Alligator mississippiensis (American alligator): 102562768
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Entry
102562768 CDS
T03087
Symbol
PCDH1
Name
(RefSeq) protocadherin 1
KO
K16498
protocadherin delta 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102562768 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amj01009
]
102562768 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amj04515
]
102562768 (PCDH1)
Protein phosphatases and associated proteins [BR:
amj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102562768 (PCDH1)
Cell adhesion molecules [BR:
amj04515
]
Cadherins
Protocadherins
102562768 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
K319L-like_PKD
Mid2
MLANA
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
102562768
NCBI-ProteinID:
XP_006260134
UniProt:
A0A151PJM5
LinkDB
All DBs
Position
Un
AA seq
1225 aa
AA seq
DB search
MEKPEERRARGSRGAQRCPRPIPLWCRMKQLASCLGLWVLLQFPASSSGTRVVYKVQEEQ
PPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDREDLRECQHQFP
GDPCFLEFEVSITDLIMNSSPRLLEGQIEVLDVNDNTPNFASPVITLAIPENTNIGALFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQATDMVRRLLRLDRATGLITVQGPIDREDVNILKFSVLAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYIIEIVAVDSGNPPLSS
TNSLKVQVVDVNDNAPVFSQSFTEVTFPENNDLDDLVMEVSASDADSGSNAKLVYSLVMD
PSSKGIFSIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDKNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGDNARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDAGDPPRSAYVGVTINVLDENDNAPFITSPSNASYKHILP
HTSPGQQVSKVKAEDIDSGVNAELIYSITGGNPFELFQISPSSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTVLETLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVILVRYCRQREAKSGYQAGKKETKDLYAPKQGNKSSKS
KNKVKKSKSPKPPKPAEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPNRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSSQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcccgaggagcgccgcgctaggggcagccgcggagcacagcgctgtccgcgc
ccaatccccctgtggtgcagaatgaagcagctggcatcctgccttggcctatgggtcctc
cttcagttccctgcctcaagttctgggacacgtgtggtctacaaagtacaggaggagcaa
cccccgaacacactcattgggagcctagctgctgactatggctttccagatgtggggcac
ctctataagctggaagtgggggccccgtatctgcgtgtggatggcaagacgggggacatt
tacaccactgaaacttccatagaccgtgaggacctacgtgagtgccagcatcagttccca
ggggatccttgcttcctggagtttgaggtatccatcacagatctgataatgaacagcagt
ccacgccttctagagggtcagattgaggtactggatgtcaatgacaacacaccaaacttc
gcctcacctgttatcacactggccatccctgagaacaccaacattggggctctctttccc
atcccactggccatggaccgtgactcgggccccaatggtgtggcttcctatgagctcatg
gcagggcctgaagcacaggagctctttgggctacaagtggccgaggatcaggatgagaag
cagccacagctaattgtcatggggaacctggatcgagagcaatgggactcatatgacctg
accatcaaagtgcaagatgggggaaaccctccacgggcaagcagtgcccttctgcgcatc
actatcctggacatgaatgacaatgcacccaagtttgaaaaggccttgtatgaagcagag
ctctcagaaaacagtcctgttgggcattctgtccttcaggtgaaagccaacgactcggat
cagggcgccaatgccgaaattgactattcctttcaccaggccacagacatggtacgccgc
ctgctacgcctggatagagccacaggcctcatcactgtacaggggcccattgatcgggag
gatgttaacatcctcaagttctctgtcctggccaaggataaaggggctaatcccaagagt
gcccgtactcaggtagtggtgaccataaaggatatgaatgataatgccccctccattgag
atccgaggcattggtcttgtcacccaccaagacggcatggcaaacatttctgaggatgta
cctgtggagacggctgtggccctggtgcaggtgtctgaccgggatgaaggagaaaatgct
gtggttacctgtgtggttgctggtgatgttccattccagctgcgacaggccagtgagacg
ggcagtgacagcaagaagaagtacttcttgcaaaccaccacaccactggactatgagtca
gtgaaggagtacatcattgaaattgtggctgtggactcaggaaacccacccctctccagc
actaactcccttaaagtgcaggtggtggatgtaaatgacaatgcccctgtctttagccag
agcttcactgaagtgaccttccctgaaaacaatgaccttgatgacctagtgatggaggtg
agtgccagtgatgctgatagtggctctaatgccaagcttgtttactccttggtgatggat
ccttcttccaagggtatattttctattgatcctgattctggtgaaatccgagtgaagacg
gtgctggaccgggagcagagggagcgctatgagttcctggtggtggcagctgacaagggc
agtcccagcctcaagggtacagcatctgtggccattaatgtcatggacaaaaatgacaat
gaccccaagttcatgttaagtggctacaacttctcggtgatggagaacatgccacctttg
agcccagtaggtatggtgacagtgattgatgctgacaagggtgacaatgcccgcatccaa
ctttcagtagaacaagacaatggggactttgtgatccagaatggcactggcaccatcctc
tccagtatttcttttgaccgggagcaacagagcacatacaccttccgcctcaaggctgtg
gatgcaggggaccctcccagatccgcctatgtgggagtgactatcaatgtactggatgag
aacgacaatgccccttttatcacctccccttccaatgcctcttataaacacatcctgccc
cacaccagccctgggcaacaggtaagcaaggtcaaggctgaggacattgattctggggtc
aatgcagagctgatctatagcattactgggggcaacccttttgagctcttccagatttca
cctagcagtggggatatcacactggagaaagaaatcttacgcaagcatcatggcctgcac
cgcctagttgtgcgtgtcaatgataaaggcaagccctcgcgccatggaactgcactggtg
cacttttatgtcaatgagacgctggctaatcgcactgtgctggagaccctagtggggcac
agcctggacacacccctggacatagacattgctggggatcctgaatatgagcgcagcaag
caacgcagcaacatcctctttggagtcattgctggcattgtggctgtaacacttgtcatt
gtgctggtcattcttgtgcgctattgtcggcagcgggaggccaagagtggctaccaagca
ggcaaaaaagaaaccaaggacttgtatgcaccaaaacagggcaacaagagcagcaagagc
aagaacaaagtgaagaagagcaagtctcccaagccacccaagccagcagaggatgaagag
gagacagggctgcaaaaatccctcaagttcaacctcatgaatgactctgtaagtgacagc
ccccggatccatctacccctcaactatccacctgggagcccggacctggggcgccactac
cgctccaattcaccgctgccctccatccagctgcagcctcagtctccatctgcttccaaa
aaacaccaagtggtacaggatctgcctgctacaaacacctttgttggcactggggacaat
aactcaacgggctctgaacagtactcagactacagctaccgcaccaatccccagaaatat
accaacaagcagttacctcatcgccgagtgacattctctgcagccaatcaggcacaggac
ttgcaggacccctcccaacatagttattatgacagtgggctagaggagtcagagacaccc
agcagcaaatcatcatcagggcctcgcattgggcctctggctctgcctgaagatcactat
gagcgcaccacacccgacggtagcattggggagatggagcaccctgaaaatgatctccgg
cctctgcctgatgtagccatgactgggacctgtactcgggaatgcacagagttcggccac
tctgacacctgctggatgcctggccaatcctccccaaaccgcaggcccaagaacgccctc
aaactctctacctttgtgccttaccaagaccgagggagtcaagagcaagttgggaatggc
agccccagactctcagaagagcgcagcaccaaaatggccaacctccgtctgctccccacg
tacagtgccttctccaacagtagccatgagccctgcaaggactcccccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcatcccaaaccaccaag
agggagatctacctgtga
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