Alligator mississippiensis (American alligator): 102560792
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Entry
102560792 CDS
T03087
Symbol
DCHS1
Name
(RefSeq) dachsous cadherin-related 1
KO
K16507
protocadherin-16/23
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amj04515
]
102560792 (DCHS1)
Cell adhesion molecules [BR:
amj04515
]
Cadherins
Cadherin related
102560792 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
CADH_Y-type_LIR
LapA_dom
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
102560792
NCBI-ProteinID:
XP_019341954
LinkDB
All DBs
Position
Un
AA seq
1792 aa
AA seq
DB search
TAASFLLVVEATDQARNASQRRSAAVTARVFVTDENDNAPTFLSPSTVHVVEDQPTGFVA
LHVVARDGDLGENGRVSYALRAGNADGRFHLNPSTGALSIVRALDREEVAQHNLTVVATD
HGFPRRSATQLLSVLVLDVNDEAPVFTQPDYEAGMRENLPSGTSVLQVRATDRDLGANGE
VRYGGLSGGPFSIHPQTGLITTTRALDREEQELHVLTVYARDSGLPPNVAKATVRILVGD
ENDHAPHFESQSCSLEVPENESRVMLHVLRATDPDAGENGRLEYYVEDGDPAQDFSLDPA
SGILSTAHSLDREHTAAYVLTVVARDHGMPQRSATTTVHVRVLDLNDHAPRFAEAAYAME
VPEDLPVGALVLQLVAQDPDEGTNGRVSYYLGNESLGTFQVDPESGRITSAQALDRERRP
SYSFLATAVDSAPWEPKSAAVRVTVTVQDVNDHAPTFLQSPLTITLPHHTPPKQVVATLR
AEDRDAGANASVLYRFAAPTPGFAINSYTGAIQLLQPLSSLGPRQRTLFVLATDQGQPAL
SSTGVVVIRLQDEGDRGVRFPRSTSEVALPENAAAGTAVVTVQAMHAGGSSGRITYSIVS
GNERGTFLIQPHSGTISVRDSRSLDFEASPRLRLVVQAETPSAFGFTAVNLNLQDVNDNL
PRFQLQNYVAFIWEAQGYDSPVIQVLADDLDQGANGQVTYAINQSLPMNGLYHIDAQTGA
ITTAAILDREIWSQTRLVLTAVDRGNPPLVGSATLTVVVMDVNDNSPTIPLPWEVRVPEN
TLLGTEITQVTGNDVDSGPALSYALVLDGDAAGTFGVLRYGGHIALTGPLDHEQRSRYAL
TVRASDSRHEAEANLTVIVEDINDNAPVFSQGLYQVTLLEHTPAGSAILTVSATDRDSGS
NGEFTFHLATPSAGVSIDPSNGTLFTTQRAAFDASRPTLDLVVEARDGGSPGLSAWATVQ
IRVVDVNDHSPAFQQPHYNACVPEDLRPGTTVLMLEAGDADLSRENAGFDYTIVSGNGGN
AFQVESRVGWVGGHLRTQGALVLVEPLDFEATPLYNLTVAASDRGLPQRSTAVPVLVTVL
DVNDNPPVFARAEYRAAVSESAPPGTELLRVVAQDADSGPHGRVRYSISSGDQRGLFQLH
ESTGALRLVQPLDCETQALHALVVQASDGPGGHFALVPVAIEVKDVNDNKPYFPVETVSA
GLRENLPPGTLVTTLRAVDADAGAFGELHYTVLDQPVGAPGAAEAHDSFTINSSSGELRS
RLTFDYERAKAFQLLVRAVDAGNASATVTVRVLVTGEDEYDPVFQDPPFHFEVPEGARKG
QSIGRVEATDEDEGVDGVVLYALAKPSPYFGVNQTTGAVYLRVDSQPQPAGRAKREPREM
SLEVQARSPLPGSRSASTQVTVDITHTTFGLAPELNLLLVVAVAASLGVVVVLATMAIVL
ALIRSRQRRGRKKSEPDAQLSHVQSGSLQKLGHEEPALPGGDHIYHQTLPGYGTEPAGPY
TRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSLQEHLAARGPDSGIQQDADQ
LSDISCEPGALEGAQWFKSKKGSGLLLPGQPPQLYREDGGGSAFLGVGCGLSVSGHPKDY
AFPEDGKPSVEGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFTEIARLKDESSLR
KPFPAKPKAEPKPRIDPPPLITAVAHPGAKSVPPKPAVGRTFPHLSSLRRSPISHEGSIS
SSAMSPSFSPSLSPLAARSPVVSPFGVSQGPSASVISAEHSLEPPDEAELRI
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
accgccgcatccttcctgctggtggtggaggccacggaccaagcacgcaacgcgagccag
cgccgctcagccgctgtcaccgcccgtgtctttgtgacggatgagaacgacaacgcgccc
acgttcctgtcgcccagcaccgtgcacgtggtggaggaccagcccaccggcttcgtggcc
ctgcacgtggtggcgcgggacggtgacctgggcgagaacggccgcgtcagctacgcgctg
cgggcgggcaacgccgacggccgcttccacctcaaccccagcaccggtgcgctgtccatc
gtgcgggcgctggaccgcgaggaggtggcgcagcacaatctgacggtggtggccacggac
cacggcttcccgcggcgctcggccacgcagctgctgtccgtgctggtgctggacgtcaac
gatgaagcgcccgtcttcacccagcccgactacgaggccggcatgcgcgagaacctgccc
tccggcacctccgtgctgcaggtccgggccaccgaccgcgacctgggtgccaacggggag
gtgaggtacggaggcctctccgggggacccttctccatccacccgcagaccgggctcatc
accaccacgcgggccctggaccgggaggagcaggagctgcacgtgctgacggtgtacgcc
cgggacagcggcctgccccccaatgtggccaaagcaacggtgcgcatcctggtgggggac
gagaacgaccatgcgccccacttcgagagtcagtcctgctccctggaggtgcccgagaac
gagagccgtgtgatgctgcacgtgctgcgggcgacggaccccgacgccggcgagaatggg
cgcctggagtactacgtggaagacggggaccctgcccaggacttcagcctggacccagcc
tcgggcatcctgtccactgcgcacagcctggaccgggagcacacagccgcctacgtcctg
accgtggtggcacgtgaccacgggatgccgcagcgcagtgccaccaccacagtgcacgtg
cgggtgctggacctcaatgaccacgcgccacggttcgctgaggccgcctacgccatggag
gtgcctgaggacctgcctgtgggcgcgctggtgctgcagctagtggcgcaggaccctgac
gagggcaccaacgggcgcgtctcctactacttgggcaatgagtcgctgggcaccttccag
gtagacccagagagcgggcgcatcaccagcgcccaggccctggaccgcgagcgccgcccc
agctacagcttcctggccacggccgtggactcagcgccctgggagcccaagagtgcagcc
gtgcgcgtgacggtgaccgtacaggacgtgaacgaccacgcgcccaccttcctgcaaagc
cccctcaccatcactctgccacaccacacgccgcccaagcaggtggtggccacgctgcgg
gccgaggaccgggatgcgggcgccaatgcatctgtgctgtaccgcttcgccgcccccacc
cccggctttgccatcaactcctacaccggtgccatccagctgctgcagcctctgagctcg
ctgggcccccgccagcgcaccctctttgtcctggccactgaccagggccagccagcattg
tcctccaccggcgtggtggtcatccgcctgcaggacgagggcgaccgcggcgtgcgcttc
ccccgcagcaccagcgaggtggccctgcccgagaacgctgccgcaggcaccgcggtggtg
accgtccaagccatgcacgcgggcggctcctcggggcgcatcacctacagcatcgttagc
ggcaacgagaggggcaccttcctcatccagccccactcagggaccatctcggtgcgggac
tcgagaagcctggactttgaggccagcccgcggctgcgtttggtggtgcaagccgagacg
ccgtccgccttcggcttcacggccgtgaacctcaacctgcaggacgtgaacgacaacctg
ccgcgcttccagctgcagaactacgtggccttcatctgggaggcgcagggctacgactcg
cccgtcatccaggtcctggctgacgacctggaccagggcgccaacgggcaggtgacctat
gcgatcaaccagtcgctgcccatgaacgggctgtaccacatcgatgcccagaccggggcc
atcaccaccgctgccatcctggaccgtgagatctggtcccagacacggctggtgttgacg
gcggtggaccgcgggaacccgccccttgtgggctcggccacgctgaccgtggtggtgatg
gatgtcaacgacaacagccccaccatcccgctgccctgggaggtgcgggtgcccgaaaac
acactgctgggcaccgagatcacgcaggtgacagggaatgacgtggactcgggtccagcc
ctgtcctacgcgctggtgctggacggcgacgcggccggcaccttcggggtcctgcgctat
ggtggccacattgccctgacggggcccctggaccatgagcagcgcagccgctacgccctg
accgtccgtgcctcggactcccgccacgaggccgaggccaacctcaccgtcatcgtggag
gacatcaatgacaacgcccctgtcttcagccaaggcctctaccaggtgaccctgctggag
cacacacctgcaggcagcgccatcctcactgtcagtgccacggatcgcgactccggcagc
aacggggagttcaccttccacctggccacgccaagcgccggcgtctccatcgaccccagc
aatgggacgctgttcaccacgcagcgggcagccttcgatgcaagccggcccacgctggac
ctggtggtggaggcccgtgacgggggctcgcccgggctctcggcttgggccacggtgcag
atccgggtggtggacgtgaatgaccacagcccggccttccagcagccgcactacaatgcc
tgcgtgccggaggacctgcgccccggcaccaccgtcctgatgctggaggcgggcgacgct
gacctgtcccgcgagaacgctggcttcgactacaccatcgtcagcggcaatggcggcaat
gccttccaggtggagagccgggtgggctgggtgggcggacacctgcgcacccagggcgcc
ctggtgctggtggagccgctggacttcgaggccacgccgctctacaacctgacagttgcg
gcctcggaccggggcctgccgcagcgcagcaccgccgtgcccgtgctcgtcaccgtgctg
gacgtcaatgacaacccgcccgtcttcgcccgtgctgagtaccgcgcggctgtgagcgag
agcgccccccccggcaccgagctgctgcgggtagtggcccaggacgccgactccggcccc
cacggccgcgtgcgctacagcatcagctccggcgaccagcgtggccttttccagctgcac
gagagcacgggcgccctgcgcctggtgcagcccctggactgtgagacccaggccctgcat
gccctggtggtgcaggcgtccgacggccccgggggccacttcgccctggtgcccgtcgcc
atcgaggtgaaggacgtcaacgacaacaagccctacttcccggtggagacggtgagcgcc
gggctgcgggagaaccttcctcccggcacgctggtcaccacgctgcgtgccgtggacgcc
gacgccggcgccttcggggagctgcactacacggtgctggaccagcccgtgggggcacca
ggcgcggctgaagcccacgactccttcaccatcaacagcagctccggggagctgcgttca
cgcctcacctttgactacgagcgtgccaaggccttccagctgctggtgcgggccgtggac
gctggcaacgcctcggccaccgtcaccgtgcgggtgctggtgacaggcgaggacgagtac
gaccccgtcttccaggacccgcccttccactttgaggtgcccgagggtgcccgcaagggc
cagagcatcggccgggtggaggccacggatgaggacgagggggtggacggcgtggtgctc
tatgccctggccaagccctcgccctacttcggcgtcaaccagaccacgggcgccgtgtac
ctgcgggtggacagccaaccgcagccggccggccgagccaagcgggagccccgggagatg
agcctggaggtgcaggcccgcagcccgctgcccggctcccgctcggcctccacccaggtc
accgtggacatcacgcacaccaccttcggcctggcccccgagctcaacctgctgctggtg
gtggccgtggcagcctcgctgggcgtggtggtggtgctggccaccatggccatcgtcctg
gcgctgatccgctcccggcagcgccgcggccgcaagaagtcggagccggacgcgcagctt
agccacgtgcagagcggctccctgcagaagctgggccacgaggagccggcgctgcccggg
ggggaccacatctaccaccagaccctgccgggctatgggactgagccggccgggccgtac
acgcggggcggctccctggacccctcgcactccagcggccgtggctcggccgaggcagcc
gaggacgacgagatccgcatgatcaacgagtacccccgcgtggccagcatcacctcctcc
ctgcaggagcacctggccgcccgtggccccgactctggcatccagcaggatgccgaccag
ctctccgacatctcctgcgagcccggcgccctggagggcgcccagtggttcaagagcaag
aagggctccggcttgctgctgcccgggcagcccccgcagctgtaccgcgaggacgggggc
ggcagtgccttcctgggcgtgggctgcggcctcagcgtctccggccaccccaaggactac
gccttccccgaggacggcaagccctccgtggagggctcgctcaccgccatcgtggccagc
gacgaggagctccgcggcagctacaactgggattacctgctcaactggtgcccccagttc
cagccgctggccagcgtcttcaccgagatcgcccggctcaaggacgagagctcgctgcgc
aagcccttcccggccaagcccaaggcagagccgaagccccgcatcgatcccccgcccctc
atcaccgccgtggcccaccccggcgccaagtcggtgccgcccaagccggccgtgggcagg
accttcccgcacctgtcgtccctgcgccgctcgcccattagtcacgagggctccatctcc
tcctccgccatgtcgcccagcttctcgccctccctgtccccgctggccgcccgctcccct
gtcgtctcccccttcggcgtctcccaggggccctccgcctccgtcatcagcgccgagcac
tcgctggagcccccggatgaggctgagctcaggatctag
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integrated database retrieval system
