Alligator mississippiensis (American alligator): 102559838
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Entry
102559838 CDS
T03087
Symbol
COL4A4
Name
(RefSeq) collagen type IV alpha 4 chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04382
Cornified envelope formation
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102559838 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102559838 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102559838 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102559838 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102559838 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102559838 (COL4A4)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102559838 (COL4A4)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102559838 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102559838
NCBI-ProteinID:
XP_019347391
UniProt:
A0A151NAU7
LinkDB
All DBs
Position
Un
AA seq
1681 aa
AA seq
DB search
MALTKYSFKWIKQIIAPWWLILIFSVKQIYGGTYAYIGPCEGRDCSVCQCFPEKGSRGRP
GELGSQGPIGPLGLTGPVGLPGEKGQRGENGLLGPAGEKGDKGPTGVPGFPGLDGLPGLL
GVGGHRGKPGLDGSNGSRGDPGFPGGKGYIGPRGPPGYPGQKGEKGMSVYVSHFRRGDPG
DRGDPGAAGVPGSRGGRGAVGPRGYHGQPGLQGAPGHPGLPGEQGNPGIGVDGQKGELGD
VGSPGPPGQPLLVGPPGAMLMKGEKGQKGMTGVIGPNGLRGPKGAPRIGEKGEKGIPGVP
GIRGFPGSPGSQGSVGRKGRTGFPGAPGQAGYSGMKGDRGEQGPPGLPVSYGTPLLPVKG
PRGDPGFPGPDGEVGSDGPAGPSGPPGRPGEDGASLPGLPGVTGAQGHPGFQGDPGLSGR
AESNPGRPGAPGTPGLPGAPGRRGVSGTPGRVCTSNGPPGELGAKGQMGFPGRNGEKGEK
GSEGRCSCGPGPAGPPGVPGASGGRGQKGEMGYPGRGGQKGDSGLPGTRGSTGLLGLHGT
PGMRGEKGEKGDPARIRTKGKKGEKGFPGIPGFPGQNGSAGRDGERGMPGEKGLPGDYRP
PLPGDKGFPGTPGHPGMRGPPGLPGLGIPGPKGNKGIFGDPGSPAVIGPPGLKGSKGDAH
CSVPPVPGNPGLPGFKGVQGPKGERGPPGLPGPDGFDGQKGQQGKTGIGIPGPGGFQGNA
GEPGGEGEKGFTSDGSTGSPGTPGRDGQKGAPGDTMYGPPGIPGSRGSAGSPGMQGMRGD
PGSRGPQGQPGTPGLPGAKGRRGKKGDMGALGRRGLPGEQCDTNLPGPLGLPGPKGWPGP
PGFPGSKGHRGDMGSPGSVGKNGIPGPNGIPGHSGPPGSQGSSGLPGDNGLPGLPGLKGR
KGIQGLRGFPGSPGKQGEMGIPGEKGEQGEMGPPGLPGDPGDGGQKGEKGPQGDPGYIII
HHEKGQKGDPGPPGEQGFPGERGDKGSPGIRGLPGLPGTDGLPGPPGESGICGQIGLPGP
RGYPGPPGTRGIPGFSGAPGDQGEQGLPGTPGSPGSDGRKGCKGNRGDPSSQPGLPGPKG
PVGEPGLPGPHGFPGEPGFPGAQGQSGRQGPKGIPGYLGVPGFPGAVGVPGLPGVPGDQG
LIGLPGPAGLPGFSGSKGRKGMSGLPGLDGLNGLQGQKGSPGVPGHSNTGHPGYQGEAGP
KGDKGESGQPGISLPGPPGETGLLGLPGRAGGPGPKGHVGRAPEIAPRGLPGDRGPPGSG
GNRGPPGSAGPPGEIIFVKGDPGNFGIPGARGFPGQPGQQGAKGFPGKQGREGLHGLRGN
PGPQGPPGQVGQPGDQGIEGHPGPPGPKGFRGDPGEPGKVEDNLCPKFPGPPGRIGSKGH
EGPKGLQGPRGYTGFPGRKGEEGSPGLTGQDGTPGLPGPPGDQGDVGEQGYPGPQGPHGQ
TGIPGPPGPEVRAASGFLLVLHSQSDREPFCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPLFSTMPFTYCNINQVCYYASRNDKSYWLSSAAPLPMMPLSEDEIKPYISRCAVC
EAPAQAIALHSQDQFIPPCPQNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQQGTCQFFANEYSFWLTTVRPELQFTSAPLSQTLKEGQEQRKKISRCQVCLKY
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaacaaagtattcttttaagtggattaaacagattatagctccctggtggctg
atacttattttctcagtgaaacagatttatgggggcacatatgcatacattggtccatgt
gaaggccgtgattgttcagtttgccagtgctttcctgaaaaaggatcaagaggtcgacct
ggtgaattagggtctcagggtccaattgggcctttggggcttacaggaccagttggtttg
ccaggagaaaagggacagagaggtgagaatgggctgcttgggccagctggagaaaaaggt
gataagggccccacaggagtcccaggctttcctggtttagatggcctgcctgggttactt
ggagttggaggacataggggcaaacctggcttggatggttccaatggttcaagaggagat
ccaggatttccaggggggaaaggatatattggacctagaggcccacctggctatcctgga
caaaaaggagaaaaaggaatgtctgtttatgtttcacatttcaggaggggtgatccagga
gacagaggtgatccaggagccgctggtgtacctggatctaggggtggaaggggagcagtg
ggcccacgtggatatcatggccagccaggcttgcagggcgctccaggccaccctggtttg
ccaggtgaacagggaaatccaggcattggagttgatggacagaaaggggaattgggtgat
gttggatctcctggacctccaggacagccactgttagttggccctccaggtgccatgctg
atgaaaggagaaaagggtcaaaagggaatgactggagtgataggacctaatggattgcgg
ggaccaaaaggtgcacctcgaattggggaaaaaggagagaaaggaattcctggagtccct
ggaataaggggttttcctggttctcctggatctcaaggttctgtaggaagaaagggaaga
acaggatttcctggtgctcctggccaggctggctattcaggcatgaagggagatcgtgga
gaacaagggccaccaggcctgcctgtttcttatggaacaccacttttgcctgtgaaaggt
cctcgaggagacccgggatttccaggtcctgatggagaagttgggtcagatggaccagct
ggtccttccggcccaccaggaagaccaggtgaagatggagcaagccttcctggcctacca
ggagtgactggtgcacaaggccatccaggttttcaaggtgaccctggtctctctggaaga
gctgaatcaaatccaggaagaccaggggctccaggcacaccagggttaccaggagcacca
ggaagacgtggtgtgtctggaacacctggtagagtttgtactagcaatgggccccctgga
gaattgggagcaaaaggccaaatgggatttccaggtcgaaacggtgaaaaaggagaaaaa
gggagtgaaggtcgctgctcatgtggtcctggcccagctggaccacctggagtaccagga
gcatctggtggtcggggacagaaaggagagatgggatatcctggaaggggtggacagaag
ggtgattcaggcttgcctggtacacggggatcaacaggactcctgggactccatggtacc
cctggaatgcgtggggagaaaggagaaaagggtgacccagctagaatcagaaccaaagga
aaaaaaggagaaaagggttttcctgggattccaggatttccaggccaaaatggtagtgct
ggaagagatggagagcggggaatgcctggagaaaaaggacttccgggtgattacagacca
ccactgccaggtgataaaggatttcccggaaccccaggacatcctggtatgagaggaccc
ccaggactaccaggcttgggaattcctggcccaaagggaaacaaaggcatctttggggac
ccaggcagccctgctgtaattgggccacctggtctaaagggttcaaaaggtgatgcacac
tgctctgttccaccagttcctggaaatccagggctcccaggttttaaaggtgttcaagga
ccaaagggagaaagaggaccacctggtctccctgggccagatggctttgatggacaaaaa
ggacaacaaggcaaaacaggcataggaattcctggaccaggaggtttccagggcaatgct
ggggagccggggggtgaaggtgaaaaaggctttacttcagatggaagcacaggctcacct
ggcactcctggaagagatggtcagaaaggggctccaggtgataccatgtatggtccccca
ggaattccaggcagtagagggtcagctggatcacctggcatgcaaggcatgagaggtgat
ccaggcagtcgtggaccacaaggacagcctggtacaccaggacttccaggtgctaaaggt
cgcagaggcaaaaaaggagatatgggagctctaggacggcgaggcctacccggtgagcaa
tgtgacacaaacttaccagggccactgggactgccaggtccaaagggatggccaggccct
ccaggctttccaggctctaaaggccaccgaggagacatgggttcaccgggatcagttgga
aaaaatggtattccaggacctaatggcatacctgggcactctggtcctccagggtcacaa
ggatcatcagggctccctggggataatggactgcctggtctcccaggactgaaaggaaga
aaaggaattcaagggctccgaggtttcccaggatccccaggaaaacaaggggagatggga
atcccaggtgaaaaaggtgaacaaggagaaatgggtccacctgggctccctggagaccct
ggcgatggaggtcaaaaaggtgaaaaagggccacaaggagatcctggttacatcatcata
caccatgagaaaggacaaaagggggatccaggtcctcctggtgagcagggatttccagga
gaaagaggggacaaaggcagccctggaatcagagggctcccaggattgccaggcacagat
ggactccctggacccccaggtgaatctggcatttgtggacagataggtttaccaggccca
cgaggctacccagggccaccaggcaccagaggaattcctggtttctcaggagccccgggt
gatcagggtgagcagggtttaccaggaactcctggaagtccaggatcagatggcagaaaa
ggatgcaaagggaacagaggtgacccatccagtcaacctggtctaccgggtccaaaaggg
cctgtaggagagcctggcttaccaggtccccatggattcccaggtgagccaggttttcct
ggtgcccaagggcaaagtggaagacaaggacctaaagggattcctggatacctaggagta
ccaggctttccaggtgctgtgggtgttccaggattgccaggtgttccaggtgaccaaggc
ctcattggactcccaggacctgcaggattgccaggattctctggttccaaaggcaggaaa
ggtatgtctggattgcctggattagatggcttgaacggactgcaagggcaaaagggttca
ccaggagttccaggtcacagcaatacagggcatccaggataccaaggagaagctggacca
aaaggagacaaaggtgaatctggacagccaggaatttctcttccaggtcctcctggagaa
acaggcctgctaggactgccaggtagagcaggaggtcctgggcctaaaggacatgttgga
agggctccagaaattgctccacgtggtcttccaggggatcgagggccacctggctccggc
ggtaacagaggtccgcctggcagtgctggccctcctggagagatcatctttgtgaaagga
gatccaggcaactttggtattccaggggcaagagggtttcctggccaaccaggccaacaa
ggagccaaaggctttccaggaaaacaaggaagagaaggcctacatggtctcagaggaaac
cctggtccccagggtcctcctgggcaagttgggcagccaggagaccagggcattgaaggt
catcctgggcctccaggtcccaaaggcttcagaggtgaccctggtgaaccaggaaaagtt
gaagacaacttatgccctaaatttccagggcctcctggcagaattgggtcaaaaggacat
gaagggcctaaaggattacaagggccaagaggctacactggattcccagggagaaaaggg
gaagaagggtcacctggcttgacaggtcaagatggtaccccaggtctgcctggtcctcca
ggtgaccaaggtgatgtaggagaacaaggataccctggaccacaaggtccacatggccaa
actgggatcccaggaccaccagggcctgaagttagagctgcaagtggattcctgcttgtc
cttcacagtcagtcagacagagagccattttgcccccagggaatgccaaaattatggact
ggctatagtctgctatatctggaaggacaggaaaaagctcataatcaagatcttggtctg
gcaggatcttgccttcctttatttagtaccatgccctttacctactgcaacatcaaccaa
gtttgttactacgctagtcgaaatgataaatcttactggctctcaagtgctgctcctcta
ccaatgatgccactctctgaagatgaaataaaaccatatattagcagatgtgctgtatgt
gaggccccagctcaagctatagcacttcatagccaagatcagttcattcctccctgccca
cagaactggagaagtctttggataggatattcctttctaatgcacactggatctggagac
cagggaggtggacagtctcttatgtcacctgggagttgccttgaagacttcagatcagca
ccattcattgaatgccagggtcagcagggaacatgtcagttttttgctaatgagtacagt
ttctggttaacaactgtgaggccagaattgcaattcacatctgctcctctgtcacaaact
ctcaaagaagggcaggaacagcggaaaaaaattagtagatgtcaggtctgcttgaagtat
ggctaa
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