Alligator mississippiensis (American alligator): 102563112
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Entry
102563112 CDS
T03087
Symbol
CIITA
Name
(RefSeq) class II major histocompatibility complex transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
amj01001
]
102563112 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
amj04054
]
102563112 (CIITA)
Enzymes [BR:
amj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102563112 (CIITA)
Protein kinases [BR:
amj01001
]
Serine/threonine kinases: Other
TAF1 family
102563112 (CIITA)
Pattern recognition receptors [BR:
amj04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102563112 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
LRR_8
LRR_9
NB-ARC
NPHP3_N
AAA_22
RsgA_GTPase
AAA_16
DUF7885
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
102563112
NCBI-ProteinID:
XP_019350134
LinkDB
All DBs
Position
Un
AA seq
1213 aa
AA seq
DB search
MNLFKEILPRVRKILSSATLSDAHALLSLMLKEDVISKEYYQTLLHEKDREDLARKISLT
FVEKWDLCLNTLVPLCYLKLCNNKHQSTTDGDSSLNRVLAGNKRQTMDSSILTENSFLDL
LHSDIDPVHLYTLLDAKSIENAESEVLTDPETDTINHDQFNNLDIFYTMENSESGEELYI
CSNTREAYARIAGLAEYVLKDPQERQMEDTFAGNLIFDEMATESTEGFTDVKMQKCHKRT
FLGTAENHSDTSEPKCRKTVDSPAVSTVNSSFLSVTLSGSPVNSSSFSLLHIPFSVTTIS
PTGRSFIAPGSIPNCLPVSAKGIQVIPGFPALPQQIISLPVRNGASDIIVCPGSSFPTET
SQLASPILPVNLSGVEISKGSQIPFVPSKQTQKRPKPVEAFCMSLKDYFCDVCKFMPMER
EVTLDQLYIEGALLQGQHETKGGKNIIKGIEKEPVIYDLEEKEKTALERNQIFQVPGGKE
LETKIIVLLGKAGMGKSILVQKICQDWSNGKFSQFEFVFLYECRRLSLPEKRYSLKDLLL
EVFVRPQEGKEEVFKYILQNPSKVLLIFDGFEELQDHDGFTHFPDCQSYKELYSMRELFA
GLFQKKILSGCTLLLTARPKDKLNQYLSKVDKIIEMVGFSPQQVELYISRYFEGLPYCND
AIKLIKDCQYLFSHCYSPVMCRFICFLCEMVFETGHKDLPSTLSTLLLKFFQEKLTPAQT
DGTTIKNQQNIVKLAQVAWSLGEHHQNALKSDLFPSKEIKEFALKHGFVLPFTFPKQSGN
KEEEFGSVFSNFIIQNFLGTLHLVLAEEIKDKSLTKYFSFPSRKKKFHNWLDLMPQFLAG
ILFLQDDPYLCSLSNKDVKKIITKKQKTLLKYIKRVQINNLCPERLLELFHCVYETQDRY
LLQNIALRLERELSFLGTPLTPPDVYVLRSILKRSKKEFALDLRNSAIDLQGMKDLVGLK
NVTSFRASLTDTIRLWESLEQTQEYELLKISIQKFAIDPFKAKTMRDISDLSGFVHMQEK
MIHCMQETSGCQIHEIPAIKNLKKLEFALGPACGPRGFLRLVEILVSLPSLQQLDLDALS
ENGIGDEGVKSLSQVFSQLTSLEVLNLSQNKITDLGAENLATALPSLSSLKTLSLYNNSI
CDAGAENIAKVLPAMASLRVLDVQYNKITDAGAQRLSGSLRKCPHMKSLAMWNPTIPYGV
LEHLQQLDSRIIL
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctagagtaaggaaaatcctttccagtgctacactt
tcagatgctcatgctttgctcagcctcatgctgaaggaagatgttatatccaaggaatat
taccagactttactccatgaaaaagacagagaagacctagctaggaagatctctctcacc
tttgtggaaaaatgggatttgtgtttgaacaccttggttcctctgtgttatttaaaactg
tgcaataataagcaccaaagtaccacagatggtgactcatctctaaacagggtcctagct
gggaacaaaagacaaaccatggattcttcaattttgacagaaaatagcttccttgatttg
ctgcacagtgacattgatccagtgcacctgtataccctgttagatgccaagtcaattgaa
aatgcggaaagtgaggtcttaacagatcctgaaactgacaccatcaaccatgatcagttc
aacaatttggatatattttatacaatggaaaacagtgagagtggggaagaattatatatc
tgttcaaacacaagagaagcttatgctagaatagctggtttagcggaatatgtgctcaaa
gatccacaggagaggcagatggaagacacatttgcaggaaacctcatttttgatgaaatg
gccactgaaagcacagagggatttacagatgtcaagatgcaaaaatgtcataaacgaaca
ttcttaggcactgcagaaaatcactctgatacttcggaacccaaatgcaggaaaacagtg
gattcccctgctgtgtctacagtgaacagtagtttcttatccgtgactttgagtggttct
ccagtgaactccagctccttctctctcctacacataccattttctgttaccactataagt
ccaacaggaagaagttttatagctcctggttccataccaaactgtctccctgttagtgct
aaagggattcaagtgattccaggttttccagcccttcctcagcagataattagtttgcct
gtaagaaacggtgcctctgatattatcgtgtgtccagggtcctccttccccactgaaacg
tcacagttggcatcacccattcttccagtcaatttatctggtgtagaaatttccaaggga
tcacaaattccttttgttccttccaaacaaactcagaagagaccaaagccagtggaagct
ttctgcatgtcactgaaggattatttctgtgatgtgtgcaagttcatgcccatggagcgt
gaagtaactctcgatcagctctacattgaaggggctcttttgcaaggtcaacatgaaaca
aagggtggaaagaatatcatcaagggcatagagaaagagccagttatatatgatttggaa
gagaaggaaaaaacggctttagaaagaaaccaaatatttcaagtcccaggaggaaaagaa
ctggaaaccaaaataattgtgttactgggaaaagcaggaatgggcaaaagtattcttgtt
caaaagatctgtcaagattggtccaatggcaagttttctcagtttgagtttgtctttttg
tacgaatgcagaagactgagcttgcctgagaagcgatacagcctgaaggatttgctactt
gaagtctttgtcagacctcaagagggaaaagaggaagtcttcaagtacatattgcaaaat
cccagtaaagtcctcctcatttttgatggttttgaagaactgcaggatcatgatggcttt
acacatttcccagactgccaatcttacaaggagctgtacagcatgagagagctatttgca
gggctcttccaaaagaagatactcagtggttgtactttattactaacagctagacccaaa
gacaagttgaatcagtacttatccaaagtggacaagataattgaaatggtagggttctct
ccacaacaggtagaattatacatatccagatactttgaaggattaccgtactgcaatgat
gcaattaaattgatcaaagattgtcagtatctattcagccattgttatagccctgtcatg
tgtagattcatttgttttctctgtgagatggtgtttgaaacgggacacaaagacttgccg
tcaacactgtctactctcttactaaaattctttcaagaaaaactgacacctgcacaaaca
gatgggacaaccataaaaaatcaacagaacattgtcaagctagctcaggtagcctggagt
cttggtgaacatcatcaaaatgctctgaagagtgatctctttccctcaaaagaaattaaa
gagtttgctctgaaacatggctttgtactaccatttacattcccaaagcaatcaggcaac
aaggaagaagaatttggcagtgtattctcaaatttcattatccaaaattttctgggtaca
cttcatctggtgcttgcagaagagatcaaggataaaagcctcacaaagtatttttcattc
ccatccaggaagaaaaagtttcataattggttagatttgatgcctcagtttttggctgga
atattattcctgcaggatgacccatacctctgttccctttcaaataaagatgtaaagaaa
atcataaccaagaaacaaaaaacactcttaaaatatattaaaagagtacagataaacaat
ctctgtccagaaaggctacttgagcttttccactgtgtttatgaaacacaagaccgctat
cttttgcagaatatagctttaagacttgaacgagagctgtcttttctgggcactccgctc
accccacctgatgtgtatgtgctacgttctattttaaaaaggtcaaaaaaggaatttgcc
ctggatctgaggaacagtgccattgatctacaggggatgaaagacctggttggcctgaag
aacgtgacgtcattcagagcttccctcactgatacgatcaggctctgggagtcattagag
caaacacaggaatatgagctgctgaagatttcaatacaaaaatttgcgattgatccattt
aaggctaaaacaatgagggatatcagtgatctttctggctttgtacacatgcaagagaaa
atgatccattgcatgcaagagacatctggttgccaaattcatgaaattcctgctatcaaa
aaccttaaaaaattagaatttgcgctgggtccagcatgtggtcctcggggattcttaagg
cttgttgaaattctcgtgtcacttccatctcttcagcagctagacttggatgctctgagt
gaaaatggaataggagatgaaggcgtaaaaagtctctctcaagtattttctcagctgaca
tcattagaagtattgaatttatcacagaataaaataacagatttgggtgcagagaaccta
gctacagctcttccttccttatcttcgttaaagacacttagtttgtataacaacagtatt
tgtgatgccggagcagaaaatattgcaaaagtacttcctgcaatggcatccttaagggtg
ctagatgttcagtataacaagataacagacgctggtgcccagagactgagtggcagcctg
agaaaatgtccccacatgaagagcctggcgatgtggaatcctactattccctatggagtt
cttgagcacctgcagcaactggattctagaattattttgtag
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integrated database retrieval system
