Alligator mississippiensis (American alligator): 102562721
Help
Entry
102562721 CDS
T03087
Symbol
SF3B1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102562721 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102562721 (SF3B1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102562721 (SF3B1)
Spliceosome [BR:
amj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102562721 (SF3B1)
Complex B
102562721 (SF3B1)
Complex C
U2 SnRNP specific factors
102562721 (SF3B1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102562721 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
102562721
NCBI-ProteinID:
XP_006269224
UniProt:
A0A151N9Z7
LinkDB
All DBs
Position
Un
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaggga
aagaaggctgctcttgatgaagcacaaggagtgggcctcgattccacaggatattatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgagctagaagatgatgatgatgactactcctcaacgagtttgcttgggcagaagaag
ccagggtaccatgctccagtggcattacttaatgacataccacagtcaactgaacagtat
gatccctttgctgaacaccgtccacagaagattgcagatcgggaagatgaatacaagaaa
cataggcggatgatgatcatttcccctgagcgtcttgatccttttgcagatggagggaag
acacccgatcctaaaatgaatgctagaacatatatggatgttatgcgtgaacaacattta
acaaaagaagagagggaaattaggcagcaactagcagaaaaagctaaagctggagaactt
aaagtcgtcaatggagcctcatctcaaccaccttccaaacgcaaaaggcgatgggatcaa
acagctgaccagactcctggtgccacacctaaaaaattatccagttgggatcaagctgag
actcccggacatactccttctttacgatgggatgaaactcctggtcgtgcaaagggtagc
gagactcctggagctaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggatacacctggccatgccacaccaggtcatggaggt
gccacttctagtgcacgtaaaaatagatgggatgagacccccaaaacagaaagagatact
cctggacatggaagtggatgggctgagactcctcgtacagatcgaggtggtgattcaatt
ggtgaaacgccaactcctggagcaagtaaaaggaagtcacgttgggatgaaactcctgct
agccaaatgggtggtagcactcctgttttgacacctggtaaaacaccaattggcacacca
gctatgaacatggcaactcctactcctggtcacataatgagcatgactccagaacagttg
caggcatggaggtgggagagagaaatagatgagagaaatcggccactgtctgatgaagag
ctggatgctatgttcccagagggctataaggttctccctcctccggctggctatgtgcct
attcgtactccagctcgtaaacttacagcaactcccacgcctttgggtggtatgacgggg
ttccacatgcaaacagaagacaggaccatgaagagtgtcaatgaccaaccctctggaaat
cttccattcctaaaaccagatgatattcagtacttcgataaattgctggttgatgttgat
gaatcaactctcagtccagaagaacagaaagagagaaaaataatgaaattgcttttgaaa
ataaagaatggcacacctcccatgagaaaggctgccttgcgtcagattactgataaagct
cgtgaatttggagcaggtccgctgttcaatcagattctacctctgctgatgtcgccaacg
cttgaagatcaagaacgtcacttgcttgtcaaagttattgatagaatcctatacaaatta
gatgacttggtccgaccatatgtacataagattcttgtggtcattgagccacttctgatt
gatgaagattactatgctagagtggaaggcagagaaattatttcaaacttggccaaggct
gctggtctagctacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgttgttgcctctgctttaggcattccttcc
ctgttgcccttcctgaaagctgtatgtaagagcaaaaaatcctggcaggcaaggcatact
ggtatcaagattgtgcagcaaattgcaattcttatgggatgtgctatcttgcctcatctc
agaagtttggttgaaattattgaacatggtctggtggatgagcagcagaaagtacgtacc
atcagtgctttggctattgctgccttggctgaggcagctactccttatggtattgaatca
tttgactctgttctgaagcccttgtggaagggtatacgtcagcatagaggaaagggctta
gctgccttcttgaaagccattggttatcttattccacttatggacgctgagtatgccaac
tactataccagagaagtaatgctgatcctgatcagagagtttcagtctcctgatgaagaa
atgaaaaaaattgtgctgaaggtggtaaaacagtgttgtggtacagatggtgttgaagca
aactacattaaaacggagattctgccaccatttttcaaacacttttggcagcacagaatg
gcactggacagaagaaactacagacagttggttgataccacagtggagctggcaaacaaa
gttggagcagcagaaattatttccagaattgtggatgatctgaaagatgaagctgaacaa
tatagaaaaatggttatggaaactattgagaagataatgggaaatctaggtgcagcagat
attgaccataaactagaagaacaacttattgatggtatcttgtatgccttccaggaacag
actactgaggattctgtgatgttgaatggatttggcacagtggttaatgctcttggcaaa
cgagttaaaccatacttacctcagatctgcggtacagtgttgtggcgtttgaacaataag
tcggccaaagttagacagcaggctgctgacctaatctctcgtactgccgttgtcatgaag
acttgccaagaggaaaaactgatgggacacttgggtgttgtgttgtatgagtatctgggt
gaagaatatccagaagtcttgggcagcatactaggagcacttaaagccattgtgaatgta
ataggtatgcacaagatgacaccaccaattaaagacctcctgccaaggctcacgcctatc
ttgaagaacagacacgagaaagtacaggagaactgtattgacctagttggacgtattgca
gacaggggagcagaatatgtttctgcaagggaatggatgaggatctgttttgaactgctc
gagttgttaaaagctcacaaaaaggctatccgaagagccacagtaaacacttttggctat
attgcaaaagcaatcggacctcatgatgtactggctacattgctaaataacttgaaagta
caggaaagacagaacagagtatgtactacggtagcaattgctattgtggctgaaacatgc
tcacctttcacagtactgcctgcactgatgaatgaatacagggttccagaactgaatgtt
cagaatggtgtattaaaatctctttctttcctgtttgaatacattggcgagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagagaccttgta
cacagacaaacagccagtgcagttgtgcagcatatgtctcttggggtatatggatttggc
tgtgaagattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatca
cctcacgtcattcaggcagttatgggagcactggagggcctgagagttgctattggacca
tgtcgaatgttgcagtattgtttgcagggtttatttcaccctgcccggaaagtcagagat
gtttattggaagatttataattcaatctatattggctcacaggatgctttgatagcacat
tatccacgaatctacaatgacgagaaaaacacctacattcgttatgaacttgactacatc
ttataa
DBGET
integrated database retrieval system
