Alligator mississippiensis (American alligator): 102564547
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Entry
102564547 CDS
T03087
Symbol
UPF3B
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog B (yeast)
KO
K14328
regulator of nonsense transcripts 3
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03013
Nucleocytoplasmic transport
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102564547 (UPF3B)
03015 mRNA surveillance pathway
102564547 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102564547 (UPF3B)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102564547 (UPF3B)
mRNA cycle factors
P-body specific factors
102564547 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
102564547
NCBI-ProteinID:
XP_006277435
LinkDB
All DBs
Position
Un
AA seq
457 aa
AA seq
DB search
MKEDKENTRPKEKRGVPAPPPAPPPAPDADRPKDKKETLSKVVIRRLPPSLTKEQLEEHL
QPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIV
EFAPFQKAAKKKSKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKE
LIAKRTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLK
KVERFPEKERDKSKDEPKIKLLKKPEREERDLERKEKSKKLEKEREEKNIAALSTVSAKR
SDGEAKEEKAKKSEDECGKDYRDRDRDFERDREKLRRQDDDRRRQRERFDREKVFRRKEE
EVKKERDSFREKGKKSDLMDFASNPDKFERATKDDKKEDPIKRDRIRNKDRPAMQLYQPG
ARSRSRLCQYEDSAAKPSDQGTDKKQESETSNTKEEE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacaccaggcccaaggagaagcgcggggtgcccgcgccgccc
cccgcaccgccccccgcgcccgacgccgaccggcccaaggacaagaaggagacgctcagc
aaggttgtaattcggcgcttgcctcccagtctgaccaaggagcagctcgaggaacatctt
cagcctctgcctgaacatgactattttgaattctttgccaatgattccagtttgtatcct
cacatgttttcccgagcctacatcaactttaaaaaccaagaagacatagtactattcagg
gatcgttttgacggttatgtttttgttgatcacaaaggtcaggaatatgctgccatagtg
gaatttgcaccattccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaact
gggactattgacgatgacccagagtataagaagtttttggaaagttacagtgcagatgat
gaaaaattaacatctactcctgaaacgctactggaggaaatagaagcaagaaacaaagag
ctaatagcgaaaagaacaacgcctcttctgaacttcttgaaaaataagcagagactgaga
gaggaaaagagagaggagaggagaaggagagaactggaaagaaaaagacaaagagaagaa
gaaaggagaaagtggaaagaggaggagagaaggaaaagaaaagaagcagagaaattgaag
aaagtagaaagatttccagagaaagaaagggacaaatcaaaagatgaaccaaagattaag
ctacttaaaaagccggagagagaggaacgcgatttggagagaaaggaaaagtccaagaag
ctggaaaaagagagggaggaaaaaaacattgctgccctaagtactgtatcagccaaacga
tctgacggggaggcaaaagaggagaaggcaaaaaagtctgaagatgagtgtggaaaagac
tacagggaccgggatagagactttgagagagaccgagaaaaactgaggcgccaagatgat
gaccgccgcagacagagagagcgctttgatagagagaaggtttttagaagaaaagaggaa
gaggtgaagaaggagagagactcattcagagagaaaggaaagaaaagtgatcttatggac
ttcgcaagtaatcccgataaatttgagagagcaaccaaagatgacaaaaaagaggatcca
attaagagagatcggatcagaaacaaggatcgtccagcaatgcagctataccagccagga
gcccgaagccgaagtcgactttgtcagtatgaagacagtgctgcaaaaccttcagatcag
ggaacagataaaaaacaggaaagtgagaccagtaacacaaaagaggaggagtga
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