Alligator mississippiensis (American alligator): 102565642
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Entry
102565642 CDS
T03087
Symbol
LSM5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102565642 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
102565642 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102565642 (LSM5)
03041 Spliceosome [BR:
amj03041
]
102565642 (LSM5)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102565642 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
102565642 (LSM5)
Spliceosome [BR:
amj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102565642 (LSM5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
LSM14
Motif
Other DBs
NCBI-GeneID:
102565642
NCBI-ProteinID:
XP_006258260
UniProt:
A0A151P2R8
LinkDB
All DBs
Position
Un
AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaacgcgacgactaacccgtcgcagctcctgccgctcgagcttgtggacaaa
tgtataggctcacgtattcacattgtgatgaagagtgataaagaaattgttggcacgctc
ctagggtttgatgactttgtcaacatggttttagaggatgttacagaatttgaaattaca
cctgaaggaagaagaattacaaaactagatcagattttgttaaatggaaacaacataaca
atgctggttccgggaggagaaggacctgaagtataa
DBGET
integrated database retrieval system
