Alligator mississippiensis (American alligator): 102560342
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Entry
102560342 CDS
T03087
Symbol
ALMS1
Name
(RefSeq) ALMS1, centrosome and basal body associated protein
KO
K16741
alstrom syndrome protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102560342 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
amj03037
]
102560342 (ALMS1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
102560342 (ALMS1)
Cilium and associated proteins [BR:
amj03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
102560342 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ALMS_motif
FliN_N
Motif
Other DBs
NCBI-GeneID:
102560342
NCBI-ProteinID:
XP_019351208
LinkDB
All DBs
Position
Un
AA seq
2895 aa
AA seq
DB search
MEHGPGPGPSIATTPPHSSWKEELLSQSSSGTQISIASGISLGEVIRQRSAINQGMEPWY
QLPAEADASHLTAALGTRVDLTTGENNLTEFPTLEEGSLTLTEEAGTQHEDVTHNPLPEI
QDSRFSPRFPLLMTYATPGQRLLDETLFQQTDLNFAPLRGTPDVSGASEQHLRPLQISEA
VQLAATEVTSHSDSGTLSQHPLAISAFEPYGVNCSSYVSQPRLSSSGQITVERKQAAEGQ
DCKSDFSVTDLLPKEGGEDLTTPTSKWLQNDSAKSQQSETPFATEAKSAFVNDDPFFLDS
RVPAPALLELLETEVGVTSHGGFSSSSENSSCKSVSTKDPEKHKTRQQVENTDLAECESK
ALEKYQELHQQLEGGKSTSELGSSKMSEPLQNTNAKDASSTKSTEMFVLPKGHGASLSDS
ARLQFSSVTREPRGALLAEQPKQLCPTVMSEQHKEEPAPDVVTTNLRGNQPHPSITSNAK
SPSPSSEKETSVVEIQAGVSGRESTLSDVIVERGHKDAGISPSFNLPPGDGSFCGYLACP
IYQSTPGLFLGRHMKEEVPGMVIPIKSSLQASLTGLNEETSAKSSASTLTPCVEKCHAPT
NGQEENRESLGTAYPYTGRIQSLPSLSFMEKVGAWNVSQSAEKMSDALALHSLGGVSPRK
QTYSTIADSLNHILSKQNNSGNLKSGLAASFGGEAGSVTSLHFCDTKSTHAAPLARSQSD
HSVNAISREASQIEVVQVTNPEEVVQPTAGKSSDFAMPALKKSEESLVDYTSQKFKAVLV
SAGSSDDEHDDEENSTGQISDQNILISSERVAQLLRQEGCDPNDKEKKYSRLEDEPRQLH
GPEHSTGHISMDNFSDISPDSLNLLVSSQASSQVDLTSVSPSSVVSKHFFNNSEEENFTP
SWAPAWKTPDEKELNIEERIPTYLRNLGIDQSPSSILTPFAPRGPIREVEFSPSELRTLK
GSTDTLTKHVQLSEGGSLSAVDITQISFNSGNSTLSMSIAMGSDGGPDTPVPTELSPQYS
RSSKDKPLSQCSTAAYPQLQLLTPLPDEGSLKSSVAPRLVEPRQQLQAVASDFHSDEEDP
MLVSKHVQDLIDRCDSRDISSSLEKLSTSSLAEDIGEMEVKGELLSSNAVASENELNKDQ
GNDPFIESSTLKEIQKLLAEAEKMTLSQFDPVLSLTPSREVTDPSPASTKKKDGVEDSQL
VRDHSPALERLLSRDETLTRKSMQEDNSLMKTLHSCKDSLKSEGALAGDLRVSQETAERQ
TKPAEKIAGEDFRVAKLVGRSEPEGCSSATTDKNLLAPLAVMKSATSSESSIRKVFELED
PPTAVPLRTGATVLRDCQHGSSQASLAGSKEGDVIQGSDDSSSLDSLAARVRSLLKYESP
AIHATQILKSVEEEEKKARTWVKLKLASQPHGSLPDLNEEDRKRIEEIKAELLLSARKSA
LAKDSWGNSSDIIPSHSHNQKHYPEHFHSPHSEQMQTDNQMQDFELEPSESYGRWVMPVY
TTDSPDYSLSSNTQFKALDTFQAQIPNQLHTLATNPFDISIELTPLCKGVDACLMGLVDA
SNAQTEEDVPFPAQKKLSVEKPPAEIAKQITSITFASRKRSPSPVLGTSLTEDALRGVIP
LQDGSTSTEKQRLEKRPLETSRSCPSSPTATCSLASGVKPTADQDSFQHVATGVAKPGAH
QGKDQAQESKSIYPDPCFSLVATSFEAAQTSAQDAVGLGRLNARLSVADCAKKFNQESNT
LSEPVPISFYQPGKTSPSSQAQFTEGPVYSPQAHMLKGHNNLLEKEDKLPFDILSLHQRE
METGHSNGMHNPSPDQILATVPVSPSSPTRKALSCVRITLSPKCATSEPCGNLRAEAETR
FNDRIKSDVQPTLVRSPKTLLGPVSKLPTAELVPVDQGSSYFPRPGSSPPPSPAHPFVPG
TAGLAHDIKRVSLESSQRVPSLREAHTRGLDTSGRNVQDSFRTLVSAQTGKTTSDAITQI
TTESPEKTTFSAEIYVSTEEEENPALISSRQKARRIPSLAASSRNQIFSSHRPAVRADQP
LLVPYKPSGSREMYYVPHPKEAPKISPVRSETTIESSHSGSNDAVPPKFPVNVLGSREES
PPDVAIKHKEGIYSKRPEPKLAWGKEKTAPQESDTESANPLKAVRTTHSVFKSAQFYLHH
PVPLQHENYFLSNSESSEEYPDTGPSGLPSRDCFQKTRAAEKDHCPPLLYREEDKEDEFA
PLTTVMDYSKIEDSQFCACLGNEASQKELIIQDDKRQASQTKGRDYPPRSSQMTGFQVRP
KKDLPLKQSTDSTGSLDDLWAKFLERQKKHPLPNVRSNELSLVERLDRLARVLQNPVRHT
LMPAKEESDFGGRTKGREQKKIRLQDWNESDAHRNALRAEERPQTTYDKKRLAESRKYRA
GERTISRIKRILEQQQYSDTLSDTSSEPKSANDHSRVAITTTSESDVVSQTETEMATQTE
VSSSVSTIDTARLIRAFGHERVRVSPRLSHLYFTISQQKSRSDIWGQGSRKGKGVEYPKA
TYAELHRKREIQVVDCVSSDSVSTASSSWGPSSALSTKRRARMLNKGIQAGDLEIVNSAT
KKNTRDVGVTFPTPRSGQSRPREPWSSADGVCGEPGGPVSDLQMPLGKARQKGHTSSLLM
DKKTKRNRPQLPQVGVSWFVPAEDLKSDSRKENRSSSFSGPGPSWFEPLANTKPWREPLR
EKNWQERRGSSLVQPIIPVRDVENKPPRSLVKMTLQEALVLHRPDFISRSGERVKRLKLI
MEERKIQSVLQNEREELFNPPEKRKVYKNASCLLSNRDFQVRQERRTIPKGEMVQRSKRG
NANNDVFRKGGLLGAATDRVGKQGQKRRIYEQLPEVRKRREEEKRKSEYNSYRLKAQLYK
MKITNRVLGRKVPWN
NT seq
8688 nt
NT seq
+upstream
nt +downstream
nt
atggagcacggccccggccccggcccctctattgctaccaccccaccacactcgagttgg
aaggaagaactgttaagtcagagcagcagcgggactcagatttcaattgccagtgggatc
tccttgggagaagtgatccggcagcgatctgctatcaatcagggaatggaaccgtggtat
cagctcccagcagaagcggatgccagccatctcacggcagcattgggcacgagagtggac
ttgaccacaggtgaaaacaacctgaccgagttcccgaccttagaggagggctcgttgacg
ctgacagaagaggctgggacgcagcatgaagatgtgacgcacaacccactgccagaaatt
caggacagtcgcttctctccccgtttcccactgttgatgacctatgctacaccgggtcaa
aggcttttggatgaaaccctgtttcagcaaaccgatctgaattttgctccgctaagagga
acccctgatgtttctggtgcttctgagcagcatttaagacctttgcagatcagtgaagct
gtgcagctggcagccaccgaagtaacctcacattcagacagcggcacgctgtcccaacat
ccacttgcaatcagtgcatttgaaccttacggtgtcaactgcagcagctatgtatctcag
ccccgactttcctcgtctggacagataactgtggagaggaagcaggcggctgaaggtcaa
gattgtaaatctgacttcagtgtcacggatttgcttcctaaagaaggtggcgaggattta
acaaccccgacttcaaaatggttgcaaaatgattcggctaaatcacagcagtcagaaact
ccttttgcaacggaggccaaaagtgcttttgtaaatgatgatcccttctttctggacagc
agagttccagctcctgctctcctcgagttgctggagacagaagtaggcgtaaccagccac
ggtggcttctcatcttcttcagagaactcctcgtgcaagagtgtgtcgactaaagaccca
gagaaacataaaacaaggcagcaggtggaaaacacagatctggctgagtgtgagtcaaaa
gcattagaaaaatatcaagagttacatcagcagctggaaggaggaaagagcacttctgag
cttggttcttccaagatgtctgaaccccttcaaaacactaatgccaaagatgcatcttct
acaaagtctactgaaatgttcgtgttgcctaaggggcacggcgcaagtttgagcgactct
gctcggctgcaattctccagtgtaactagagagcctcgaggagctcttctggccgagcag
ccaaagcagctgtgtcctacagtgatgtctgagcaacacaaagaggaacctgcccctgat
gtggtaacaacgaatctcaggggcaatcagcctcacccgtcaatcacgtctaatgcaaaa
tctccttcaccctccagtgaaaaggagacgtctgttgtggaaatccaggctggagttagt
ggacgtgaatcaactctttcggatgttatcgtagagagaggacacaaagacgcaggaatt
tcaccttcatttaaccttcccccaggtgatggctccttctgtggatatctggcctgtcca
atctatcagtccaccccagggttatttttaggcagacatatgaaggaggaagtacctggc
atggttattccaatcaaatcaagccttcaggcctctcttacaggcttaaatgaagaaact
tctgcgaagtcttctgccagcacacttacaccttgtgtcgagaagtgtcatgcacccaca
aatgggcaggaagaaaacagagagtcgttaggaacagcctatccgtatacggggagaatt
cagtctctgccttcacttagttttatggagaaagtcggggcttggaacgtgagccagtcg
gcggagaagatgtctgatgctttggctttacacagcctgggtggagtttctcccaggaag
caaacatacagcacaattgcagattccttaaaccatattttatcaaagcagaacaacagc
ggtaacctcaagagtggtctagctgcatcctttggaggagaagcaggttcagtgacaagc
ttgcatttctgtgacacaaaatcgacacatgctgcacctcttgctcggtcgcagtctgac
cattcggtcaatgcaattagcagggaagcttcacagattgaagttgttcaggtaacaaat
ccagaggaggtggttcagcctacagcaggcaagagcagtgattttgccatgcctgcactt
aaaaaaagtgaagaaagcttagtagactacacgagccaaaaatttaaagctgtccttgtc
agtgctgggtccagtgatgacgaacatgatgatgaagaaaatagcacggggcaaatttca
gaccaaaatatcttaatttccagtgaaagggttgcccagcttctgagacaggaaggatgc
gatccaaatgataaggagaagaaatacagtcgtttagaagatgagcctagacagctgcat
ggcccagagcactctacaggccatatcagcatggacaatttcagtgatatttctccagat
agtttgaacctcctggtgagttctcaggccagtagccaggttgacctgacttcggtaagc
ccctcttcagtagtttccaagcacttcttcaacaattcagaagaagagaacttcacccct
tcttgggctcctgcttggaaaactccagatgaaaaagaactaaatattgaagaaaggata
ccaacctatctccgtaatcttggcattgaccaatcaccttcaagtatactgactccgttt
gcacccagaggtccaatcagagaggttgaattttccccgtccgagctcagaacattgaag
gggtccactgacacgttaacaaagcatgtccagctatctgaaggaggctctctgtctgct
gtcgacatcacacagatcagctttaactcgggcaattcgactctcagtatgtcaatagca
atgggctcggatggtggacctgatactccagtacctaccgaactctcacctcagtattca
agatcgtcgaaagacaaaccattgagtcagtgcagtactgccgcctacccccaactacaa
ctgcttactcctcttccagatgaaggcagcttgaagtcttcagttgcccccagattagtt
gagccaaggcagcaattacaagccgttgcctccgatttccactcagatgaagaagatcct
atgcttgtttcaaagcacgttcaagatctgatcgatagatgcgactcaagggatattagt
agcagcctagagaagttgtctaccagttcgttggctgaggatatcggtgaaatggaagta
aaaggagaactactctcttcaaatgcagttgcctctgaaaatgaactaaacaaggaccaa
ggaaatgatcctttcattgaatccagcacgttgaaagagatccagaagcttttagcagag
gcagagaaaatgactctgagtcagtttgatcctgtcctttctcttaccccctccagagaa
gtcactgacccttcaccggcgtcaactaaaaagaaggatggtgttgaagattcccaatta
gtgagggaccacagcccagcgcttgaaaggctgttgtcccgggatgaaacgttgacccga
aagagcatgcaagaagataactcactaatgaagactctccattcctgcaaggacagttta
aaatcggaaggagcacttgctggcgatttacgggtcagtcaagaaactgcagaacggcag
actaaaccagcagagaaaatagctggtgaagatttcagggtagcaaaactcgttggaagg
tctgagccagagggctgcagtagtgcaaccacagataaaaacctgcttgctcctctggct
gttatgaagagcgctacaagtagtgaatcaagcatcagaaaggttttcgaactggaagat
cctcctactgcagtgccgctccggaccggtgccactgtcctcagggactgccagcacggc
tcatctcaagctagtttagctggcagcaaggagggggatgtcattcaagggagtgatgac
agtagcagcttagattcactagctgcccgtgtcagaagccttctgaaatacgaatccccg
gcgatacacgcaacacaaatcctgaagagcgtagaggaagaggagaaaaaagcgcgaacc
tgggtgaagctgaaactggctagccaaccccacggctccttgccagatctgaatgaggag
gacaggaagcgaatagaagaaatcaaggcagagctgcttttgagtgccaggaaatctgca
ttagccaaggattcatggggaaacagctcagacattatacccagtcacagccataatcag
aagcactaccctgaacatttccactctccacatagcgaacagatgcaaactgataaccag
atgcaggatttcgaacttgagccttcagagtcgtatggaagatgggtcatgccagtatat
acaactgactcacctgattattcactgtcgagtaatacacagtttaaagctttggatacc
ttccaagcacaaatcccaaaccagcttcacaccctggcaactaatccctttgatatcagt
attgagcttacccccttgtgtaaaggtgtggatgcatgtttgatgggattggtggatgcc
tctaatgcacaaacagaagaggacgtgccttttccagctcagaagaagctatctgtagaa
aaaccacctgcagaaattgctaaacagattacctccatcacatttgcatccagaaaacgt
tccccgtctcctgtccttggtactagcctcactgaagatgctcttcgtggtgtaataccc
ttgcaagatggatctactagcactgaaaagcagcgacttgaaaagcgacctctagaaact
tctcggtcatgtccttcaagtccaacagccacttgcagtctagctagtggtgttaagcct
actgcagaccaagacagttttcagcatgtggccactggtgttgccaaacctggagctcat
caagggaaagaccaagcccaagagtctaaatccatatatcctgacccatgtttcagcctt
gtggcaactagttttgaagcagctcagacttctgctcaagatgctgttgggttgggcagg
cttaatgccagactttctgtggctgattgtgctaagaaatttaatcaagaatcaaataca
ttgagtgaacccgttcccataagtttttatcagccaggaaagacgagtccctccagccaa
gcccagtttacagaaggtccggtttatagcccacaagctcatatgcttaaaggccataat
aatttgttagaaaaggaggataagcttccatttgatatactctctctccatcagagagag
atggagacaggacatagtaatgggatgcacaatccctccccagatcagattttggccacc
gtgccggtatccccgtcatctccaactagaaaggctttgtcttgtgtccgtataactctc
tccccaaaatgtgctacttcagagccatgcggtaacctcagagctgaagcagaaacaagg
tttaacgacagaattaagagtgatgttcagccaacacttgtaaggtctccaaaaactttg
ttagggcctgtctcaaagttaccaaccgctgaacttgttccagtggatcaagggtcttca
tacttcccaaggccaggatcttcaccacctccgtctcctgcgcatccctttgttcccggc
acagcaggactagcacacgatataaagcgggtgtccctggaaagcagccagagagtcccc
tccttgagggaggcacacacgagaggtctggatacaagtggacgtaacgtgcaggatagc
ttcaggaccctggtttctgcacagactggaaaaacaacatctgatgccattactcagatc
acaacagaaagccctgaaaagacaacgttttcagcagagatttatgttagtacagaagag
gaggaaaaccctgccctcatatcctctcgccagaaggcacgcagaatccccagccttgcc
gcttcatctcgcaaccagattttctcgtcccacaggccagctgtacgtgcagatcagcct
ttactggtgccgtataagccttctggtagccgagagatgtactacgttccccatccaaag
gaagcacccaaaatatctcccgtcaggtcagagaccactattgagagctctcactcagga
tcgaatgatgccgtccctccaaaatttccagtgaacgtactggggtcaagggaagagagt
cctccagacgtagctattaaacacaaagagggtatctacagcaagaggcctgagcccaag
ctagcctggggaaaagaaaaaacggcaccacaagaatctgatacagagtctgcaaatcct
ttgaaagctgtaagaacgacccattctgtcttcaagtcagcacagttctaccttcaccat
ccagtgcctctgcagcatgagaattacttcctctcaaacagcgagtcctccgaggagtat
cctgatactggacccagcggacttccttccagagactgcttccagaaaacgagagctgca
gaaaaggaccactgcccacctcttctttatcgtgaagaggacaaggaagatgaattcgca
ccactaaccacagtaatggactacagcaagattgaggactcccaattctgcgcatgtcta
ggcaatgaagcttctcagaaggaattaataatccaagatgacaaaaggcaggcaagccag
acaaagggcagagattatccgccacgaagcagccaaatgactggctttcaagtgaggccg
aagaaggatctgccactgaaacagagtaccgattccactggcagcttagacgacctctgg
gccaagtttttagagcgccaaaagaagcacccgctccctaatgttcggagcaatgagctg
tctttagtggagcgccttgatcgactagcaagagtcctccagaatcccgttcggcatacc
ctgatgcctgcaaaggaggagagcgattttggagggaggactaagggaagggaacagaag
aaaatcagactccaggactggaacgagtctgacgctcataggaatgcattgcgcgctgaa
gaaaggccacagaccacttatgataaaaaaaggctggcagaatcacgaaaatatagggca
ggagaaagaaccatcagtcgcatcaagcgaatcttggaacagcagcagtactcggatacc
ttgagtgacacctcttcagagcccaagtctgctaacgaccacagcagggtggcaattact
accacctctgaatcggacgtggtgtcccaaacagagacagaaatggctactcagactgag
gtgagcagttccgtttccaccattgacactgccaggctgatcagggcttttgggcacgaa
agagtgcgcgtgtcaccaagactgtcccacctgtattttaccatcagccagcagaaaagt
cgctctgacatttggggccagggaagcaggaaaggaaagggtgtggagtatcctaaagct
acttatgctgagctgcatagaaaaagagagatccaggtagtcgactgcgtttcatcagac
tctgtttctacggccagcagttcctgggggcccagctctgctctcagtaccaagcgccgc
gcacggatgttgaacaagggcatccaagcaggagacttggagattgtgaatagtgcaact
aagaaaaacacgcgagatgttggtgtgactttccccacgccgagatctggccaatcaagg
ccccgggaaccctggagtagtgctgatggtgtttgcggggagcctggtgggccggtttca
gatcttcaaatgccactaggcaaggctaggcaaaaggggcacacaagcagcctgctaatg
gacaagaagaccaaaaggaacaggccacagctaccacaagtaggagtttcctggtttgtt
cctgctgaggatttaaaatctgactcgaggaaggagaacagatccagttccttctctggt
cctggaccatcctggtttgaacccctggccaacacaaaaccctggagagagcctctccga
gagaagaattggcaagagcggcgaggcagcagcctagttcaaccaataatcccagtaaga
gatgttgaaaacaagcccccacggtcacttgtgaaaatgacactgcaggaagctctcgtg
ttgcaccgccctgatttcatctctcgctctggcgagcgtgtgaagcgtctgaagctcatc
atggaagaaaggaagatccagagcgtgttgcagaatgagcgcgaggaactgtttaatccc
cctgagaaaaggaaggtctataagaacgctagttgcctgctctccaacagagacttccag
gttagacaggaaaggaggactattccaaagggagaaatggtccaaagatccaaacgaggt
aatgcgaataatgacgtttttaggaaaggtgggcttctaggagcagccacagacagagta
ggaaaacagggacagaagagaaggatctatgagcagctgccagaggtgcggaagaggcga
gaagaagagaaaagaaaatcggaatataattcataccggctgaaagcacagctttacaaa
atgaaaatcaccaaccgtgtcttggggagaaaagtgccttggaactga
DBGET
integrated database retrieval system
