Alligator mississippiensis (American alligator): 102562807
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Entry
102562807 CDS
T03087
Symbol
TAF5L
Name
(RefSeq) TATA-box binding protein associated factor 5 like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102562807 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102562807 (TAF5L)
03036 Chromosome and associated proteins [BR:
amj03036
]
102562807 (TAF5L)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102562807 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
102562807 (TAF5L)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
102562807 (TAF5L)
STAGA complex
102562807 (TAF5L)
TFTC complex
102562807 (TAF5L)
SAGA complex
102562807 (TAF5L)
SLIK complex
102562807 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
Ge1_WD40
WD_LRWD1
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
102562807
NCBI-ProteinID:
XP_006269386
LinkDB
All DBs
Position
Un
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQHGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYASGSSLRNESNGLEPADMPASILQNEAALD
LLQDSIKRVRDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDVLDEEEEEDDNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGSSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNTPADGSSSELVGVYSGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacggaacagattcagatggcagtgtcctgctacctcaagcgtcgt
cagtatgtagactcagaaggtcccctaaaacaagggctgaggctgtgtcagaccgctgaa
gagatggcagctaatctcacagttcaatctgaatctggttgtgccaatgtagtgtctgca
gctccctgcctggcagaaccacagcaatatgaagtacagtttggacgactacgcaacttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccatcttaacatggtccaacacggcctaaagagcacagtggacagtttctac
agccgcttccatggcatgttcttgcagaatgccagtcagaaagatatcattgagcagttg
cagactaccatgactattcaagatatcctgtcgaacttcaagctccgggcttttctggac
aacaaatatgtcatccgtcttcaagaggacagctacaactaccttcttcgctacctccaa
agcgacaacaacaatgctctttgcaaagttcttaccttgcacattcacctggatgtgcag
cctgccaagaggacagactaccagctttatgccagtggcagctccttgcgcaatgagagt
aatggcctggaacctgccgacatgcctgcttccatcctgcagaacgaggcagcgctagac
ttactgcaggacagcattaagagggtcagggatggccccccttccttaaccaccatctgt
ttctatgccttctataacacagagcagttgctgaacacggccgagatctcaccggacagc
aagctgcttgctgctggatttgataattcttgtgtaaagctgtggagcctgcgatccagg
aagttaaaatctgagccacatcttgtagatgtgtcccgaatccgcctggcttgtgatgtt
ctggatgaggaggaggaagaggatgacaatgtaggcaccgaaatgaagatcctgagagga
cactgtggaccagtgtatagcacaaggttcctgtcagacagttcaggactcttatcttgt
tctgaagatatgtctatcagatactgggaccttggaagctttacaaacactgtgttgtac
caagggcacgcctaccctgtctgggatttggacatcagtccttgcagcctgtactttgcc
agtggttcccatgatcgcacagcgagactctggtcatttgatcggacgtacccactgcgc
atatatgcaggtcacttggcagacgtggactgtgtcaagttccaccccaattccaactac
ttggcaacaggctccacagacaaaactgtgaggctctggagtactcagcaagggagctct
gtgcgcctcttcacaggtcaccgcggccctgtgctagcactcgcattttctcccaatggt
aagtacctggcttcagcgggtgaagaccagcggttaaagctgtgggacctggcctctggc
acgctttacaaagagctgagagggcacacggacaacataaccagccttacctttagcccc
gacagtagtttgattgcctctgcatccatggataattctgttcgggtatgggacatccgg
aacacttactgcaacaccccagcagatggttcttcgagtgaactggttggtgtatatagt
ggacaaatgaataatgtactgagtgtacaatttatggcctgtaaccttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
DBGET
integrated database retrieval system
