Alligator mississippiensis (American alligator): 102562398
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Entry
102562398 CDS
T03087
Symbol
DDB1
Name
(RefSeq) damage specific DNA binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03420
Nucleotide excision repair
amj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102562398 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
102562398 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amj04121
]
102562398 (DDB1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102562398 (DDB1)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
102562398 (DDB1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
102562398 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102562398 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
102562398
NCBI-ProteinID:
XP_006264647
UniProt:
A0A151NYZ5
LinkDB
All DBs
Position
Un
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYAVSAEGLRPVKEVGMYGK
IAVMELFRRKGETKDLLFILTAKYNACILEYKQSGDSMDIITHAHGDVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDANGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLLGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSSQVVVAVGRALYYLEIHPQELSQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactatgtggtgacggcgcaaaagcccacggccgtcaatggctgcgtcacc
ggacacttcacgtcggccgaggacctgaacctgctgatcgccaagaacacgcggctggag
atctatgcggtcagcgccgaggggctgcggcccgtcaaggaggtgggcatgtacggcaag
atcgcagtcatggagctcttccgccgcaagggggagaccaaggacctgctgttcatcctg
acagccaagtacaatgcctgcatcctggagtacaagcagagtggggacagcatggacatc
atcacccatgcccacggcgatgtgcaggatcgtattggtcgtccctctgaaacgggtata
attggcatcattgacccagagtgccggatgattggactgcgactctatgatggccttttc
aaagtcatccctctggatcgtgacaacaaggagttaaaagcctttaacatccgtctggag
gagctgcaggtcatcgatgtcaagtttctctatggctgccaggcccctaccatctgcttt
gtttaccaggacccccaaggccgccatgtcaagacatacgaggtgtccttgagagagaag
gagtttaacaaaggtccctggaagcaagaaaacgtagaggctgaagcatccatggtgatt
gcagtgcctgagccttttggaggtgctatcatcattgggcaggagtccatcacataccac
aatggcgataaatatcttgctatagctcctcccatcatcaagcaaagtacaattgtatgc
cacaatcgtgtggatgccaacgggtcccgttacctcctgggggacatggagggtcgtctc
ttcatgctgcttctggagaaggaggaacagatggatggcacagtcaccttgaaggacctg
cgagtggagctgcttggggagacatccattgcggagtgtctgacctacctggacaatggt
gttgtttttgttggctctcggcttggggattcccagcttgtgaagctcaatgtggacagt
aatgaacagggctcctatgtggtggccatggagaccttcaccaacctgggccccattgtg
gacatgtgtgtggttgatctggagagacaaggccaagggcagttggtaacatgctctggt
gcctttaaggagggctccctgaggatcatcaggaatgggattgggatacatgagcatgcc
agcattgacctactggggattaaaggcttgtggcccctgaggtcagactctcatcgtgaa
actgataacaccttggtgctttcttttgttggccagacgagggttctgatgttaaatgga
gaggaagtggaggaaacagagttgacaggatttgtagatgatcaacagacctttttctgt
ggcaatgtggcccatcaacaactaatccagatcacatccgcttctgtgcggctggtaagc
caagagcccaaagccctggtgagtgaatggaaagagcccaatggaaagaacatcagcgtg
gcttcctgtaacagcagccaggtggtggtggctgtggggcgagcactgtattacctggag
atccatccgcaggagctcagccagataagctgcacagaaatggaacatgaagtggcatgc
ttggatatcacgcccttgggggacacaaacggcatgtcccctctgtgtgccattggcctg
tggactgacatctctgcccgtatcctaaagctgccttcgtttgagctgctgcacaaggag
atgctgggaggagagatcattccccgctccattctgatgaccacctttgagagcagtcat
taccttctttgtgccctgggtgacggggctcttttctactttgggctcagccttgagact
gggttgctgagtgaccgtaagaaggtgaccttaggtacccagcccactgtcctaaggacc
ttccgttctctctccaccaccaatgtctttgcctgctctgatcgccccaccgtgatctac
agcagcaaccacaaactggtcttctccaatgtcaacctcaaggaagtgaactacatgtgc
cccctcaactcggatgggtaccctgacagcctggcattagccaacaacagcaccctgaca
atcggcaccattgacgagatccagaagctgcatatccgtacagttcccctgtatgaatcc
cccaggaagatctgctaccaggaggtgtctcagtgctttggcgtactctcaagtcgcatt
gaggtacaggatgccagtgggggcaccactgcacttagacccagtgccagcacccaggcc
ctgtccagcagtgtcagctccagcaagctgttctctagcagcactgccccacatgagacc
tccttcggcgaggaggtggaagtgcacaatctactcatcatagaccagcacacctttgaa
gtgctgcatgctcatcagttcctgcagaatgaatatgccctaagcctggtgtcctgcaag
ctgggtaaggaccccaacacatatttcatcgtggggacagccatggtgtatcctgaggaa
gcggagcccaagcagggccgcattgttgtcttccattactctgatggaaagctgcagagt
ctggctgagaaggaagtgaaaggggctgtgtattctatggtggagttcaatggcaagctc
ttagccagcatcaacagcacggtccgtttgtatgagtggactgcagaaaaggagctgcgc
acagagtgtaaccattacaacaacatcatggctctctatgtgaagaccaagggggacttc
attctggttggagatctgatgcgctctgtcctgcttctagcctacaagccaatggaggga
aactttgaggagattgcccgagactttaatccaaactggatgagtgctgtagagatcttg
gacgatgacaactttttgggagcagagaacgcctttaacctgtttgtgtgccagaaggac
agtgctgccacaactgatgaggagcgccagcacttgcaggaggtggggctgttccacctg
ggggagttcgtcaatgttttctgccatggttccttggtcatgcagaacctcggcgagacg
tccacaccaacacagggctcagtgctttttggcacagtcaatgggatgattgggctggtg
acctcgctgtctgaaagctggtacaacctcctcctggatatgcagaacaggctcaataag
gtcattaagagcgtgggcaagattgagcactccttctggagatcatttcacactgaacgc
aagacggaaccagccacagggttcatcgatggtgacttgattgaaagcttcttggacatc
agccgccccaaaatgcaggaggttgtggcaaacctacagattgatgatggcagcggcatg
aagagggaggccaccgtggatgatctgatcaagattgtggaggagctgacccggatccat
tag
DBGET
integrated database retrieval system
