Alligator mississippiensis (American alligator): 102565800
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Entry
102565800 CDS
T03087
Symbol
YTHDC2
Name
(RefSeq) YTH domain containing 2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102565800 (YTHDC2)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102565800 (YTHDC2)
Spliceosome [BR:
amj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102565800 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
Ank
ATPase
Ank_4
PhoH
AAA_23
AAA_7
AAA_16
T2SSE
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
102565800
NCBI-ProteinID:
XP_006258990
LinkDB
All DBs
Position
Un
AA seq
1418 aa
AA seq
DB search
MSRPSSESPRPAPGGGGRGRAKGLRDIRVDEEVKIAVNLALERFRYGDQREMEFPSSLTS
TERAFIHRLSQSLGLISKSKGKGANRYLTVRKKDGSELAHTVMTCSLIPNTKHAIRSLIQ
RFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQS
LPVFEKQEEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDCYKNGIPCRIFCTQPRRLA
AIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTH
VIVDELHERDRFSDFLLIKLRDILQKQANLKLILSSAALDVNLFIRYFGSCPVIHIQGRP
FEVKEMFLEDILRSTGYTNKEMMKYKKEKQREEKQQTTLTEWYSAQDSSSKPEAQRQRSV
PSVAEEYDLLDDGGDTVFSQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDVDAFAQVFHLI
LTENVSVDYRHSETSATALMVASGRGFLSQVEQLVSMGANVHCKSSNGWMALDWAKHFGQ
TEVVDLLESYSASLEFGNLDESSLVQANDGDLSAEDRELLKAYHHSFDDEKVDLDLIMHL
LYNICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNVHRYQVFMLHSNMQTSDQKK
VLKTPPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALNCVTMLKMVWISKAS
ALQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCPIAD
FLMKAPDPPPGLIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLK
CLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKARS
DGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVK
GALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPT
DWLIYDEMTRAHRIANIRCCSAVTPVTVCLFCGPARLPSNALQEPSSFRVDGAPNDSSDS
EMEDKTTANLAVLKLDEWLHFKLDPEASSLLLQLRQKWHSLFLRRMRAPSKPWSQVDEAT
IRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNTSRKSSAETEFSDDSS
NAEKVLMKSISPAFHQPQKYKERGILHSKRSSEDRSDQSSVKSTDSSSYPSPCASPSPPL
SGKGSKSPSPRPNMPVRYFIMKSSNLRNLDISQQKGIWSTTPSNERKLNRAFWESSIVYL
VFSVQGSGHFQGFARMSSEIGREKSQEWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWN
DNKKVQISRDGQELEPQVGEQLLQLWDHIPVVGKNTTD
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccagcagcgagtccccgcggcctgcgccgggcggtggtggccgcggccgg
gccaaggggctgcgggacatccgtgtggacgaggaggtgaagatcgccgtgaacttggcc
ctggagcggttccgatacggcgaccagcgagaaatggaatttccctcttctttgactagt
acggaacgagcttttattcaccgactgagtcagtcccttggcctcatctccaaaagcaaa
gggaaaggagcaaacagatacctaactgtaaggaaaaaagatggttcagaattggcacat
acagtaatgacttgcagtttgattcccaatacaaaacatgctattaggagtctaattcag
agatttcctgtcaccaataaagaacgcactgaacttttgccaaaaacagaacgaggaaat
gtgtttgctgtcgaagctgagaatcgagaaatgagcaagacaagtgggagacttaacaat
ggcatccctcagattccagtgaaaaggggagaatctgaatttgattccttcaggcaatct
ctaccagtttttgagaaacaggaagaaattgtcagaattattaaagaaaataaagttatt
ttgattgtgggagaaactggatcaggaaaaacgactcagattcctcagttccttcttgat
gattgttataaaaatggaattccatgtcgcatattttgcactcagccaagacgtttggca
gcaattgctgtagctgaaagggttgctgcagaaagaagagaaaagattggccagacaatt
ggttatcagatcagattagaaagcagggtttctccgaagacactattaacattttgcact
aatggtgttttacttcgcacactaatggcaggagatagcacgctatcaacagtgacacat
gttattgtggatgaattacatgagagggatagatttagtgatttcttgttaataaaactg
agagacatattgcaaaaacaagcaaatttgaaactgattctatctagtgctgccctagat
gtgaatctgtttatcagatattttggaagttgcccggtaattcacatacaaggaagacca
tttgaagttaaggagatgtttttagaagacattttacgaagtactggatatacaaataaa
gaaatgatgaaatacaaaaaagaaaaacaacgagaagagaaacagcaaacaaccctcaca
gaatggtattctgctcaagacagtagtagtaaaccagaggctcaaagacaaagatctgtc
ccgagtgtagctgaagaatatgacctgttggatgatggtggtgacacagtattcagtcag
ctgactgaaaaagatgtgaactgtcttgaaccttggttaataaaagaaatggattcctgt
ctctctgacatatggttgcataaagatgttgatgcctttgctcaggtgtttcaccttatt
ttaactgaaaatgtcagtgttgattataggcacagtgaaaccagtgcaactgcgctaatg
gttgcttcagggagaggcttcttgagtcaagtagagcagctagtcagtatgggagcaaat
gtgcactgcaaatcatccaatggctggatggctttggattgggctaagcactttggacag
actgaggtggttgaccttctggaatcctatagtgcttccttggagtttggaaatctggat
gaaagttctctggtccaggcaaatgatggtgaccttagtgcagaagacagagagctactg
aaagcataccatcacagttttgatgatgagaaagtggatctggacttgattatgcaccta
ctttacaacatctgtcatagttgtgatgctggagcaattttaatttttctacctggctac
gatgaaatagttagcttgagggatcgcattctgtttgatgacaagagatttgctgataat
gttcacaggtaccaggtttttatgctgcattcaaatatgcaaacatcagatcagaagaag
gtgctgaaaactccacccccaggcatccgcaaaataattctttcaactaacattgcagaa
accagcattacagtcaatgatgttgtgtttgttattgactctggcaagatgaaagagaaa
tcctttgatgcattgaactgtgttacaatgttaaaaatggtatggatttcaaaagctagt
gccctccagcgaaaaggcagggctgggcgctgccggcctggaatctgtttccgactcttc
agcaggctccgatttcagaatatgttggaattccagactccagaacttctaagaatgcca
ttgcaggagctttgtttgcacacaaaactgttggctccaattaactgtcctattgctgat
tttctgatgaaagccccagatcctccaccaggcttaattgtcagaaatgctgttcaaatg
cttaagacaatagatgccatggatacctgggaagatctcacggaacttggttatcatctt
gctgacctcccagtagagccacaccttggtaaaatggtgttgtgtgctgttgttttgaag
tgcctggatcctattcttaccattgcttgcactcttgcatatcgagacccttttgtccta
cctacacaggcctcacaaaaacgtgcagctatgctgtgtagaaaacgttttactgcggga
acatttagtgaccatatggcgcttctcagggcttttcaggcatggcaaaaggcacggagt
gatgggtgggagagagccttctgtgagaagaactttctttcccaggctacaatggaaata
atcatagggatgaggacacagttacttggtcagctcagagcttcaggttttgtgagggct
agaggtggaggtgatattcgggatgttaacaccaactctgaaaactgggctgtagttaaa
ggtgctctagtagctgggatgtatccaaaccttgtccatgtggacagagagaaccttgta
ttaactggaccaaaagagaagaaagtgcgatttcacccaacctctgttcttagtcagcct
cagtataaaaagattcctccagcaaatggccaagctgcagctattcaggcgctccccaca
gattggctaatatatgatgaaatgactagagcacacagaatagcaaacatccgatgctgt
tctgctgtgacacctgttacagtgtgcctcttttgtggaccagcaagattaccaagtaat
gctttacaggagccctcatctttcagagtggatggtgcacctaatgatagtagtgatagt
gagatggaagacaaaacaactgctaatctggctgtattgaagctagatgaatggctgcat
ttcaaactagatcctgaggcttccagtctgctgttacaactcagacagaaatggcacagc
ttatttcttcgccgcatgagagccccttctaaaccttggtctcaagttgatgaagcaact
ataagagcaatcatagctgttttaagtactgaagagcagtctgcaggtttacagcagcct
tcaggaattggacaaagaccaagaccaatgtcttctgaagagcttcccttagcatcttca
tggagatcaaataccagcagaaaaagctcagcagaaacagaattctctgatgactcttct
aatgctgaaaaagtcttaatgaaatctatatcgccagcatttcaccagccacagaaatac
aaagaaagaggtatcttacattccaaacgaagttcagaagacaggtcagatcagtcatct
gtgaaatccacagacagtagcagttatcccagcccatgtgccagtccttctcctccatta
tctggaaagggctccaagtctccttcaccaagaccaaatatgccagttcggtacttcata
atgaagagcagcaatctgagaaaccttgatatttctcagcaaaagggtatatggtctaca
accccaagcaatgagcggaaattaaatcgagctttctgggagagcagtatagtttacttg
gtattttcagttcaaggatctggacattttcagggttttgctagaatgtcttcagagata
ggacgtgagaaaagtcaggagtggggctccacaggcttaggaggagtgtttaaggtggag
tggatccggaaagaaagtcttccctttcaatttgcgcatcacttactcaacccttggaac
gacaataagaaagtacaaataagcagagatggccaggaactggaaccacaggttggagaa
cagttgctacagctttgggatcatattcctgtggttggaaaaaacacaactgattga
DBGET
integrated database retrieval system
