctgttccc
attttgttcctatctatggcactggcatgtatcccagcatgtaaagcattgggaacggaa
ggacttcatgcactaagagatgtcctgcagtgtactatgattacacatcaaattctctta
cggggagctgctcagtgctatcttcttcaaacagctatgaatttagtagatgtggagaaa
gtgtcacttccagaagtttcaagttaccttgcatctcttagaccagaggaatccttaagg
aggggaacgatactgtgggtggagctttgcagttggctgtgcactaatgacggccacttc
agaaagtccataaaatgtgatcttgagcatcaagagagatcatcattaagtacatatgta
cttactcttgttgaagattacctcaagacaccaccatctggaagggaaagttgctttatg
cctgactggtttgaagctaagcttgttgctacaatgattctgctggctgcagatgtagag
gaaatgaagaataaacacagtgaaaaaatcaacacaaaatggattgaattgaaggctttc
ttgtaccctcttctggatgttttgctgaaacttggcactaatgtttatataccaacactg
aaagctgataaaagcctacaattgctgttgaagttattacagacctgttcgttaaaatgt
tctaatccacaagatgatggggtattaacttttctctggaagtgtgttgagacttctgta
gacagtgttttggattttgttctccgaaggcttactacaggtgatttaaactctgtttca
gatttggatcgttgtaatttatacttggctttagtatcagagctggtaaatttatcatcg
aatattggttggaaaaagggaccatccatctggaatttcacctcttctttgacaaatgcc
tctattcatagtctgcaggaggcaagcagtgaacaggaaccaaaacttgaagaacagatt
cagaaggtagttagtatggcatcactaactgtggtgtgtgagattattgatcagaaacct
gaactgcaacttgaatctctgcaacctgttgagaccctaaaaagatttatttcttctgct
caacttaatcaagtattaaagaagccatcttctattgaagaaaaaagtagtttatttgaa
gaatcaacttcttgtcaaggatgggggaaaacagttgcctgctacatacatgatcagtgg
gtttgccttcattttcttttaaaaaagtatcagaaccatataccacaatcagaagatgag
actttggaattatctttgcctgcagttcagagaccaagaagaactttccagtctgctttg
gaagctctaactgttcttccttctgagcaggttttacctgtgtttcattgcatgaaagta
cttattcccaagcttctggtttcatctgagactctctgcattgaggcatttgatctgggt
tggaaaattatatcctctctgagcaacacacagctaatattttggtctaatttaaaagcc
tttgttcaagttgtttttgatactgaggttcttgctgttgcagcaagtagcaaaggtcaa
gcatatgcaaaaataagagagatgataagcagactagttgaaatgtccactacaaggacg
ggagtctttaatacagtacttagctattgctgtcagtcttgggtactttctacttctgat
gacacacacatttcagagaatcccttcttgaatgctggagaatacagtgaacttcttatg
gaggcttgtatctttggaactgtattccggcgagatcaaagacttattcaggatgtacat
gcctttgtagaaaatcttggagataaatgtgcagcaaatgttgtcacagaaagtacaaac
cgagatgagcattatgtgcgaatttgtgtcatcaaattcctgtgcttgttggatgaatca
aataacttgcacaagatgtttgtagaagacattgtcaccaaactccttgataaagatgaa
ctggtatccaaaactaggacacgttattatgcaaactctttacagcacagagttaaaaac
cggttgtggcagacactgttggttcttttaccaaagctagatcagaattttttgactgag
actcttgacaagattcttcaagctggatttgagaacaatcaagcatctgtaaaatacttg
atagaatggattatcatcttgattctacacaaataccctcagttcctttcaaaattctgg
gattgtttttgctatgatgaagaaaagcttaaaactagcatctgtacatttttatcagtg
ttgtcgcacttcgatattattcttcaaaataccttggagaagaaaccagttctgaaaaag
gcccttattgttgttctacagtggtgtttcaaccacaatttcagtgttcggctttatgca
ttaatagctcttaagaagatctggggcatgtgcaaaacactgcatgtagaagaatttgag
gtattaacaccagtaattgaatctagtctccatcaagtggaaaacatgcatggcacaggg
aatgctaaaaggaattggcaacgaatccaagaacatttcttttttgcaacatttcatcca
cttaaggattatagtctagagacgatattttacacccttccacgcctttcagaacttgtt
gaagatgaatggatctcactttgtaaatttaccagattcactagcattcctttgccatca
acatatcagtggtatcattctcgagctgaacttcttgacctaaagccaagtgactggtct
cagcaagacaagggttcaaattcagttgaaatggataaccaaacagaatggactgatgtt
cagaaaaagattatcccttggaaaaatagcattcctgatttagacctggaactggtattt
caggaccgtgctgctaaacttggtaaatcaaacagtagactgattgtagtggcttcactt
attgataaacccacaaatttaggaggcttgtgtcgtacaagtgaaatatttggggcatct
gctctagttgttggcagccttcattatatacatgataaacagtttcagcagctcagtgtt
tctgcggaacagtggcttccccttcttgaggtgaaaccatctcagcttgtagagtattta
cagcagaaaaagatggaaggctacactatcataggggtggagcagacagccaaaagttct
gacctgacagaatattgctttccagagaaatccttgttattgctgggaaatgaacatgaa
ggaatcccagtaaacctgattcagcttctggatgtgtgtgtggaaattcctcaacggggt
atcattcgctcactcaatgttcatgtaagtggagctctgctgatttgggaatatacaaga
caacaaatgatcaagcagaaacaactgaaatag
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integrated database retrieval system
