Alligator mississippiensis (American alligator): 102562843
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Entry
102562843 CDS
T03087
Symbol
NID1
Name
(RefSeq) nidogen 1
KO
K06826
nidogen (entactin)
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102562843 (NID1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
amj04990
]
102562843 (NID1)
Domain-containing proteins not elsewhere classified [BR:
amj04990
]
EGF-like domain-containing proteins
cEGF domain-containing proteins
102562843 (NID1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
G2F
NIDO
EGF_3
Ldl_recept_b
cEGF
Thyroglobulin_1
EGF_CA
FXa_inhibition
EGF
SGL
Plasmod_Pvs28
Vgb_lyase
hEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
102562843
NCBI-ProteinID:
XP_006258247
LinkDB
All DBs
Position
Un
AA seq
1248 aa
AA seq
DB search
MGWGWGLLALLALAGPGRCGPPLLPFGSEGGDAELEAGDDVTSPALELSAPLHFYGSAVH
SVHVATNGIIGMNKPSKEEKYLGRFPISFGAIAPFMADLDTTSGHGKVFYREDSSPDVLQ
LVVSYIRRGFPEVTFDPISVVIVTWARVAPYRTPSEDAVLEDKRNTFQAVLASSDSSSYA
VFLYPEDGLQFWSTHSKNAKEKIPATVGFSQASTNYLLWEKLGSYNIVAHDEESIRSLYK
SSNIGKPGVWVFEIGSSSIILPAKVSSSPESLEYNDYEEYQEVTLQPSVSYHNSAETGQQ
HVTYDVHRKGGDQQHISYGVPQSATEEDLKSSVVTGIPPIESSLNRQADFVTGKTPPDPF
QVQRFYQQEPQVIDVEEFDETGIVFRYNTDVQQTCANNRHQCSIHAVCKDYSNGFCCSCI
AGYKGNGRQCVAEGSPQRVNGKVKGRIFVGNNPVPVVFENTDLHSYVVMNQGRAYTAIST
IPETLGYSLLPLASVGGIIGWMFSVEQQGYKNGFSLTGGEFTRQAEVIFLGNNEKLVIKQ
KFNGIDEHGHLTISTEMEGRIPEISFGASVHIEPYTELYHSSTSVITSSSTREYTVTPPE
RDGSSSSYTAAYQWRQTISFDECIHDDSHHPVSATQQLSVDSIFVLYNKDEQILRYAMSN
SIGPVSDGSADINRNPCYTNSHDCDSNAVCRPGTGNQFSCECSVGFQGDGRFCYDVNECS
EQPTVCGSNAVCNNQPGTYRCECVDGYQFSADGRSCVAIEHVINHCLAGTHNCDIPQRAQ
CTYVGGSSFICSCLSGFSGDGRACVDVDECQQNRCHPDAFCYNTPGSFRCQCKAGYRGDG
FQCVLGEVEKTKCQHERELALGSHIPRGSRPVGDFIPQCDEYGNYKPTQCHSSSGYCWCV
DSYGNEIDGTRSGPGIRPPCLSTAAPPVVIGPSVRPDSIPLPPGTHLLFAQSGKIEHVPL
EGNNMKKTDAKALLYVPDKVVIGVAYDCKDKMVYWTDISGPSISQVSLHGGEPTAIIKTD
LGSPEGIAIDHLGRNIFWTDSQLDRIEVARLDGNQRRVLFDSDLVNPRAIVADAVKGNLY
WTDWNRDAPKIETSYMDGTNRRILVKDDLGLPNGLTFDIYSSMLCWADAGTKKLECMNLS
QPGRRKVLEGILYPFSITSYGKNLYYTDWRRDAVVAVDRTVSKENDNFQPHKRSRLYGIT
TALAQCPPGHSYCEVNNGGCTHLCLTTPAGRSCRCPDNTVGVDCIEQN
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgggctggggctgggggctgctggcgctcctggcgctggccgggcccgggcgctgtggc
ccgccgctcctgcccttcgggtcggagggcggtgatgcggagctggaagccggggacgac
gtgacctcgccggccctggagctcagcgccccgctgcacttctacggctccgccgtccac
tccgtgcacgttgccactaatggaatcattggaatgaacaaaccgtcaaaagaagaaaaa
taccttggtcgattcccaataagttttggggctattgctccttttatggctgatctggac
actaccagtggacatgggaaggtgttttatagagaagattcatcccctgatgtcttgcag
cttgttgtcagctatatccgaagaggttttccggaggttacttttgatccgattagtgtt
gtcattgttacctgggcgcgtgtggctccttaccgtactcctagtgaagatgctgttctg
gaagacaagagaaacacattccaggctgttttagcctcttctgattccagttcctatgct
gttttcctttatccagaagatggtttgcagttctggagtacacactccaagaatgccaag
gaaaagattcctgctactgttggctttagtcaggcgtctacaaactacctactctgggaa
aaactgggatcctacaacatagttgctcatgatgaagagtccatcagaagcctgtacaaa
agcagcaatattggaaagcctggagtatgggtgtttgagattggtagctcatctatcatc
ctgcctgccaaagtcagcagcagtccagaaagtttggagtataatgactatgaagaatat
caagaggtgactttacaaccatctgtatcataccataactcagctgaaacaggccaacaa
catgtaacatatgatgttcacagaaaaggtggcgatcaacagcatatttcctatggagtt
cctcagtcagctacagaagaagacttgaagtcttcagttgtaactgggatccctccaata
gagtcctctctcaatcgtcaggcagatttcgtcactgggaaaacaccacctgacccgttt
caagtccagaggttctaccagcaggaaccccaagttatagatgtggaagagtttgatgaa
acagggattgtattccgctacaatacagatgtccaacagacctgtgctaacaaccgccat
cagtgctccattcatgctgtttgcaaagactattcaaatgggttttgttgcagttgcatt
gctggttacaaagggaatggcaggcaatgcgtagcagaaggttctcctcagcgagtcaat
gggaaagtcaaaggaagaatctttgttgggaataacccagtgccagttgtgtttgagaac
actgacctccattcctatgttgtgatgaatcaggggcgggcctacactgctatcagcaca
atcccagagacactgggttattctttgcttcccctagcctctgttggaggtatcatagga
tggatgttttctgtggaacagcaaggatataaaaacggattcagtcttactggtggtgag
tttacacgacaagctgaagttatcttccttggcaataatgagaagctggttatcaagcag
aagttcaacggaattgatgagcatggccatcttacaatcagcacagaaatggagggtaga
attcctgagatctcatttggtgcatcagttcacatagagccatacactgagctctatcat
tcttctacatctgtgatcacttcatcatctaccagggaatacacagtgacgccaccagaa
agagatggctcttcttccagctacactgctgcctaccagtggcgacagaccatctcattt
gatgaatgtatccatgatgactcgcatcatcctgtttctgcgacacagcagctatcagtg
gacagcatttttgtactgtataacaaagatgaacaaattctacgttatgctatgagcaac
tccattggcccagttagtgatggttctgctgatattaaccggaatccttgctacaccaat
agccatgattgtgatagcaacgcagtatgtcgcccaggaacaggaaaccagttctcctgt
gaatgttctgtaggcttccagggagatggacgtttttgttacgatgttaatgagtgctca
gagcaaccaactgtatgtggcagcaatgcagtctgtaataaccaaccgggaacttaccga
tgtgagtgtgttgatggctatcagttttcagctgatgggcggagttgtgtggcaatcgaa
catgtgataaaccattgcctggcaggcacgcacaactgtgatattcctcagcgtgcccag
tgtacatatgttggtgggtcttccttcatctgttcctgtctctctggcttctctggagat
ggacgtgcctgtgtagatgtagatgaatgtcaacagaaccgctgtcacccagatgctttc
tgctacaacactccagggtccttcagatgccagtgcaaggcaggttatcgcggggatggt
ttccagtgtgtgttaggagaagtggagaaaaccaaatgtcagcatgaacgagaactggct
ttgggctctcacatccccagagggtccagacctgttggtgattttatcccacagtgtgat
gaatatgggaattacaaaccaacccagtgccattccagctctgggtactgttggtgtgtg
gacagttatgggaatgagattgatggcacaagatctggtccaggaatccgacccccatgt
ctgagcacagctgctcctccagttgttattgggccctctgttcgaccagattcaattcct
ctgcccccaggaacacacttactctttgcccaaagtgggaagattgaacatgtcccactg
gaggggaataatatgaagaaaactgatgcaaaagctttgctatatgttccagataaagtt
gttattggagttgcgtatgactgcaaggacaagatggtttattggacagacatcagtggc
ccttccatcagtcaagtcagtctgcatggtggggagccaacagccatcatcaaaacagat
ttgggaagccctgaaggaatagcaatagaccatctaggtcgcaacatcttctggactgat
tcacaacttgatagaatagaagtggcccgtctggatggtaaccagcgtcgtgtgctgttt
gacagtgatttggtgaaccccagagctatcgtagcagatgctgtgaagggaaatctttac
tggacagattggaacagagatgctccaaaaattgaaacctcatacatggatggcacaaac
agaagaattcttgtaaaggatgatcttggattaccaaatgggctgacatttgacatttac
tcatcaatgctgtgctgggcagatgcaggcaccaagaagttggaatgtatgaacctcagt
cagcctggtcgacgaaaggtccttgaaggaatcctgtaccctttcagcattacaagctat
gggaagaatttgtattacacagactggaggagggatgctgttgtagctgtggatcgcaca
gtttcaaaagagaatgataacttccagccccacaaacgttcccgtctctatggaataact
acagccttggctcagtgcccaccaggacatagttattgcgaagtgaataatggaggctgt
actcatttatgcctgaccaccccagcaggccgctcttgccgctgtcctgacaacactgtt
ggagtggattgtatagaacaaaactga
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