Alligator mississippiensis (American alligator): 102562671
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Entry
102562671 CDS
T03087
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102562671 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102562671 (PCF11)
03019 Messenger RNA biogenesis [BR:
amj03019
]
102562671 (PCF11)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102562671 (PCF11)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102562671 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
102562671
NCBI-ProteinID:
XP_019349123
LinkDB
All DBs
Position
Un
AA seq
1751 aa
AA seq
DB search
MTQRLEEEGAREPPPPFCACETETETAAAPSSLEDLTFNSKPHINMLTILAEENVPFAKD
IVSLIEAQIAKAPPSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRK
SLFKLRSTWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEP
STPTSGVTSSGVSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQ
LAVSLSVQQGASTMSPVPAPSKQHVCQTPQMSVKASPVQSERNRPSPIPQVHDIKLVNRD
PRLNRMAQHSSHAKEQSHRKEFLSTTTNQSDIKVNKPVPTEKQNASKQEKLKSNEKIQKK
ELDQAETKSKSPSPLKNKLSHTKDTKTPTCENMKLSEISKRDPRLKKHLQEKPDVKDDDA
KEKRKSIEKKEKEEHKTSEHRPIGSRNKVINGVVQKQDANTEDSEKQGGKPGRSSNRKRS
RSRSPKSRSPSAHSPKRRDRRSPKRRLRSLSPTSSTPKIGKLRQSGLKQSHAEEFTQTMR
EERNSNKRNVKQDVRDPRRLKKTQDERPQETVNQHSAKSTPEPKENVENWQGPKSSKRWK
SGWEESKNLQQSEEHQGLGKSPHQRHRENWAAGKGILSPRAPKLQHRLSVDANLQIPKEL
TSASKRELLKKANERLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTDEKCGVK
KKPLLSDAELTYYEHKAKLKRTQVQHAFPRLDLLDPDDILDYHFTDALLSGLECEQAKKR
AQFDRKEQFGERSRRHSPISGNRPFTDNLSPHESERRHDEQNSSKGTSSSKSFDPYDSWG
ESDECRDVFGQQGKCTPEFQKIDGEGFCKFDNPEDRQMLGQSGVREEPRSPFSERFKRSR
YEDPEKTAFTDSPGSRFGGIEVKQRITALMEDRPLFDGPSRPPASRGGGDGQASHFVDGP
SNTSNSRIDGPPAQASLRFEGPLGQVGAGGAPQFDGPLAQAGGGGGMRFDGPPGQLGSGL
RFEGPSGQVGGGGAIRFEGPLGQVGNALRFEGPTGPSVGSLRFEGPTGQPVGSLRFEGPR
GQPSGGLRFEGPHGQPMGPRVHPGAGLRFEGPHGQPMGPHSQPGGGLRFEGPHLQQLGPH
GQPAGGMRFEGPHSQPLGPHGQPGGGLRFEGPHGQPVGPHVQAGGSGLRFEGPHIQPGVG
PRFEGPSVQTGGGLRFEGPLGQAGPRFDGCHSSRFDGQPGQLSLLQRFEGLHGQPGPRFE
RAPGQQTPPRFEGLPGQQARFDTTIPQRFDGPQHQQASRFDMPLGLQGPRFENVANHPAS
RLETSPYGQTGPYSEHPNQTYNGPSHGMQFQRPEMFDGSQGPNFNGPAGPTAQNYPSLLN
RASGHYFDDKNLQGPQYGNFSNMPNSMSVGNAQQPHQVPVLSVPSGQHVPYGPGQQYLPV
RGQNPGGFVQNQADNHLGQLDVNELFSKLVSTGILKLSKTDSTSAQANETAPQPAPEEEE
DDQDQSEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDW
HYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAA
KEKEFQSVPAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQN
TSSFDCTPSPSKTPVENPLNIMLNIVKQETEEPCNSPTVTEPPVDTPAACTEESTPASID
IKTEPEEVESV
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaacggttggaggaagaaggagcccgcgagccgccgccgccattttgtgcgtgt
gagacggagacggagacggcggcggcgccgtcgtcgctggaggacctcaccttcaacagc
aagccgcacatcaacatgctgaccatcctggccgaggagaacgtgcccttcgccaaggac
atcgtctccctcatcgaggcgcaaatcgccaaggctcctccttcagagaagcttcctgtt
atgtatcttatggattccattgtcaagaacgttggaagagagtatcttactgcgtttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctctacatgggatgatattttccctttgaagaagctatatgcc
cttgatgtcagagtcaactcattagatcctgcttggcctattaaacctctacccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgcctgaggaacct
tctacacctacctctggagtcacttcgtctggtgtctcaactcctccagctgttcctgaa
atacagaagaatttgacacaagagcaactaataagacagcaactgcttgcaaagcaaaaa
cagttattagaacttcagcagaaaaaattagagctggagctagaacagactaaagcacaa
ttggcggtttctcttagtgttcagcaaggagcatctaccatgagtccagttccagcacct
tccaagcaacatgtgtgtcagactcctcagatgtcagttaaagcttcccctgtgcaatct
gaaaggaacagaccttctccaatccctcaagttcatgatattaaattagtgaacagagat
cctcgacttaataggatggctcagcattcctctcatgctaaagagcaaagtcataggaag
gaatttctgtcaaccacaacaaatcagtctgatatcaaggtcaataaacctgtgccaact
gaaaaacaaaacgcatcaaagcaagaaaagttaaaatcaaatgaaaaaatacagaaaaaa
gaacttgatcaggcagaaacaaaatctaaatcaccatcccctttgaaaaataaattatcc
catactaaagatactaaaactccaacatgcgaaaacatgaaattgtctgaaattagtaag
agagatccaagactaaaaaagcatcttcaggagaagccagatgttaaagatgatgacgca
aaagaaaagaggaaaagtatagagaaaaaagagaaagaggaacataagacatctgaacac
agacctattggtagtagaaataaagtaattaatggtgttgtacagaaacaagatgccaac
acggaagattcagaaaaacagggtggaaaacctggacgatccagtaataggaaaaggtca
cgatcacgctctcctaaatctcgatcaccatctgctcattctccaaagaggagagataga
cggtcacccaaaagaagactgaggagtctgtcccctacctcctcaactccaaaaattgga
aagcttcgtcagtcaggtcttaaacaatctcatgctgaggaatttactcaaaccatgaga
gaggaaagaaactctaataagagaaacgttaaacaagatgtgagagatccgaggagattg
aaaaaaactcaagatgagagaccacaggaaactgtaaatcagcattctgcaaaatccacc
ccagagccaaaggagaatgtggagaattggcaaggtcccaaatcaagcaaaaggtggaaa
tctggttgggaggaaagtaaaaacttacagcagagtgaagaacatcaaggacttggtaaa
tcaccacatcaaaggcatagggaaaattgggcagctggtaaaggaattttgtcacctcgc
gcaccaaaactgcagcatcgattgagtgtggatgccaatttgcagattcccaaagaattg
acttccgcaagcaagagagaattactcaaaaaagcaaatgaacgtctggcgtctggtgaa
ataacacaagatgagttcctggttgtggctcatcagattcgtcagttgttccagtatcag
gaaggaaagcacagatgcaatgtgtgggatagtcctacagatgaaaaatgtggcgtgaaa
aagaagccccttctttcagatgctgaattaacatactatgagcataaagctaaattgaaa
agaacacaagttcaacatgcatttccaaggcttgatttgttggatcctgatgatatttta
gactaccatttcacagacgcattgctttctggactggaatgcgagcaagcaaaaaaacga
gcacagtttgaccgaaaagagcaatttggagaaaggtcaagacggcattctccaatatct
ggtaatagacctttcactgataatctttcaccacatgaaagtgagcgaagacatgatgag
cagaattcctctaaaggaacaagcagttctaaaagctttgatccttatgatagctgggga
gaatcagatgaatgtagagatgtgtttgggcaacaagggaaatgtacaccagaattccag
aaaattgatggagagggattttgcaaatttgataatcctgaagacaggcaaatgcttgga
cagagtggtgttcgagaagaaccaagatctccgttcagtgaacgtttcaagagatctaga
tatgaagatccagagaaaacagcatttactgacagtcctgggtcaagatttggaggcatt
gaagtaaagcagagaataactgcattgatggaggacagacctctgtttgatgggccatct
agaccgcctgcttcaaggggaggcggagatggacaagcaagtcattttgttgatgggcca
tctaacacctcaaattctagaattgatgggccacctgcacaggcctctttgaggtttgaa
gggccactaggacaggttggtgctgggggtgcccctcagtttgatggaccgttagcacag
gcaggaggagggggtggcatgcggtttgatggaccaccaggacagctaggcagtggcctc
aggtttgaggggccctcagggcaggtaggtggagggggtgcaatcaggtttgaaggccct
cttgggcaggtagggaatgctttgaggtttgagggacctacgggcccatctgtgggtagt
ctcaggtttgagggccctacaggccagcctgtgggtagtctcaggtttgaggggcctcgt
ggtcagccatcaggtggtctcagatttgagggacctcatgggcaacctatgggccctcgt
gttcatccaggggctggtctcagattcgagggaccccatggtcaacctatgggacctcat
agtcaaccagggggtggcctcaggtttgagggaccacatttacaacaactggggccccat
ggtcaaccagcgggtggtatgcgatttgaaggaccacatagtcagcctttgggaccacat
ggtcaaccggggggtggtctcaggtttgaggggcctcatggtcagcctgtggggccacat
gttcaggcaggtgggagtggtctcaggtttgaagggccacatatccagccaggagttggt
cctagatttgagggaccttcagttcagactgggggtggacttaggtttgaaggtcctcta
ggtcaagccggtccaagatttgatggctgccattcgtccagatttgatggtcaacctggc
cagctgtctctcttgcaaagatttgaagggttacatggacaacctggcccacggtttgaa
agggcaccaggtcagcaaacacctcctcggtttgagggactgcctggtcaacaggcacga
tttgatacaacaatacctcaaagatttgatggccctcaacaccagcaggcttcaaggttt
gacatgcctcttggtctccaaggtccaaggtttgaaaatgtagcaaatcatcctgcctcc
agactagaaacatcaccttatgggcaaactggtccatacagtgaacatcccaatcagacc
tacaatggaccatcccatggcatgcaattccagagacctgaaatgtttgatggctctcaa
ggaccaaattttaatgggccagctggccctacagcacagaactaccccagtctgctcaac
agagcatctggacattacttcgatgacaagaatcttcagggtcctcaatatggaaacttc
agtaatatgcccaattcaatgtcagtaggaaatgctcaacaaccacatcaggttcctgtt
ctgtctgtaccttctggtcaacatgtaccatatggtccaggtcaacagtatttaccagta
cgtggacaaaatcctggaggttttgttcagaatcaagcagataatcaccttggtcagctt
gatgtaaatgaattattctctaaactggtttctacaggaatcctcaaattgtcaaaaact
gattccacatcagcacaagcaaatgaaactgctccgcagccagctcctgaggaggaggag
gatgaccaagaccagagcgaagatcaagatgtcccagaccttactaacttcacaattgaa
gaattgaaacagcgttatgatagcgtcataaatcggctgtacactggcattcagtgttat
tcttgtggaatgaggttcaccacttcacaaacagatgtttatgcagatcatttagactgg
cattatcgacaaaatcgtaccgaaaaagatgttagtagaaaggttactcacagaaggtgg
tactacagtttaacagattggatagaatttgaagaaatagctgatctagaggagcgtgca
aagagccagttttttgaaaaagcacatgaagaagttgtgttgaaaacacaggaagctgct
aaagagaaagagtttcagagtgtacctgctggaccagctggagcagatgagagctgtgaa
atttgtcaagagcaatttgaacaatattgggatgaggaagaagaagaatggcatctaaag
aatgccattagagtagatgaaaagatttaccatccatcatgttatgaagattaccagaat
acatcgtcatttgattgcacgccatctcccagcaagaccccagtagaaaatccattaaac
attatgttgaacattgtcaaacaagaaacagaggagccctgtaacagccctacagttaca
gaaccaccagtggacacacctgctgcctgtacagaagagagcacacctgcatctatagat
attaaaacagagcctgaagaggttgaatcagtttaa
DBGET
integrated database retrieval system
