KEGG   Alligator mississippiensis (American alligator): 102565218
Entry
102565218         CDS       T03087                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting 4 homolog B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03250  Viral life cycle - HIV-1
amj04144  Endocytosis
amj04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    102565218 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    102565218 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    102565218 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:amj04131]
    102565218 (VPS4B)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102565218 (VPS4B)
Membrane trafficking [BR:amj04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    102565218 (VPS4B)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102565218 (VPS4B)
SSDB
Motif
Pfam: AAA MIT Vps4_C AAA_lid_3 TIP49 AAA_16 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_18 AAA_17 DUF815 AAA_2 AAA_33 nSTAND3 RNA_helicase AAA_24 PhoH AAA_7 USP8_dimer Mg_chelatase AAA_28 Parvo_NS1 NACHT ResIII bpMoxR KAP_NTPase
Other DBs
NCBI-GeneID: 102565218
NCBI-ProteinID: XP_019345879
LinkDB
Position
Un
AA seq 546 aa
MAGTNSNLQKAIDLASKAAQEDKAGNYEEAFHLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKAAPKPVKESGPTDDKGNESDGEGETGDPEKKKLQNQLQG
AIVMERPNVKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY
LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS
RSENESEAARRIKTEFLVQMQGVGADNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
DHARAAMFRLHLGTTPNELTESDYRELGKRTDGYSGADISIIVRDALMQPVRKVQSATHF
KKVKGPSRSNPDVLVDFLTPCSPGDPEAIEMTWMEVPGDKLFEPHVSMADMLRSLANTKP
TVNEQDLDCGKGSNAELCIITSTQVTFHYLRFSSSSTLLEPNLKADFPYIFFYFLFYFLV
PSMFQELLIDYLGKELLTMTVRAWFVCQLFHYKYQFMYLAAIIPIKWQVLAERMTKATLV
KTCYGS
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggccggcacaaactccaacctacagaaagcaatagaccttgctagcaaggcggcacaa
gaagacaaagcaggaaactatgaggaagcattccacttgtaccagcatgctgtgcagtat
tttctccacgtggttaaatatgaagcacaaggtgataaagcaaagcagagtatcagagca
aaatgtacagaatatctggacagagcagaaaaactgaaggaatatctgaaaaagaaagaa
aaggctgcaccaaaaccagtgaaagagtctggtccaactgatgataaagggaatgaaagt
gatggggaaggagagacgggtgatcctgaaaaaaagaaactacagaaccagcttcaaggt
gcgattgttatggagcgaccaaatgtaaagtggaatgatgttgctggtcttgaaggagcc
aaagaagcactcaaagaggcagtgatattgcccattaaatttcctcatctattcacagga
aaaagaacaccttggagaggaattcttctttttggaccacctggtacaggaaaatcttac
ttggcaaaagctgtggcaacagaagccaacaactccactttcttctcaatatcttcttct
gacctagtctctaaatggttaggagagagtgaaaaattagtgaaaaacttgtttcagctt
gccagagaaaacaagccttccattatcttcattgatgaaatagattctctgtgtgggtca
agaagtgaaaatgaaagtgaggctgctagacggattaaaacagagttccttgttcagatg
caaggggttggagcagacaatgaaggaatcctggttttaggagctacaaacataccttgg
gttctggattcagctatcaggagaaggtttgagaagcgtatttatattcctttgcctgaa
gaccatgccagggctgcaatgttcaggcttcatcttgggaccactccaaacgagctgaca
gaatcagattatcgagagcttggaaagagaactgatggctattcaggtgctgatataagc
atcattgtacgtgatgcactgatgcagcctgttaggaaagtgcaatcggctactcacttt
aaaaaagtaaaaggaccatcacggtctaatccagatgttttggtagatttccttacccca
tgctctccaggtgatcctgaagccattgaaatgacatggatggaagtcccaggggataag
ctatttgagcctcatgtttccatggctgatatgctcaggtcattagctaatacaaaacca
acagtaaatgaacaggatctagattgtgggaaaggttctaatgctgagctttgtattatc
acttctactcaagttactttccactacttaagattttcatccagttccaccctgctggaa
ccgaatctaaaagcagatttcccctatattttcttctattttctcttctacttccttgtt
cccagtatgttccaggaacttttaatagactatctagggaaggaacttctcaccatgact
gtcagagcatggtttgtctgtcagcttttccattacaagtaccagttcatgtacttggca
gctataattcccataaagtggcaagttcttgcagagaggatgacaaaggccacactagtg
aaaacttgctatggctcttaa

DBGET integrated database retrieval system