Alligator mississippiensis (American alligator): 102560836
Help
Entry
102560836 CDS
T03087
Symbol
CSTF2
Name
(RefSeq) cleavage stimulation factor subunit 2
KO
K14407
cleavage stimulation factor subunit 2
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102560836 (CSTF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102560836 (CSTF2)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102560836 (CSTF2)
U7-dependent histone pre-mRNA processing factors
102560836 (CSTF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102560836
NCBI-ProteinID:
XP_006266064
LinkDB
All DBs
Position
Un
AA seq
589 aa
AA seq
DB search
MAGLAVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPVN
PEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
IVDPEIALKILHRQTSVPPLIPGNQQPVPGPGPGPGPGPGPNAQMNQQTPPSSQPQTIGG
MHVNGAPPLMQPPMQGGVPAPGQMPTSVQGPGPGPGPGPGPMAPGGGMQPQVGMPGSGPV
PMERGQGNLQLSPVGPARPASIERVQVPMPDPRAPMQRGPLPASGPPPRGLLGDAPNDPR
GGTLLSVTGEVEPRGYLGPPHQGPPMHHMPGHDNRGPPHEMRGGPMGEPRPLMGEPRGPL
MDARGGRDPRGMEPRGMEPRGMEPRGMEARGMEPRGMEPRGMEARGMEPRAMEPRGPGPN
PRGPMPGGIQGPGPLNMGANVPQGPRQVPNMPGAGMQGGGLPGAGVQGAGQPGGFSPGQN
QVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggcggtgcgggaccccgcggtggaccgctccctgcgctccgtctttgtg
gggaatatcccatatgaagccacagaggagcagctgaaggacattttctcagaggttgga
cctgttgtcagctttaggctggtatatgacagagagacaggaaagccaaagggttatggc
ttctgtgaataccaagaccaggagacggcgctcagcgccatgcgcaacctgaatggacgt
gagttcagtgggagagcattgcgagtggacaatgcagctagtgagaagaacaaggaagag
ctgaagagcctgggcacaggtgcccccatcatagagtcaccttatggggacccagtaaat
cctgaagatgcccccgagtccatcagcagggcagttgccagcttgccaccagagcagatg
tttgagctgatgaagcaaatgaagttgtgcgtccagaacagccctcaggaagcccggaat
atgctgctccagaaccctcagctggcttatgccctgctgcaagcccaggtggtgatgaga
attgttgatccagagatcgctctgaaaattctgcatcgccagaccagcgttccacctctg
atcccaggcaaccagcagccagttccagggcctgggcctggacctgggcccgggccaggt
ccaaatgcacagatgaaccaacagactcccccttcctcccagccacagaccattggtggt
atgcatgtgaatggagcccctcctctgatgcagcctcctatgcagggtggagtaccagcc
ccaggacagatgccaacctcagtacagggcccgggcccaggccctggccctggccccggc
cccatggctccaggaggtggaatgcagcctcaggttgggatgccaggcagtgggcctgta
cccatggaacgtggacaagggaacctgcagctctcgcccgtgggacctgccaggcctgcc
tctatcgagcgtgttcaagtgcccatgccagatccaagggcccctatgcagcgtggacca
ttgcctgctagtggcccaccaccccgaggtcttctgggagatgctccaaatgacccacga
ggagggaccttgctctcagtcactggagaagtggagcccagaggttaccttggtccaccc
caccaggggccacctatgcaccacatgcctggccatgacaaccgtggtccgcctcatgag
atgagaggaggaccaatgggtgaacccagaccactgatgggagaacctcgggggccattg
atggatgctcgaggtggaagagatccccggggcatggagcccaggggcatggaacctcgg
ggaatggagcccaggggcatggaggcaagagggatggagcctcgaggcatggaaccgagg
ggcatggaggccagaggcatggagcccagagcgatggaacccaggggccctggccccaat
ccaaggggcccaatgcctggtggcattcaaggccctggaccactgaacatgggagcgaat
gtcccacaggggcctagacaggttcccaacatgccaggggcaggcatgcaaggtggaggc
ctgccaggggcaggggttcaaggagcaggtcaaccaggaggctttagccctgggcaaaac
caggtcaccccacaagatcatgagaaggctgccctgatcatgcaagtcctccagctgact
gcagaccagattgccatgctgcccccagagcaaaggcagagcatccttattctaaaagaa
cagattcagaaatccactggggcaccgtga
DBGET
integrated database retrieval system
