Alligator mississippiensis (American alligator): 102562255
Help
Entry
102562255 CDS
T03087
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specific factor 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102562255 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102562255 (CPSF2)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102562255 (CPSF2)
U7-dependent histone pre-mRNA processing factors
102562255 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
102562255
NCBI-ProteinID:
XP_006269222
UniProt:
A0A151P9B6
LinkDB
All DBs
Position
Un
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLTRVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEDME
MQVDMPSSDSSAIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgaccaccctgtccggggtgcaggaggagtccgcgctctgc
tacctgctgcaggtcgacgagttccgcttcctcctggactgcggctgggacgagaacttc
tcaatggacatcatcgactccctcaggaaacacgtacaccaagttgatgcagtgctactt
tctcaccccgatcctctgcatcttggtgctcttccatatgcagttgggaagatgggttta
aattgtgctatctatgcaactattcctgtatataaaatgggccagatgtttatgtatgat
ctctatcagtctcgccacaatacagaagatttcaccctctttacactggatgatgtagat
gcagcctttgataaaattcagcaactaaagttctctcagatagtgaacttgaaaggcaaa
ggtcatggtctgtccatcacgccattgccagctggccacatgataggaggaaccatttgg
aagattgtcaaagatggagaagaggaaattgtttatgctgttgacttcaaccacaagagg
gagatacatctgaatggttgctccctggagatgttgagtaggccttcactgcttatcacg
gactcctttaatgctacatatgtacaacccagacggaagcaaagagatgaacaattgcta
actaatgtcttggaaacattgcggggtgatggaaacgtgctaatagctgtggatacagct
ggcagagttctggaacttgcccaacttcttgatcaaatttggagaacaaaagatgcagga
ttaggagtttactctctagcacttctgaataatgtcagctataatgtagtggagttttct
aaatcacaggttgaatggatgagtgacaaattgatgagatgttttgaagacaagagaaat
aatccgttccagttccgtcatctctctttatgtcatagtctttctgatctgactcgagtg
ccaagtccaaaagtcgtgcttgctagccaacctgatctggaatgtgggttttcaagagat
ctctttatccaatggtgtcaggattccaaaaactctatcattttaacttacagaacaact
ccagggaccctagcacgattcttgatagataatccttctgaaaaagttatagatattgag
ctgaggaaacgtgttaaacttgaagggaaggaactcgaggagtatctagaaaaggagaag
ctaaagaaagaagcagctaaaaaattagaacagtccaaagaggcagatattgattccagt
gatgaaagtgatgttgaagaggatattgatcagccatctgtacataaaaccaaacatgat
ttgatgatgaagggtgaaggtagccggaaaggaagcttcttcaaacaggccaagaagtcc
tatcctatgtttccagccccagaagagagaattaaatgggatgaatatggagagattatt
aagcctgaagatttcctagttccagagcttcaagcaacagaagaggagaaaagcaaatta
gagtctggtctgacaaatggagatgagccaatggaccaggatctgtcagatgttcctacc
aaatgtatttcagcaacagaatcgatggaaataaaagccagagttacatacatagattat
gaaggacgctcagatggagattccattaaaaaaatcattaaccaaatgaaaccacgacag
ttggtcattgtccatggaccacctgaggccagtcaagaccttgcagagtcctgcagagct
tttggtgggaaagacattaaagtttatatgcccaaacttcatgagacagtagatgcgacc
agtgagactcacatctatcaggtcaggctaaaggattctctagtcagttcccttcagttc
tgtaaagctaaagatgctgaactggcttggatagatggcgttctggacatgcgagtttca
aaagtggatacgggggtcattttggaagaaggggagctgagggaagatgaagacatggaa
atgcaagtggatatgccttcttcagactccagtgctattgcacagcaaaaagccatgaag
agtttgtttggtgatgatgataaagaaatgtgtgaggagagtgagatcattcctacattg
gaaccactgcccccacatgaggttcttggacatcaatctgtgttcatgaatgagccaagg
ctgtcagacttcaagcaagttcttctgcgagaaggaattcaagctgaatttgtcggcggt
gttcttgtatgcaacaacctagtggctgttcgcaggactgaaactgggcgcattggattg
gaaggctgtctctgccaggacttctatagaataagagaccttttatatgagcagtatgca
attgtttaa
DBGET
integrated database retrieval system
