Alligator mississippiensis (American alligator): 102565588
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Entry
102565588 CDS
T03087
Symbol
POLR1B
Name
(RefSeq) RNA polymerase I subunit B
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102565588 (POLR1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102565588 (POLR1B)
Enzymes [BR:
amj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102565588 (POLR1B)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102565588 (POLR1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF4743
DUF1186
Motif
Other DBs
NCBI-GeneID:
102565588
NCBI-ProteinID:
XP_006263161
LinkDB
All DBs
Position
Un
AA seq
1050 aa
AA seq
DB search
MVPKASICKELKVYPAECRGRRSTYRGKLTADISWSVNGIPKGIIKQPLGYVPIMVKSKL
CNLYNLPPRALIEHHEEEEEMGGYFIINGIEKVIRLLIMPRRNFPIAMVRPKWKSRGPGY
TQYGISMHCVRDEHTAINMNLHYLENGTVMLNFIFQKELFFLPLGFALKALVGFSDFQIF
QELIKGREGNSFYESCISQMLRMVMEEGCITQKQVLSYLGKCFRVKLNLPEWYSNEQTAE
FLLSHCICIHLKTKVDKFYLLCLMTRKLFAFAKEECMEENPDSLMNQEVLTPGQLYLMFL
KERMEAWLLSIKLALNKRAQKTNITINSENLMKLFSMGIDVTRPFEYLLATGNLRSKTGL
GLLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDG
EPCGLMNHMTAVCEIVTQSASTLYLPPLLCSLGVTPVDGTPSQTYAECYPVVVDGSLVGW
VEKDLAPELADTLRRFKVLQEKKIPAWTEVVLVPMTGKPSLYPGLFIFTTPCRMVRPVRN
LALGKEELIGTLEQVFMNIAVLEDEIMPGVTTHQELFPHSMLSVVANFIPFSDHNQSPRN
MYQCQMGKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDSYPVGTNAVVAV
ISYTGYDMEDAMIVSKASWERGFAHGSVYKTESIDLTEKIKQGDDTLVFGIKANNPKVMQ
KLDADGLPYIGSILQYGDPYYSYLNLNTGESFIVYYKSKESCIVDNIKVCSNDSGSGKFK
TVCITVRIPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMT
IGMLIESMAGKSAALHGLCHDATPFTFSEKNSALEYFGRMLKAAGYNYYGTERMYSGISG
VELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDAL
LAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSATRNRKYCCTVCNQSD
TIDTVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccaaggccagcatctgcaaggagctgaaggtgtacccggccgagtgcaggggg
cgccgaagcacctaccgcggcaagctgactgctgacatcagctggtcagtgaatggaatt
ccaaaagggattattaagcagcctttgggatatgttccaattatggtgaagtctaaactt
tgcaatttgtataatcttcctcccagagccttgattgaacatcatgaggaagaagaggag
atgggaggctattttataataaatggtatagaaaaagttattagattgttgattatgcct
aggcgaaactttcctattgcaatggtaaggcccaaatggaagagcagaggccctggttat
acacagtatggtatatctatgcattgtgtcagagacgagcacactgcaataaatatgaac
cttcactatctagaaaatggtacggtcatgctgaacttcatttttcagaaagagctgttc
ttcttacctttgggatttgctctgaaggcattagttggtttctcagatttccagattttt
caggagctgattaaaggtcgagaaggcaattccttctatgagagctgcatttctcagatg
ctgagaatggtgatggaagaagggtgtatcactcagaaacaggtcctcagctatctgggg
aaatgcttcagagtaaaacttaaccttcctgagtggtattcaaacgaacaaacagccgaa
tttcttttgagtcactgcatctgcatacacttaaaaaccaaagttgacaagttctactta
ctttgtcttatgacccgcaagctgtttgctttcgcgaaagaagaatgcatggaggagaat
ccagacagcctcatgaatcaggaggtgctcacacctggacagctttacctcatgttccta
aaggagaggatggaagcatggttgctttctattaaattagccttaaacaagagagctcag
aagaccaatataactataaattcagaaaatttgatgaagctattcagtatgggaatagat
gtaacaaggccatttgagtatctccttgctactggtaacctacgatctaaaacaggtcta
ggcctgcttcaagattcaggtctgtgcgttgtagcagacaaactgaattttattcgctac
ctctcccacttccgctgcgtacacagaggtgctgcatttgccaagatgagaactaccaca
gtgcgcaaactgctgccagagtcctggggattcctgtgccctgtgcacacacctgatgga
gagccctgcggcctgatgaaccatatgacagctgtctgtgaaatagtgacacagtcagcc
tctacactgtacctgccacctttgctgtgctcattgggtgttaccccagttgatgggact
ccaagccaaacttatgcagagtgttacccagttgtagtggatggttccttggtgggctgg
gtagagaaagatttggctcctgaacttgcagatacccttcggcgctttaaggtgttgcaa
gaaaagaaaattccagcatggacagaagtggttcttgttccaatgacaggaaaaccaagt
ctatatccaggattattcatctttactaccccttgcaggatggtacggcctgtgagaaac
ttggccttgggaaaggaagaattgattggtactctggaacaggtcttcatgaacattgct
gtccttgaggatgagattatgcctggagtgactacccatcaagagctctttcctcacagc
atgctgagtgtagtcgccaacttcattcctttctcggatcataaccagagtccaagaaac
atgtatcaatgtcagatggggaagcaaactatgggatttccacttcttacttatcgggac
cgctcagataataagctgtaccgacttcagacccctcaaagccctttggtacggccatac
atgtatgattactatgacatggacagctatccagttggtaccaatgcagtcgttgctgtc
atttcctacacaggctatgacatggaagatgcaatgattgtgagtaaggcttcatgggag
agaggatttgcacatggaagtgtttacaagacagagagcatagacctcactgaaaaaatc
aaacaaggagatgacactctggtgttcggaatcaaggccaataatccaaaggttatgcag
aagttggatgcagatgggctgccatacattggatccattctgcagtacggggatccttac
tacagctaccttaacctcaacacaggggagagtttcatcgtttattataagagtaaggaa
agctgcattgtggataacatcaaagtgtgcagcaatgacagcggaagcggaaaatttaaa
actgtttgcatcactgtgagaatccctcgtaatccaactatcggagacaaatttgccagc
cgacatgggcagaaaggtattttgagcagactctggcctgttgaggatatgccatttaca
gagagtggaatggttcctgatattctcttcaatcctcatggctttccatcccgaatgacc
attggaatgttaattgagagcatggctgggaagtctgcagcgctgcatggcctttgtcat
gatgccacacccttcacgttttcagagaaaaactctgccttggaatattttggcaggatg
ttaaaggctgctggctacaactactatggcacagagaggatgtatagtgggatcagcggg
gtggagctggaggcagacattttcattggagttgtgtactatcaacgcctgcgccacatg
gtttctgacaagttccaagtgaggacaacaggagccagagataaggtcaccaaccagccc
ataggtggaagaaacgttcagggtgggattcgttttggagagatggaacgtgatgctctg
ttggctcatggcacgtccttcttgttgcatgaccgtctgttcaactgctctgatcgttca
gtagcccacgtctgtgtgaagtgtgggagcttgctttcacctttgttggagaagcctccc
ccatcctggtctgccacacgaaataggaaatactgctgtactgtttgcaaccagagtgac
acaattgacacagtatcagtgccttatgtcttccgatattttgtggccgagttggcagcc
atgaatataaaagtgaaacttgatgtgaaataa
DBGET
integrated database retrieval system
