Alligator mississippiensis (American alligator): 102562096
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Entry
102562096 CDS
T03087
Symbol
PRPF4
Name
(RefSeq) pre-mRNA processing factor 4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102562096 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102562096 (PRPF4)
Spliceosome [BR:
amj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102562096 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
102562096
NCBI-ProteinID:
XP_006268345
UniProt:
A0A151MEV8
LinkDB
All DBs
Position
Un
AA seq
522 aa
AA seq
DB search
MASARGPAVRATKTKISDESDAPPVKRPHIFYGSLEEKERERIAKGELGLLGKDGMKAAI
QAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPIT
LFGEGPAERRERLRNILSVVGTDALKKTKKDDDKSKKAKEEYQQTWYHEGPSSLKTARLW
IANYSLPRAVKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRPISYCHFS
PNSKLLATACWSGLCKLWSVPDCSLVHTLRGHNTNVGAIVFHPKATVSLDKKDVNLASCA
ADGSVKLWSLESDEPVADIEGHTMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILH
QEGHSKGVYDIAFHMDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGY
HIATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFLLTGAYDNTAKIWTHP
GWSPLKTLAGHEGKVMGLDISLDGQLMATCSYDRTFKLWMAE
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgcgcggggccctgcggtgcgggcaacaaaaaccaagatctcagacgagagt
gatgctcccccagtcaagagacctcatatcttctatggaagtttggaggagaaggaaagg
gagcgtattgccaaaggggagctggggctgctaggaaaagatgggatgaaagctgcaatt
caggctggcaacattaacattagcagtggtgaggtcttcgatcttgaagaccatatgagt
gagcgccaggcagaagtgttggctgaatttgagcgcaggaagcgtgctaggcaaatcaat
gtttccaccgatgactctgaagtcaaggcctgcttacgagctcttggggagcccatcaca
ctctttggagaagggcctgcagaaagaagagaaagattgagaaatatcctctcggtggtt
ggcactgatgccttaaaaaaaacgaagaaagatgacgacaagtctaagaaagccaaagaa
gagtatcagcaaacctggtaccatgaagggccaagcagtctgaaaacagctagattgtgg
atcgccaactactcactccccagggcagtgaagcggttggaagaagcccgactgctcaaa
gaaattcccgaggctacgaggacatcccagaggcaagaactgcacaagtccctaaggtca
ttgaataatttctgcagtcagattggagatgatcgccccatctcttactgccatttcagt
cccaattccaaactcctggctactgcttgttggagtgggctgtgcaaactctggtctgtg
cctgactgcagtctcgttcacactttacgagggcacaacaccaatgtgggagcaattgta
ttccatcccaaagctactgtctccttggacaagaaggatgtcaacttggcctcttgtgca
gctgatggttctgtcaaactctggagcctggaaagcgatgagccggtggcagatattgaa
ggtcataccatgagagtggcacgagtgatgtggcatccctctgggaggttcctgggcacc
acttgctatgatcactcctggcgcctgtgggacctggaagctcaggaagagattcttcat
caggaagggcacagcaaaggggtctatgacattgctttccacatggatggatctctcgct
gggactggtggccttgatgcctttggccgagtgtgggacttgcgcaccggacgctgtatc
atgttcttggagggtcacctgaaagagatctatgggatcaacttctccccaaatggatac
cacatagcaactggcagtggggacaacacttgcaaggtgtgggacctccgccagaggaag
tgcatttacactatacctgcccaccagaacctagtgacaggggtgaagtttgaacccaat
catgggaacttcctgctcacaggcgcctatgataacacagcaaaaatctggacgcatcca
ggctggtccccattgaaaacactggctggccatgaaggaaaagtaatgggactggatatc
tccttagatgggcagctcatggcaacatgctcgtatgataggaccttcaagctgtggatg
gcggagtag
DBGET
integrated database retrieval system
