Alligator mississippiensis (American alligator): 102562032
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Entry
102562032 CDS
T03087
Symbol
MSH2
Name
(RefSeq) mutS homolog 2
KO
K08735
DNA mismatch repair protein MSH2
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102562032 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amj03400
]
102562032 (MSH2)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102562032 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
102562032
NCBI-ProteinID:
XP_006273985
UniProt:
A0A151NWV2
LinkDB
All DBs
Position
Un
AA seq
937 aa
AA seq
DB search
MAAAEPPRDAPWPEGAGAEAAFVRAVLALPAKPDTTVRFLERGDYYTAHGTDAQLAARRL
FRTRAVIRHLPGAPGNQKLESVVLSKMNFESFVRDLLLVCHYRVEVYKNRAGSKSTKEND
WYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLSAAEGQRIIGVGYVDTTLRKLGVC
EFPDNDQFSNLEALLVQIGPKECVFPGGETVGDMGKVRQIIQRGGILITDRKKAEFTTKD
IVQDLNRLLKSKKEEQVTSAALPEMEKQVAISSLSAVIKYLELLSDESNFGQFELATFDL
SQYMILDNAAVRALNLFQGSSENANSTQSLVGLLNKCRTPQGQRLVSQWIKQPLMDKNRI
EERLNLVETFVVDTELRQCLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPN
VVQALEKHEGVHQMLLLTVFITPLHDIYSDFSKFQEMIETTLDMSKVENHEFLVKPSFDP
NLTELREKMNEIEESMQSCLKTAARELGLEASKSIKLESSSQLGHHFRITCKEEKVLRNN
AKYKILDTQKNGVKFTNSKLSSFNEEYLKYKEEYEEAQDAIVKEIINIASGYAEPIQTMN
DVIAQLDAVVSFAHVSSGAPVPYVRPVILEKGQGRIVLKGSRHPCVEVQDDVAFIPNDVT
FEKGKQTFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEVTIVDCILARVGAGD
SQLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIDA
FCMFATHFHELTALAGQVPTVSNLHVTALTADDTLTMLYRVKKGVCDQSFGIHVAELVAF
PKHVIESAKEKALELEEFQNIGEPEESEGEPAVKRCYREKQEGEKIIQDFVYQVKALPLT
DMSEEDIKTKLKQLKAGVLAKNNSFVNEVIARTKATS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcggagcctccgcgggatgcgccgtggcccgagggcgcgggggccgaggcc
gcgttcgtgcgcgcggtgctggcgctgcccgccaagcccgacaccaccgtgcgcttcctg
gagcgcggcgactactacacagcgcatggcaccgacgcgcagctggctgcccgccgcctc
ttccgcacccgcgccgtcatccgccacctgcccggcgcgcccgggaatcagaaacttgag
agtgttgtacttagtaaaatgaactttgaatcgtttgtcagagatctacttttggtttgt
cactacagagttgaagtttataagaatagggcgggcagcaaatctaccaaagagaatgac
tggtatttggcatacaagggctccccgggtaaccttgcgcagtttgaggaaattctgttt
ggtaataatgacatgtcaactgccattggagttgtgggtgtgaagttgtccgctgctgag
gggcaaagaataattggagttgggtatgttgacacaacactgagaaagctgggtgtctgc
gagtttccggataacgaccagttctcaaacctggaagctttgctagttcagattggtccc
aaggaatgtgtgtttccaggaggagagacagtcggagacatgggaaaagtgcgacagatc
attcagagaggaggaatcctgattactgatagaaaaaaggctgaattcacaacaaaagat
attgttcaagaccttaatcgcttactgaaatcaaagaaggaagaacaggtgactagtgca
gcattgccagagatggaaaagcaggttgccatttcatccctgtcggctgttatcaagtat
ttggagctgttgtcagatgaatccaactttggacaatttgagctggctactttcgacctc
agccagtatatgatactggataatgcagctgtccgagcccttaacctttttcagggttcc
tctgaaaatgccaacagtacacagtctttggttgggttgttaaataaatgcagaactcct
caaggacaacgactggtcagtcagtggatcaagcagccacttatggacaagaacagaata
gaagaaaggttaaatttggtggagacctttgtggtagacacagagctacggcagtgcctt
caagaagaccttctgcgtcgttttccagacctcaatcggctagcaaagaaatttcagaga
caagctgcaaccttgcaagattgttaccgaatgtatcaagctattaaccagctgcctaat
gttgttcaggcactggaaaaacatgaaggagtgcaccagatgttgttgttgacagtgttt
ataacacctcttcatgatatctactctgatttctccaagtttcaggaaatgatagaaaca
actttagacatgagtaaggtggaaaaccatgaattccttgtaaagccttcttttgatcct
aacctgacagagttgagagagaagatgaatgaaatagaggagtcaatgcaatcttgtctt
aagacagcagctagagagctagggttggaggctagcaagagcatcaaactggagtccagt
tcacagttagggcatcacttccgaatcacctgcaaagaagagaaagtcctccggaacaat
gcaaaatataaaatcttagacacccagaagaatggtgtgaaattcactaacagtaaattg
agctccttcaacgaagaatacttaaaatacaaagaggagtatgaagaggcccaggatgcc
attgttaaagaaatcatcaacattgcttcaggttatgcagagccaatacagacaatgaat
gatgtgatagctcagttagatgctgttgtcagttttgctcatgtatcaagtggagcccct
gtgccatacgtccgcccagtcattttggagaagggacaaggacggattgtgttgaaaggt
tccagacacccttgtgttgaagtgcaagatgatgtagcattcattcccaatgatgtcacc
tttgagaagggcaagcagacgtttcatattattactggccctaatatgggagggaaatct
acatacattcgccagactggagtgatagttcttatggcccaaattggatgctttgtaccg
tgtgactcggcagaagtgactattgtggattgtatcctggctcgggtaggagcaggagac
agtcaattaaaaggagtctctactttcatggcagagatgttagaaactgcttcaattctt
aggactgccacagaaaattctctgataatcattgatgagttgggaagaggaacttcaaca
tatgatggatttgggctggcctgggcaatttcagaatacattgcaagcaaaattgatgcc
ttctgcatgtttgccacacattttcatgaactgacagcacttgcgggccaagtgccaact
gtcagtaatctgcatgtcacagcacttactgctgacgacacactgactatgctttaccgt
gtcaaaaaaggtgtttgtgaccagagctttgggatacatgtagcagagcttgttgctttt
ccaaaacatgtaatagagagtgcaaaagagaaagctctggagctggaggagttccaaaac
attggagaacccgaggaatccgaaggagagccagcagtgaagagatgctatcgagaaaaa
caggaaggtgaaaaaataattcaggactttgtttatcaagtgaaagcattgccgttgaca
gacatgtctgaggaagacatcaaaaccaaactgaaacaactgaaagctggagtgctggca
aagaataacagttttgtaaatgaagttattgcccgaacaaaagccacttcatga
DBGET
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