Alligator mississippiensis (American alligator): 102562562
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Entry
102562562 CDS
T03087
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102562562 (FOCAD)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102562562 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
102562562
NCBI-ProteinID:
XP_006266882
UniProt:
A0A151LZ91
LinkDB
All DBs
Position
Un
AA seq
1803 aa
AA seq
DB search
MSEDIKKRFEFPNTLIQTQAVGHLIAAVLREKVSSAKINQSSNQTPALNLLWEKCCSENV
TVWTACCESLVALVAQEHAEFSYVLNGALNLIPSARNVHGLIKTIGKLLQMQALTVGKNG
DEAVRNLYAIRNPPHPLISVLENRPVCWPVVLQQITVFFQQCQERAQSSCVCIMEPFLRY
LYCEPAQLREHAELRMGLLKILLQPRSPENKEAPSVLEHHILQLLCDLIPYFQIKDLPQI
TEVLLFLEDLFQSLLRYPVFWKLQLSQLCLQVLCFCEVCLDITGECSSLIGLLEQNVELL
QEDFPVEQTIIGLGLLLLQTPASQQKPILNLACKLLSCSETQKIPTTSLVLVMPALQILS
STAVEDCISQEDAGSTRQQLAINLLEIVQQEGMKDGKQLSSCKLVFPITSIYSSLYTTWK
ILELMKERSTVSDWLSSLKSLLPVITQVPTHAFLLLAYLLVQENGDSLRAVLSATTETAK
ADYSQVPNLIPVLMFKLGRPLEPVLYRDILYALPTLGVHKICVAQILRVIQVLGNTPKLR
AVSLRLMTSLWERQDRVYPELQRFMAMSDMPSLSVGKDIQWEKLIAKAASIRDICRQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDRR
PLILKTLNELFALVPSLTVNTNDYEKFKVQVVSFLWSHTQNKDPDVGISAYKSLSEFGSE
EHTILHLPEQARPEVDQPEEMDVTEEEEEKGMDLSVPGSAYIKLLSLTPSVILPAFEEFA
ASLVKQEMANMPRGVYHSALRRGATRSDQGKTVAGVPNFLLKMYERNKQPGLKPGLAAGM
LLCYDLPVHMGKDGKPINRFLVSRGRNFQQMLIALIHEVNIQPSEWYRSLLLPQSWLGFM
SRTYHAVLQGRQAELEMQLKHGKEDLEEVQYKQFTAWLWVRDMLTDVIKGASKESPVVKG
NCLLALTGLVVAVAKYESSLSSDIEGGPETQPDFLPTQHWISMVVETLLSIVNSRYRPQG
QVFPWFYQKSYSGENTASAIARSCAAIALSLLVPVFIVSCKEKVEEVLSMLTARLPGKPN
ADESQAVQIHMGLALGMFISRLCEEKVSDVSGQQMNLLLMKSLDALEACCFDTSLEYNTG
CILGVGLVLSLMSHTSQTESRVHISSSLQKLCNYLDESEDQSRTFQEILAYSIACSCISA
FSVRIIEAEEADKVMNKLRTLTENNQQTSGFALALGTIVHGLSVFGHGKAEDLSNRLLPA
WIKIVLAEGSPTMLRLAAVNGLVALVGSEGAMIQLKLDTIQSSQFQNKLNEVIRTLIQIV
SFSGQIALQTNAAWLLGHLHLSSLSSDQSRASVPPDFSYLPENSFIRAAIDYVIEGGKKG
PESIPPTLVKVALAPIALVGESYQYPPVNWGSILSPLMRLNFGEEIQHLCIELAVTQVQS
SQNAAMLLGMWVVPPLIFSLSMKTREYLFTSLPLWMKHIAEDKLQTFAEVFLVQHFEAKN
RAKNPKLCQSILQGLSQAMKLPTPAQYCWSCLCQATEKIFDFLPNEIQRSEMEMYIDIAK
CLSEMADTEIDRIAQISKKNIEKASFIKVYLVSQGRLPLMSLNDVIGNAIKCCWKEPITW
MLLHCFYHARIISHENTGVLKRMDWLLELMGYTRNVAYKSTSIQNVDLKEAVDFLLWIFA
ASVVAWADHAAPLLLGLSASWSPWKPKNASPELWADRIGKHPIDEFAVQEMFTLLPSSIQ
LLLAKEPWKEQTQKFIDWILNIMESPKEALSDSSGDLLKAALLALRFFPEFKKKAVWTKA
YGW
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagatatcaagaagcgatttgaatttcctaacacgctcattcagacacaggca
gtgggtcatctaattgctgcagtactaagagaaaaagtttcatcagccaagatcaatcag
tcctctaaccagacgcctgcattaaacttgctttgggagaaatgctgcagtgagaatgtg
actgtgtggacagcatgctgtgagagccttgtggcacttgtggcacaggaacatgcagag
ttcagttatgtccttaatggagctctcaatctgattccctctgccaggaatgtgcatggt
ttgataaaaacaattgggaaattgctacagatgcaagcccttaccgtgggaaaaaacgga
gatgaggctgttcgaaatttgtatgcaatcaggaaccctcctcatccactaatcagtgta
cttgaaaacagacctgtttgctggccagttgtcctgcagcagataacagtattcttccaa
cagtgccaagagagggcacagagttcatgtgtctgcataatggagccatttctaagatac
ctgtattgtgaaccagcccagttgcgggaacatgctgaactgcgaatgggtctacttaaa
atactacttcaaccgcgaagtccagagaacaaagaggcaccttctgtgctagaacaccat
attcttcagttactctgcgacttgattccatattttcagataaaagatttgccacaaatt
acagaagtattgttgtttctagaagacttattccagagtctactgcgctacccagtattt
tggaaactccagttgtcccagctttgtctgcaggttttatgcttctgtgaggtgtgtctg
gacataacgggggagtgttcatctttgattggcctactagaacagaatgttgagcttttg
caagaggattttcctgttgaacagaccataattggattaggattgcttttgctacagact
ccagcaagtcagcaaaaacccattttaaatctagcctgcaagctcctttcctgttcagaa
acacagaaaattccaaccacatcccttgtcttggtgatgccagcactgcagatcttatct
tctacagcagttgaggactgcatatcacaggaagatgctggctccactaggcaacagttg
gctataaatcttttggaaatagtacagcaggaaggcatgaaagatggaaagcaattgtca
tcctgcaagcttgtcttccctattaccagtatttacagttcattgtatacaacctggaag
atcttagagcttatgaaagagaggtctacagtgtctgattggctgtcttcccttaaatca
ctgctacctgttattactcaagtccccactcatgcttttcttctactggcttatctcttg
gttcaagaaaatggagacagtcttcgtgcagtactaagtgccactacagaaacagccaaa
gcagattactctcaggtcccaaatctaatcccagttttgatgtttaaactgggaaggcca
ctggagcctgtgctgtatcgcgatattttgtatgctttgcctactctgggtgtgcataag
atttgtgttgctcaaattctacgtgtaatacaggttctggggaacacaccaaagcttaga
gctgtttctttacgcctgatgacatctttatgggagagacaggatcgggtttacccagaa
ctgcagcggtttatggcaatgtctgacatgccctctttgtctgttggcaaggatattcag
tgggaaaagctaattgctaaagctgcgtctatcagagatatatgtagacagaggccctac
cagcatggagcagatatgttggctgcgatttcccaggtactgaatgaatgcacaaagcct
gatcaagctactcctgctgccttagtattacaaggtcttcatgcactttgccaggctgag
gtcgtttgtattcgttctacatggaacgcgctttcgccaaagctgagttgtgacaggcgt
ccgctcattttgaaaacactgaacgaactgtttgccttggttccctcattaacggtgaat
acaaatgactatgagaaatttaaagttcaagttgtcagcttcctttggagtcatactcag
aacaaggatcctgatgtaggaatttcagcatacaaatctctgtctgaatttggttctgag
gaacacaccatccttcatcttcctgaacaggcaagaccagaagttgatcagccagaagag
atggatgtcactgaagaggaagaagagaaggggatggacctttctgttcctggctctgct
tatatcaaacttttgtccctaacaccttctgtgattttaccagcatttgaagagtttgca
gcatcacttgtgaaacaagaaatggccaacatgccccgtggtgtttatcattctgcactg
agaagaggggccacacgctcagatcaagggaagactgtagcaggagttccaaacttcttg
ttgaaaatgtatgagaggaacaagcaaccaggtctgaagcctggcctggcagctggcatg
ttgttatgttatgatcttccagtccatatgggcaaagatggcaaacctattaatcgattt
ttggtcagtagggggcgcaatttccagcaaatgttaatagctctcattcatgaggttaac
atacagccttctgaatggtaccgctctctcctgctccctcagtcttggcttggatttatg
agcagaacataccatgcagttttacaggggagacaggcagagctggagatgcagttaaaa
catggaaaagaggatcttgaagaggtgcagtacaaacaatttacagcctggctctgggtc
agagacatgctgactgatgttatcaagggtgcttcaaaggagagccccgtggtgaaagga
aactgtctcttagctttaactggccttgtagttgctgtagcaaaatatgaaagcagcctg
tcctcagacattgaggggggaccagagactcagcctgattttcttcccacacagcactgg
atttccatggtggtagagacactccttagtattgtgaacagtcgctatcgtcctcaaggt
caagtcttcccatggttctaccagaaatcatattcaggggaaaacacagccagtgcgatt
gctcgctcctgcgcagccattgctttatctctcttggtgccagttttcattgtatcctgc
aaggagaaggttgaggaagtcctgagcatgctgactgccaggttacctgggaaaccaaat
gctgatgagtctcaagctgttcaaatccacatgggccttgctttggggatgtttatctcg
cgtttgtgtgaagaaaaagtcagtgatgtatctggccaacagatgaatctacttctaatg
aagtccctggatgcactggaagcttgctgctttgataccagtctagagtacaacactgga
tgcatcttgggagtaggacttgttctttcacttatgagtcacaccagccaaacagagtca
cgagttcacatctcttcctcactacaaaaactctgcaactacctggatgaaagtgaggat
caaagcagaacattccaggagatccttgcctattccattgcctgttcctgcatctctgct
ttcagtgttagaatcatagaagcagaggaagctgacaaggttatgaacaagttgcggact
ttaacagaaaataatcagcagacatctggttttgccttggcactgggtaccatagttcat
ggtttgtcagtctttggacatgggaaagcagaagacctgagcaacagactgttacctgct
tggataaagattgtacttgcagaggggtctcccacaatgctgcgcctggctgctgtgaat
gggttggttgcattggtgggttctgaaggagccatgatacagttgaaattggacactatt
cagtcttcccagtttcaaaataaacttaatgaagtcatcagaaccttgattcagattgtc
agtttttctggacagattgccctgcagacgaatgcagcctggcttttagggcaccttcat
ttatccagtttgtcctcagaccagagcagggcatctgttcctccagacttcagctacttg
cctgaaaacagctttattagggcagctattgattatgtcattgaaggaggcaagaaaggc
cctgaatccattccccctaccttggtgaaggtagccctggcacccattgctttagttgga
gaaagttaccagtatccacctgtgaattggggatcaattctttctcctttgatgagacta
aactttggtgaagagatacaacatctgtgtattgaacttgcagtgacccaggtccagtct
tcacaaaatgctgcaatgcttttggggatgtgggtagtaccccctctgatcttcagtctt
agtatgaaaaccagggaatatctttttacttctttgcctctgtggatgaaacacattgca
gaagacaaactgcaaacttttgctgaagtatttctggtacagcattttgaagcaaagaat
cgtgcaaaaaatccaaagctttgccaaagtatcctgcagggtctcagccaagctatgaaa
cttccaactcctgcccagtattgctggagctgtctgtgtcaggccactgagaaaatattt
gactttttaccaaatgagattcagagaagtgaaatggaaatgtatatagatatagcaaaa
tgcctgtcagaaatggctgatacagagattgaccgaattgcccaaatctctaagaaaaat
atagaaaaggcctctttcatcaaagtgtatctagtttctcaaggcaggttacctttgatg
agtttgaatgatgtgattggtaatgcaataaaatgctgctggaaagagcctattacatgg
atgttgttgcattgtttctaccatgcccgaatcataagccatgaaaacacaggagtgttg
aagagaatggactggttgttagaactgatgggctatactagaaatgttgcttacaagtca
acttctatacaaaatgtggatcttaaagaggctgtagatttcctgttgtggatattcgca
gcttctgtagttgcctgggctgaccatgctgcaccactactacttggtctcagtgccagc
tggtcaccgtggaaacccaaaaacgcatcaccagaattgtgggcagatcgaattggcaag
cacccgatcgatgaatttgctgtgcaggagatgtttactctccttccaagcagtattcaa
cttctgctagctaaagagccttggaaggaacaaacacagaagtttatcgactggattctt
aatataatggaaagtcctaaagaagcactatcggattcttccggagacctattaaaagct
gcacttctggctttgaggttttttccagaattcaaaaagaaagcagtgtggactaaggct
tatggttggtag
DBGET
integrated database retrieval system
