Alligator mississippiensis (American alligator): 102559847
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Entry
102559847 CDS
T03087
Symbol
HPS5
Name
(RefSeq) HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102559847 (HPS5)
Membrane trafficking [BR:
amj04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
102559847 (HPS5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_VPS8
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
102559847
NCBI-ProteinID:
XP_006263549
LinkDB
All DBs
Position
Un
AA seq
1145 aa
AA seq
DB search
MTSVPMIPESCSHVLAEFECLDPLLSALRLDSSRLKCTCIAASRKWLALGSSGGGLNLIQ
KEGWKQRLFLTHKEGAISQVSCCLHDEDYVAVATSQGLVVVWELNQERRGKPERIYVSSE
HKGRKVTALCWDTAALRVFVGDHVGKVSAIKINTSKQGKAAAAFVMFPVQIVTTVDSRVV
QLDYMDGRLLISSLTRTYLCDTEREKFWKVGNKERDGEYGACFFPVGKGGGSQLPLIYCA
RPGSRMWEVNFEGEVLSTHQFKQLLSSPPLPLITLRSDPQYNASSCSPQSLSFPKLLYLT
DHCVMTWTEKGIYIFIPQSVQVLLWSEIKDIQDITVFKNELFCLHTYGKVSHLSLLLVER
CVERLLRRGFWSLAAKVCCLFQNSIVSCRARKALPLDKLEHLKSQLDLSTQPDVISQLEE
LISKLEPLGSACSSRRSSISSHESFSVLDSGIYRVISRRGSQSDDDSCSIHSQALSEDER
LKEFSAHQEEEQVDLDNVSHASVTVETDRTETFLPFSIPLSFRSPSPLVSLQAVKESVSS
FVRKTTEKIGTFHVCPDVKVRQEVKDEEQPHEVTASIAAYPQEEDKNIVEQSQPPEVDQL
RDLKVATVEAIVKLQDPLILLEPQCLKEVLQEWFLYLEETFAFREPSISDDSSSITDDGL
SIKQDKTMFAEEQSEGLEENIELPQNNEVHVDKGESGALEYNMEKNEASEAHAGKTVCEN
DATAKETLDHSFRVYPPCSIPQEVHKDLVELTTLCFELNVFACESKPTKESSEQRLPLTT
LWVLACRFIQSYFFLLDLKRLKDFIIINYANSPNIWETYIEGLKELTHSSPVTSAMENGD
MLKTLKLLNDLRPWDSPLLLAHVQRLYEKFGETALRPLIKFYPSILPSDIMQLCRHHPAH
FLAYLDSLVKSKPEDKRASLLRSLLQPESLRLDWLEWAVSYDAPQKANTVDAEGNPSPRS
HLFTWGYSQLILLLIKLPADFVTKEKMADICKSHGFWPGYLSLCLEMDRRKEAFTNIVHL
DDMNLLDEEHDSLPETMDEWKFLLHLAQSHSTGPHHAGAQNGNTVSNGSSDWSNCITVEN
IALLLAKVIGPDNALPLLQECGLTVELSDRFTRVCEILRIAEKRQRALIQSMLERCDRFL
WSQQT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgtgccaatgataccagaatcctgcagtcatgtattggcagaatttgagtgt
ttggatcctttgctttctgcactcaggttggattctagtcgtctgaagtgcacatgcata
gctgcatctcggaaatggctggcactgggcagttcaggtggtggcttgaaccttatccag
aaagaaggctggaaacagcgactctttctcactcataaggagggtgccatttcccaggtt
tcctgttgtttacatgatgaagattatgttgctgtagccaccagtcaaggccttgttgta
gtctgggaattgaatcaagaacgtcgtgggaagccggaacggatttatgtttcctctgag
cataaaggcagaaaggtcacagctctctgttgggatacagctgcccttcgagtttttgtg
ggagatcatgtggggaaagtatctgccatcaagattaatacatccaaacaaggaaaggca
gctgctgcttttgtgatgtttccagttcaaattgtaaccactgtagactcccgggtagtt
cagcttgattatatggatggaagattgctcatctcttcactcactcgcacctacttatgt
gatacagagagagaaaagttctggaaagttggtaacaaagaaagagatggagaatatgga
gcctgctttttcccagttggaaagggtggagggagccagctgccattaatatattgcgca
cgtccagggtcaaggatgtgggaggtgaactttgaaggagaggtgctaagcacgcatcaa
ttcaaacagctgttatcatcacctcctctccctctcattactctaaggtcggatcctcag
tataatgcttcttcctgttccccccagtctttgtctttcccaaagctgttatatttgact
gaccattgtgtcatgacctggacagaaaaaggcatttatatcttcattccacagagtgtt
caagttttactttggagtgaaataaaagatattcaggatattacagtattcaaaaatgag
ttattttgtctgcatacgtatgggaaagtctcgcacctctcccttctgctagtggagcgc
tgtgtagaacgtctgctgcgacgaggcttctggagccttgctgccaaagtctgctgcctc
ttccagaattccattgtttcctgcagagcaagaaaagctttgcctctagataagttagaa
cacttgaaatcacagctggacctctcaacacaaccagatgtcattagtcaactggaagaa
ttgatttcaaagttggaacctctaggttctgcatgcagcagtaggaggagcagtatctca
tcacatgaaagtttcagtgttttagactctggtatttatcgtgttattagccgaagaggc
agtcagtcagatgacgactcttgttctatacacagtcaagccctatcagaagatgagaga
cttaaagaattttctgcacatcaggaagaagagcaagtggaccttgacaatgtgtctcat
gcttctgtgacggttgagactgatcggactgagacttttctcccattcagtattcctttg
tcatttcgttccccatctcctctcgtctctctccaagctgtcaaggaaagtgtttccagc
ttcgtacgcaaaaccaccgaaaagattggcacatttcatgtgtgtcctgatgtcaaagtg
aggcaggaagtgaaagatgaggagcagccacatgaggtgactgcaagtatagcggcatac
ccccaggaagaagacaaaaacatagtggagcaaagccagcctccagaagtggaccagcta
agagacctcaaggtagcaacagtagaagctatagtcaaactccaggatcctcttatattg
ttagaaccacaatgcttgaaggaggtattacaggagtggtttttgtacctggaagaaaca
tttgccttcagagagccttccatttcagatgacagttcatccattacagatgatggctta
tctattaagcaagacaaaactatgtttgctgaagaacagagtgaaggcttggaagaaaac
attgaactacctcaaaataacgaagttcacgtagacaaaggagagagtggtgccctggag
tacaacatggaaaagaatgaagctagcgaagctcatgcaggcaaaactgtatgtgaaaat
gatgccactgcaaaggaaaccttggatcattcttttagagtgtatcctccatgttctata
ccgcaagaggtgcataaggatctagttgagttgacaacgttgtgttttgaattaaacgtg
tttgcttgtgagagcaagcctacaaaagaaagctctgagcagcgtttgccattaacaact
ttatgggttttggcttgtaggtttatacaaagctacttctttctcttggatttaaaaaga
ctaaaggatttcattataatcaattatgccaacagtcccaatatttgggaaacttacatt
gaaggattgaaagagctgacacacagtagtccagtgacttcggcaatggaaaatggcgat
atgttgaaaacattaaaattattaaatgacctgagaccctgggatagccctctgttactg
gcacacgtccaaagactctatgagaagtttggagaaacagctctgaggcccttgatcaag
ttctacccgtccatcttgccttctgacatcatgcagctttgtagacatcaccctgcccat
ttcctggcatatttagatagtcttgtaaaatccaaaccagaagacaaaagggcatctctg
cttagatcacttcttcagcctgaatccttacgactagattggctagaatgggcagtttct
tatgatgcaccacaaaaagcaaacactgtggatgctgagggaaaccccagcccacgttca
cacttgtttacctggggatatagccaactgattttgcttctcattaaactcccagctgat
tttgtaactaaagaaaagatggctgacatctgtaagtcacatggcttctggcccggatat
ctttcactttgtttggagatggatagaagaaaagaagcctttactaacattgttcatttg
gatgatatgaacctgttagatgaagaacatgattcacttccagagactatggacgaatgg
aagttccttctccaccttgcacagagtcacagcacgggtccccaccatgctggtgcacag
aatgggaatactgtcagcaatggcagctctgattggtctaactgcatcactgttgaaaat
atagctctcttgttagcaaaggtgattgggccagataatgcattgccactattgcaggag
tgtggcttgacagtcgaattgtctgacagatttaccagggtctgcgagatactgagaatt
gcagaaaaaaggcagagagccctcattcagtccatgctggaaaggtgtgaccggtttttg
tggtctcagcagacatag
DBGET
integrated database retrieval system
