Alligator mississippiensis (American alligator): 102562181
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Entry
102562181 CDS
T03087
Symbol
PCDH12
Name
(RefSeq) protocadherin 12
KO
K16499
protocadherin delta 2
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amj04515
]
102562181 (PCDH12)
Cell adhesion molecules [BR:
amj04515
]
Cadherins
Protocadherins
102562181 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Cadherin_C_2
ECSCR
Tmemb_9
DUF6249
FeoB_associated
DUF4446
Motif
Other DBs
NCBI-GeneID:
102562181
NCBI-ProteinID:
XP_014464377
LinkDB
All DBs
Position
Un
AA seq
1147 aa
AA seq
DB search
MLLLSPFMLQFTALWWHFFLSVGCQAVTLFRVKYEVLEEVANGTVIGNLLECFGLWERSV
DTFQLFQFPEEFPFHVGSEDGLLSTAGRLDREQLCRHNDPCLVSFTVLTAKHFALIHVEV
QVLDINDHGPQFPKAELELEMSENASLQTRIPLDQAQDPDTSTNALFSYSLSPSDHFALD
VISGSDGTKHAELVVVKEVDRELHSCFDLVLTASDHGEPPKSGTTLVRVIVLDSNDNSPA
VFAESSLTVEIGEDALPGTLLITVTATDSDQGPNGEIEYLLSKHTTLEVLHMFSIDARTG
NIVLRHPLDFEKIPTYELDVQARDLGANPTPAHCKIFIKVLDVNDNAPDVHITWVSWVPV
LSEALPNDSFVALVTTSDPDSGNNGQVHCYLSQGYEHFRLKRTNKYSYILLTNATLDRER
WSEYNLTLLIQDQGILPLAVEKYLTIYISDINDNPPLFERRTYNVSIAENNMTPSFLVTV
RANDADLDLNGKITYSIQDSLVSDLVSVDSNTGEIFALRAFDHEQMTSLEFLVTAEDGGY
PKLASNVSVRVNLLDKNDNSPVVIQPALVEGRAEITILVNAETGCLWTSLGTHSPAKASV
TSMILKPNSSTHLLFTIVASDADSGLNGDLHYNILSGNDDGLFVLDPLSGQVFINSSNIS
SLIGNELELRILVNDQGNLPLQVEALVLLIFKNHSAQGSWRLSPSMVIAICLIVLLVIFF
IILALIVSLRKREKKEKMAYNCREAEQAHREQQLKKPHRQIQKTDIYLIPVLRNRQDVHC
EAEQPCSCKEALVKETAWNDSQQTPFHLTPTLYRTLRSQGNQKDSAEQKDAFNFPATQRR
PLYSHKLRHSSEKNSSFQISEPYTKSLVKPLPRSMGNQNSDFLMPTNPPLDMTLRKQKFS
EPDAGLSEAQPHQHLLRSLVRLSLVAFSEQNSTGEFVLDSPPVQQISQLLSLLHQGQFQP
KPSHRGNKYTSKNDSRNAGLDADCLSIKDSGRGKNEVEYQDSENGFDLSMKQLMAEELES
LLEPHAGMTLKRLTAVDPEWMARLSLPLANSYKDNVFSPDSLHSSRNQEFIVQDKPRTFK
TFGKAIGYDSNAPGTRLTSTFLSEMSTLFEMILAQKVHVHAESNSELLQQLNACGKPLGL
SGDTPAL
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgctatcgccctttatgcttcaatttacagcattgtggtggcacttttttctc
tctgtgggttgccaggctgtgaccctattcagggtgaaatatgaagtgttagaagaagtg
gcaaatggaacagtgataggaaatttactcgagtgttttggtttatgggagagaagtgtg
gacactttccaactgtttcagttccctgaggaattcccttttcatgttggatctgaagat
ggcttgctcagcactgcagggcgactggacagagagcaactttgcaggcacaatgatcca
tgcttggtctcttttactgtattaactgctaaacacttcgctctaattcatgtggaggtt
caagtcttagatatcaatgaccatgggccccaatttccaaaggctgaattggagctagag
atgtcagaaaatgcatctttacaaacacgaatacctttggatcaagcccaagacccagac
actagtaccaatgccctcttctcttactcactgtctcccagtgaccactttgctttggat
gtcatctctggatctgatggaactaagcatgcagaacttgttgttgttaaagaagtggac
agagaactccattcttgttttgatcttgtactgactgcttctgatcacggagaaccacca
aaatcaggtactaccttagttagggtcattgttctagactccaatgataacagtcctgct
gtttttgcggagagttctttgacagttgaaatcggggaagatgctttgcctgggactctt
cttataacagttacagccacagactctgatcagggtcctaatggagaaatagaatattta
ttaagtaagcatactacactggaagtattgcatatgttcagcattgatgccaggacaggc
aatattgttttgaggcatccattggactttgaaaaaattcctacctatgaattggatgta
caggccagggatctaggagccaatcctaccccagcacactgcaagatcttcatcaaggtc
cttgatgtcaatgacaatgctccagatgtccacatcacatgggtttcctgggtgccagtg
ttatctgaagctcttcctaatgacagctttgttgctttggtgacaacaagtgatcctgat
tcaggaaacaatggacaggtacactgctaccttagtcaaggatatgagcatttcagattg
aaaaggactaacaaatatagttatatactgctgaccaatgccaccttggacagggagaga
tggtctgaatataacttgactttactgattcaggaccaggggatcctccccttagctgtg
gagaagtatctcactatttacatcagtgatattaatgacaacccacccttatttgaaagg
cgtacatacaacgtctccattgctgagaacaatatgactccttcatttttggttactgtc
agggccaatgatgctgacttagatttaaatggaaaaataacttatagcatccaggactcc
cttgtttcagatttggtatctgttgattctaacaccggtgagatctttgccctgagagct
tttgatcatgagcaaatgaccagtttggaattccttgtgacagcagaagatggaggttat
cccaaactggcatctaatgtctctgtcagggttaatttgcttgataagaatgataattcc
ccagtggtcatacagccagcactggtagaaggcagagcagagatcaccattctagtcaat
gcagaaactggatgcctttggacatccttagggactcacagccccgcaaaggcatcagta
accagcatgatactgaaacccaattcaagtactcacttgcttttcaccatagttgccagt
gatgctgactccggcctgaacggtgacctccattataacattttgagtggcaatgatgat
ggtctgtttgtccttgatccactgtcagggcaggtatttatcaacagcagcaacatcagc
agcctcattggaaatgaattagagctaagaattttagtgaatgatcaagggaatttacca
ctgcaggtagaagctcttgtgctgttaattttcaaaaatcactcagcccaggggtcttgg
aggctgagtccatccatggttattgctatctgcctcattgttttgctagtcatttttttt
attattttggccttaattgtgtctttacgtaaaagagagaagaaagagaaaatggcttac
aactgcagggaagcagaacaagcccacagagagcagcagctcaagaagccccacagacag
attcagaagacagacatatatttaattcctgtgctcagaaataggcaagatgtgcattgt
gaggctgagcaaccttgctcctgtaaagaggctttggtgaaggaaactgcatggaatgat
tcacagcagactccatttcacttaaccccaacactttacagaacccttagaagccaaggg
aaccagaaagattcagctgaacagaaagatgccttcaatttccctgcaacacagcgcagg
cccctctactctcataaactgagacattcatcagaaaagaactcaagctttcaaatttca
gaaccctataccaagagcctagtgaagccactaccaaggtctatgggaaatcagaactct
gactttttgatgccgactaatcctcctttggacatgactctgagaaagcaaaaattttct
gagccagatgcagggctttcagaggctcaaccccatcagcacctcctaaggagcctggtc
cggctgtctctggtagcattttcagagcagaactccacaggagaatttgttctggattca
cctcctgttcagcaaatctctcagctgctgtcactgttgcaccagggccagtttcagcct
aaaccaagtcacaggggaaataaatatacgtccaagaatgacagcaggaatgcagggctg
gatgctgattgcctgagtataaaggacagtggccgtggaaaaaatgaggtagagtatcag
gattcagagaatggatttgatctctccatgaagcagctgatggcagaagaacttgagagc
ctgctagagccccatgcagggatgacccttaaaaggctgacagcagtagatccagagtgg
atggctcggctctctctgccacttgctaatagctacaaggacaatgttttctcccctgat
tctctgcactcgtctcggaaccaggaattcatagtacaggacaaaccaagaaccttcaag
acatttggcaaagctattggatatgactcgaatgcacctgggacaagactgaccagcacc
tttctttcagaaatgagtacactttttgaaatgatcttggctcagaaagtccatgtccat
gctgaatcaaactctgagcttctgcagcaattgaatgcatgtggcaagcccttgggactg
agtggtgatactcctgctctgtag
DBGET
integrated database retrieval system
