Alligator mississippiensis (American alligator): 102565735
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Entry
102565735 CDS
T03087
Symbol
HBS1L
Name
(RefSeq) HBS1 like translational GTPase
KO
K14416
elongation factor 1 alpha-like protein
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102565735 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102565735 (HBS1L)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102565735 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
102565735
NCBI-ProteinID:
XP_006264498
UniProt:
A0A151M3D1
LinkDB
All DBs
Position
Un
AA seq
688 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDEDLYGQSVEDDYCISPSTAAQFIYSRRDKPSMLAEPLAEEYG
HEDAEEPASYFTSNHQLTGVDQARLYSCLDQMREVLAESVPEQVMVEAVLNSKFDVQKAL
DLVLAQDSKGNTKAKNECTVITGKATKGKSRDSQSTRIESEVVPKVAKMTVSGKKQSMGF
EVPCVVAEENGHGASASEKRPPSEDTSVTSGLVETVSKSALPSQTTQVSEEQSAAPTPVK
KSSKMKQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYE
QESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMI
TGAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQE
RFQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTKCESSELTKWYKGKCLLEQIDY
FKSPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITL
HDEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIRVCTRFRARVLIFNIEVPITK
GFPVLLHYQTISEPATIRRLLSVLHKNTGEVTKKKPKFLTKGQNALIELQTQRPVALELY
KDFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcacaggaacgtccgaggctacaactacgacgaagattttgaagacgaagac
ctttacggccagtcggtagaagatgattattgtatttccccatcaacagcagctcagttt
atctattcaagacgtgacaagccctctatgcttgctgagccattagcagaagaatatggg
catgaagatgctgaagaacctgccagttattttacatctaatcatcagctaactggagtt
gatcaagctcgactttattcatgccttgaccagatgagagaagttcttgcagagtctgta
ccagagcaggtgatggtggaagcagtgctgaatagtaaatttgatgtacagaaagcattg
gatcttgtccttgcacaagatagtaaggggaatacaaaggctaagaatgaatgcacagtc
attacaggaaaggcaacaaaaggaaaatcaagggattcccagtctaccagaattgaatct
gaagttgttccaaaagttgccaaaatgactgtgtccggaaagaaacagtctatgggattt
gaagttccatgtgtggttgctgaagagaatggccacggtgctagcgcatctgaaaaaaga
ccaccatctgaagataccagtgttacttctgggttagttgagacagtctcaaaatcagct
cttccatcccaaacaacgcaggtgtcagaagaacagagtgcagcacctactccagtgaaa
aagtctagcaagatgaaacaacaaatagatgtgaaagcagaactggaaaagaggcaagga
ggaaagcaactgctgaatttggtggtaataggtcatgttgatgcaggcaaaagtacttta
atgggtcatttactctaccttctgggaaatgtgaacaaaagaacaatgcacaaatatgaa
caggaatctaaaaaggctggaaaagcttcatttgcctatgcatgggtcttggatgaaact
ggagaagaaagagaaaggggagtaacaatggatgtgggtatgacgaaatttgagacaaag
acaaaagtgattacgttgatggatgctccgggccataaagatttcatcccaaatatgatc
acaggagctgcacaggctgatgtggcaatcttggttgtggatgccagcagaggagagttt
gaagcagggtttgagactggtggacagactcgagaacatgggttattggttcgttctctt
ggagtaacacaactggctgttgcagtcaataaaatggaccaggttaattggcaacaggag
agatttcaagaaattaccagtaaacttggccagtttcttaaacaagctggctttaaggag
tctgatgtagcttatatcccaacaagtggtcttggaggtgaaaacctggttacaaaatgt
gaatcaagtgaactcactaaatggtataagggaaaatgtttgctagagcaaattgattat
ttcaagtcaccacagagatcagtggaaaaaccattcagattgtgtgtttctgatgtcttt
aaagaccaaggatcaggattttgtgtaactggtaaaatagaagcaggctatattcaggtt
ggagagagacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactg
catgatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggc
atggatatcatcaaaatcaacgtgggctgtgtattttgcgatcccaaggaacccatcaga
gtttgtactcgtttcagagctcgggtcctcatctttaatattgaggtcccaattactaaa
ggattccctgtgcttttacattatcaaaccataagtgagccagccactatcaggcgatta
ttgagtgtccttcacaagaatactggcgaagtcacaaagaaaaaacctaaatttctgact
aaaggacagaatgctttaatagaactacagacacaacggcctgttgctcttgagttgtac
aaagatttcaaggagctaggaaggtttatgttacgctacagtggatccactattgctgca
ggagttgtcacggagattaaagaatga
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