Alligator mississippiensis (American alligator): 102560671
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Entry
102560671 CDS
T03087
Symbol
NPAS1
Name
(RefSeq) neuronal PAS domain protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102560671 (NPAS1)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
102560671 (NPAS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
102560671
NCBI-ProteinID:
XP_014457069
LinkDB
All DBs
Position
Un
AA seq
854 aa
AA seq
DB search
MAAPFGNEVKCVSVEWDFLQGLLVKNQPVPCLQALRKEKSRNAARSRRGKENFEFYELAK
MLPLPGAITSQLDKASIVRLTISYLKMRDFASHGQPPWVLRAEGAAPTGKGLGAPGRRNV
AVLLTELFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSIFDYI
HPGDHPEVAKQLGLKVPGEASSPPPGTQKPPSLAGPNGAGSTSLLPAPEPGKQHVPSIPG
RDDALARAFFIRMKSTLTKRGLHVKTSGYKVIHVTGRLRPRLPAFAHGPGARGRLMGLVA
LAHTLPPSTLSEVRIECHMFVFRVNLDLQIVYCESRVSDYMDLCPSELVGKSCYQFIHGE
DVEGIRQSHLDLLNKGQVVTRYYRWLQKNGGFVWIQSCATISVNVKNPSERNMVWVNYIL
SKPEGKNTALDVFQLPAAPAPGADACDLEPEFPESERGSDSKQGKHYLFKQVGTSGKSVG
DDEARHSAQETPASSLEPGYKDEESSREAGLSDGESRCQGPRSKRIKLEFQPESPSREAE
AASLLSTEESESGSDEEARPGARAGARKSAGSLAGAQGRLSTSEFTSVIQTQQRSGSPGS
GVKTERAQAPKYSKGPPWTYPLAQDTLAEGVPYAASKAPGLEKPPAAHLYVSIPDAVLTP
PEMDSSGGVAKAAFGSSPRVVLPASSADTLSPPLSGSPCEDRATSTPSYPGEMEALPRYH
AGNVVLPLVAPPLGGHGAGPAGSQSLYATSTIRYAPADVALAVPGHVLPAAHALNFMDLG
AAESKASVELMYHHLQRLNMVAPFGNAAGAAGLAQLSGVAGGVFAATESLFSALPFSMGG
GGIHSTAALERKED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccgttcggtaacgaggtgaaatgcgtcagtgtggagtgggacttcctgcag
gggctcctggtcaagaaccagcctgtgccctgcctgcaggcgctgaggaaggagaagtcg
cgcaacgcggcgcggtcgcggcgcgggaaggagaacttcgagttctacgagctggccaag
atgctgcccctgcccggcgccatcaccagccagctggacaaggcctccatcgtgcgcctc
accatcagctacctcaagatgcgcgacttcgccagccacggccagcccccctgggtgctg
cgggccgagggcgccgcccccaccggcaaagggctgggggctccgggcaggaggaacgtg
gctgtgctgctgactgagctcttcgaacagcacctggggggccacatcctgcagtcgctg
gacgggttcgtgttcgccctgaaccaggaggggaagttcctctacatctcggagaccgtg
tccatctacctggggctctcgcaggtggagctgacaggcagcagcatcttcgactacatc
caccccggggaccaccccgaggtcgccaagcagctggggctgaaggtgccaggtgaggcc
agcagccccccgccaggcacccagaagccccccagcctggctgggcccaacggagccggc
tccacctccctgctcccggcgcccgagcccggtaagcagcatgtcccctccataccgggc
agggatgacgccctggcccgggccttcttcatccgcatgaagtccaccctcaccaagcgg
gggctgcacgtcaagacgtccggctacaaggtgattcatgtgacgggacgcctgcgccca
cgcctgcccgcctttgcccacggcccgggggcgcggggccggctgatggggctggtggca
ctggcccacacgctgcccccgtccacgctcagcgaggtgcgcatcgagtgccacatgttc
gtcttccgcgtcaacctggacctgcagatcgtctactgcgagagccgggtcagtgactac
atggacctttgcccctcggagctggtggggaagagctgctaccagttcatccacggcgag
gatgtggaggggatccgccagagccacctggacctgctgaacaaggggcaggtggtgacc
cgatactaccgctggctgcagaagaacggggggttcgtctggatccagtcgtgcgccacc
atctcggtgaacgtcaagaacccgagcgagaggaacatggtctgggttaattacatcctc
agcaagcccgagggcaagaacacagcgctggacgtcttccagttaccagcggctccggca
ccaggggccgatgcctgcgacctggaacccgagttcccagaaagcgagcggggctcagac
agcaagcaggggaagcactacctgttcaaacaggtcgggacctcgggtaagagtgtgggg
gacgacgaagctcgccattctgcgcaggagaccccggccagcagcctggagccgggctac
aaggacgaagagtcgtccagggaggccgggctgagcgacggggagagcaggtgccaggga
ccccgcagcaaacggatcaagctggagttccagcccgagagcccctcgcgggaggcagag
gcggcttcgctgcttagcacggaggagtctgagagtgggagcgacgaggaggctcggcct
ggggctcgggcaggtgccaggaagtcagctgggtccctggcaggcgcgcagggccggctc
agcacctccgagttcacctccgtgatccagacgcagcagcgcagcggatcccctggctct
ggggtgaagacggagcgcgcccaggcccccaagtatagcaagggacccccttggacctac
cctctggcccaggacaccctggcagagggggtcccctacgccgcgagcaaagcaccgggc
ctggagaagccgcccgcggcccacctttacgtctccatcccggatgcggtgctcaccccg
ccggagatggacagcagcgggggcgtggccaaagcagccttcggctcctccccccgggtc
gtgctacctgcctcctcggccgacacactgtcaccgcctctctcaggctcgccctgcgag
gatcgggccacatccacgccctcctatcccggcgagatggaggcgctgccacggtaccac
gcaggcaatgtggtgctgccgctggtggctcctccgctcggcgggcacggcgccggcccg
gccggctcccagagcctgtatgccaccagcaccatccgctatgccccagccgacgtggca
ttggccgtgccgggccacgtgctgcctgctgcccacgccctcaacttcatggaccttggg
gcggccgagtccaaggcctcggtggaactcatgtaccatcacctccagcgcctcaacatg
gtggcgccctttgggaacgcggccggggccgccggcttggcgcagctctctggggtggcg
gggggcgtcttcgcagccaccgagtccttgttctccgcgctgcccttctccatgggggga
ggtgggatccacagcaccgccgccttggagcgcaaggaggactga
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