Alligator mississippiensis (American alligator): 102566132
Help
Entry
102566132 CDS
T03087
Symbol
CACNA1H
Name
(RefSeq) calcium voltage-gated channel subunit alpha1 H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04010
MAPK signaling pathway
amj04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102566132 (CACNA1H)
04020 Calcium signaling pathway
102566132 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amj04040
]
102566132 (CACNA1H)
Ion channels [BR:
amj04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102566132 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
102566132
NCBI-ProteinID:
XP_019350094
LinkDB
All DBs
Position
Un
AA seq
2526 aa
AA seq
DB search
MRGGGTDLVSPLCSAVQVPAAIMTDGERREPFQPPASEEVRVPIASLPSQAPRPGEDEDA
LSACKSIQGSLGSGGSPTRDPARELGSEEEEQVPYPALAPTVFFCLKQTTRPRSWCLKLV
CNPWFEHVSMLVILLNCVTLGMFQPCEDVKCKSERCTILEAFDHFIFAFFAVEMVIKMVA
LGIFGQKCYLGDTWNRLDFFIVMAGMLEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMR
ILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDSNFAMTYNLTFLHP
YYQPDGEDNPFICSSHRDNGMQKCSNIPNNKEYKVECTLSMDSYTQNLYNPEFSNRNACI
NWNQYYNVCVAGDVNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIY
FILLIIVGSFFMINLCLVVIATQFSETKQRENQLMQEQRARYLSNDSTIASFSEPGSCYE
ELLKYICHIFRKVKRRTLRLYNNWQSKRRKKVNPNSTTNGQSRRGRKRITSIHHLIHHHH
HHHHHHYHISNGSPRGPRSNPEICGLELKVMKPRGQLMLPSPSPNLQSPPAPDSESVHSI
YHADCHVEAPQVKCKSSNTPTSIKLAAGLTNHGNMNYPTILPSPASKANSIPGPKGKKNG
SSPVPMVNSPVRLNADSFGKLQHLMGEHGLRRASSRLSGLNVPCPLPSPQASMLTCELQN
CPYCASILEDPEFEFSESDSYDSDNNGVYEFTQDLRHGDQRDQIQQQRNKRRKKKKKPKE
KNKVARLWSAFGNKLKKIVESKYFNRGIMIAILINTLSMGIEYHEQPDELTNALEISNIV
FTSMFALEMLLKLLAFGIFGYIKNPYNIFDGIIVIISVWEIIGQSDGGLSVLRTFRLLRV
LKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTETGDTV
PDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLV
AILVEGFQAEGDANRSDTDEDKTSANFEEDFEKLKDLRAAGGEMKMYSLAVTPNGHLEAR
GSMPPPIIMRTAATPMPTPKCSPHMDSVHTFVDSRRGSNASIDPLSYDQKSLSSLRSSPC
ANWGPSSNWGSRRSSWNSLGRAPSLKKKNQSGERESLLSGEGKGSTDDESDDAKSSTVSR
ASLHRRAESLDYRSSLDLPELLQLPSMRHSLSINPMAMLPTEYQDCNGKMMHVPSEFFLR
IDSHKDDPLDYDDDMEDSYCYRIRKILEPYKPEWCKNHEDWSLYLFSPQNRFRAMCQKVI
AHKMFDHVVLVFIFLNCITIALERPDIDPHSTERIFLSVSNYIFTAIFVAEMMVKVVALG
FFSGENTYLQSSWNVLDGVLVFVSIIDIIVSMASAGGAKILGVLRVLRLLRTLRPLRVIS
RAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGSDTKNITTKA
DCTNARYKWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPSQNHNPWM
LLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRSKEIY
MSEAQRRPYYADYSPARRYIHTLCTSHYLDLFITFIIGVNVITMSMEHYNQPKSLDEALK
YCNYVFTIVFVFEAVLKLVAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIEMNAALPIN
PTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVEL
FGKLDCSEDNPCEGLSRHATFANFGMAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLS
YLPVISPVYFVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIELEMSRGAAT
PASSGGGGSTAASDGRAPYGSQEGGKLESPLRVKQQALEALSCENVSLAMPDSDPLEGGE
TPVMQHTSFCSVPHHHVPTPSHKAPGHESEEGAACLWAKKESQNFLTVRKISVSRMHSLP
NDSYMFRPVMPAKPPYPLHEVEMESYPCKSQRGSITSTRSQPVGTSSSLRIPTECLQLTA
GPSYRNTRDLWKIHPLTATPRSPSLNRLLCRQEAIRTESVDGQKAETKDNVQEESGESLQ
PKKPSQSTLSPPLLHPAPLSLPGTPPHSPASPSHHRHSSVRTRKHTYSQHSIPSRASSDS
SDPLHPGNSLFESSDLADEEVSHINSSAKDWREAPGSRSLSVSPFASLASSPAHRKNCST
TSLAGSGGSREKDLKKFYSVDTKGFLDKPSWADDQRRHSIEICPSLDDGDCSFEQPAEGA
PRSPIHVQLESEYVHGARRKKKMSPPCISIDPPMEDESGAASRTKASENSLLRRRTPSCE
SAAYRDSLDLAENPPGEQPSKAERRVQPLCRGEHLAIPNFSFEQSDASSLSSLSELLLDS
GQSSPSTGESRPDPAALELKKLEPLKTQCNHPETNKELLVVTKSPLRKHGLVSMTVATDE
DIEEPV
NT seq
7581 nt
NT seq
+upstream
nt +downstream
nt
atgcgagggggtggcacggacttggtgtcccccctttgttctgctgtccaggtcccggct
gctatcatgactgatggcgagaggagagagcccttccagccgccggcgagcgaggaggtg
cgggtgcccatagcctccctccccagccaggcgccccggcccggggaggacgaggatgct
ctcagcgcctgcaagtcgatccagggcagcctgggctcggggggctcccccacccgggat
ccggctcgggagttgggctcagaggaggaggaacaggtcccttacccggcactggcgccc
accgtcttcttctgcctcaagcaaaccacccggccgcgcagctggtgcctcaaactggtc
tgtaacccctggttcgagcacgtcagcatgctggtcatccttctgaactgcgtcacgttg
ggcatgttccagccctgcgaagatgtgaagtgcaagtccgagcggtgcactatcctggag
gcgtttgaccacttcatctttgccttctttgctgtggagatggtcatcaagatggtagcc
ttggggatcttcgggcagaagtgttacctgggagatacgtggaatcgcctggacttcttc
atcgtaatggctggcatgttggaatattcgctggatggacacaatgtaagcttatccgcc
atccgaaccgtccgggtactcaggcctttacgagccattaacagggtcccaagtatgcga
atactcgtcaccctgctgttagatactctgcctatgttaggcaacgtccttctcttgtgc
ttctttgtcttcttcatctttgggatcgtcggcgtgcagctctgggcagggctgctgaga
aacaggtgtttcctcgacagcaattttgcaatgacatataacctaactttcctgcatccg
tattatcagccagacggggaggataatccattcatctgctcgtcccatcgggataacggc
atgcagaaatgctccaatatcccaaacaacaaggagtacaaagtggagtgcaccttgagc
atggactcctacacccaaaatttgtataacccagaattcagcaacagaaatgcctgcata
aactggaaccaatattacaacgtatgcgtggcaggggatgtgaacccacataatggagct
attaattttgataatattggctatgcctggatagctatttttcaggttataaccctggaa
ggatgggttgacatcatgtattatgttatggatgcacattctttttacaattttatatat
tttatattgcttataatagttggttctttcttcatgattaacttgtgcctggttgtgata
gcaacacagttttctgaaacaaaacagcgggagaaccagctgatgcaagagcagcgggcc
cgctacctctccaacgacagcacaattgccagtttctcggagccaggcagctgctacgag
gagctcctcaaatatatctgccacatcttcaggaaggtgaagcgccggacgttacgcctg
tacaacaattggcagagcaagcgccggaaaaaagtcaaccccaacagcaccaccaacggg
cagagccgccggggcaggaagcgcatcacctctatccatcacctcatccatcaccaccat
catcaccaccaccaccactaccacatcagcaacggcagcccccggggcccgcgctccaac
ccggagatctgcggcctggaactgaaggtcatgaagccgagaggccaactcatgcttcct
tctccatcgcccaatttgcagagccctcccgctcccgattcggagtcggtgcatagcatt
taccacgccgactgccacgtcgaggccccccaggtgaaatgcaagtcttccaacaccccc
acaagtattaagctggctgctgggctcaccaaccacggcaacatgaactacccgaccatc
ctgccttctccggctagcaaagccaactctatcccaggtcccaaaggaaagaaaaacggc
agctcgcctgtgcccatggtgaatagcccggtgcgcttgaatgcggattcgtttgggaag
ctgcaacacctgatgggagaacacggtctgcgcagggcttccagcaggctgtcggggttg
aacgtgccgtgcccgctgcccagcccccaggccagcatgctgacctgcgagctgcagaac
tgcccctactgcgccagcatcctggaggaccccgagttcgagttcagcgagtccgacagc
tacgactccgacaacaacggggtgtacgagttcacacaggacctgcggcacggggaccag
cgggatcagattcagcagcagaggaacaagaggaggaagaagaagaagaaacccaaggag
aagaataaagtggccaggctgtggtccgctttcggcaacaagctgaaaaagatcgtggag
agcaagtatttcaaccgggggattatgatcgccattctgatcaacacgctgagcatgggg
atcgagtaccacgagcagccggatgagctgaccaacgccttggagatcagtaacattgtc
ttcaccagcatgtttgccctggagatgctcctcaagctcctggcctttggcatcttcggt
tacatcaagaacccatacaacatcttcgatgggatcatcgtcatcatcagcgtctgggag
atcatcggccagtcggacggaggcctttctgtgctacgaacttttcggctgctcagagtc
ctcaagctggtgcgtttcatgcccgcccttcgccgtcagctcgtggtcctgatgaagacg
atggataacgtggccaccttctgcatgctgctcatgctcttcatattcattttcagcatt
ctcggcatgcatctttttggatgcaagtttagcttgaaaacagaaacaggggacaccgtt
ccagacagaaagaacttcgattccttgttgtgggccatcgtgaccgtctttcagatcctc
acgcaagaagactggaacgtggtgctctacaacgggatggcatccacctcctcgtgggct
gcgctgtacttcgtggccctgatgaccttcggcaactacgttctcttcaacctcctcgta
gccatcttagtcgaaggcttccaagcagagggtgatgccaacaggtcagacacggatgag
gacaagacgtctgccaacttcgaggaggattttgagaagctgaaagacctccgggcagca
ggtggggagatgaagatgtactctttggccgtcaccccaaacggacacttggaggcccgg
ggaagcatgcccccacccatcatcatgcgcaccgccgctacgcccatgcctacgcccaag
tgctcgccgcacatggactcggtgcacacctttgtggactcgaggagagggagcaatgcc
tcgatagatcccctgagctacgatcaaaagtccttgtccagcctccgcagctcaccctgt
gcaaactggggacccagcagcaactggggaagccggcgctcaagctggaacagcctaggc
cgggccccgagcctcaagaagaagaaccagtccggggaaagggagtccctgctgtccgga
gaggggaaagggagcacagatgatgagtccgacgatgccaagtccagcaccgtcagcagg
gcgtccttgcaccgccgggcggagtccttggattacaggagctccttggacttgcccgag
ctccttcagttgcccagcatgcgccattccctcagcatcaaccccatggccatgctgccc
accgagtaccaggactgcaacggcaaaatgatgcacgtgcccagcgagtttttcctgcgc
atcgacagccacaaggacgaccccttggactacgatgacgacatggaggatagttactgc
tacaggatccgcaaaatactggagccctacaaaccggagtggtgcaagaatcacgaagac
tggtccctctacttgttttctccgcaaaatcggtttcgagccatgtgtcagaaggtgatc
gcccacaagatgtttgaccacgtggtgctcgtcttcatcttcctcaactgcatcacgatc
gctctggaaaggcccgacatcgacccccacagcacggagaggatattcctcagcgtctcc
aattatatcttcactgcgatcttcgtggctgagatgatggttaaggtggtggctctcggc
ttcttctctggagaaaacacctatctccaaagcagctggaatgtcctcgatggggtcctg
gtctttgtctccatcatcgacattattgtctccatggcatcggccggcggggctaagatc
ctgggcgtccttcgcgtcttaagactgctgcgaaccttgaggcctctccgagtcatcagc
agagcccctggtctgaagctggtggtggagactttgatatcgtctctgaggcccattggg
aatatcgtgctcatctgctgcgctttcttcatcatctttgggatattaggagtgcagctt
tttaaaggcaagttctactactgcgaagggtcagacaccaagaacatcaccacaaaagcc
gactgcaccaatgcacgctacaagtgggtccgacggaagtacaactttgacaacttaggg
caggctctgatgtccttgtttgtcctttcatccaaagatggctgggtgaacatcatgtat
gacggcctggacgctgtgggcattgaccagcagcccagccagaaccacaacccttggatg
cttctctacttcatctccttcctgctcatcgtcagcttcttcgtgctcaatatgtttgtg
ggggtggtggtggagaacttccacaagtgccggcagcaccaagaagcagaagaggcccgt
cggcgggaggagaagcggttgaggcgcctggagaaaaagcgcaggagtaaggagatatac
atgtctgaagcccagcgccgaccctactacgctgactattccccagcccggaggtacatc
cataccctttgtaccagccactatctggacctgttcattacgttcatcattggtgtcaac
gtcatcactatgtccatggagcactacaaccagcccaagtccctggatgaagcactgaag
tactgcaactacgtgttcaccatcgtttttgtgtttgaagctgttctcaagttggtggca
tttggttttcgacgattctttaaagacagatggaaccagcttgaccttgccattgttctg
ctctccatcatgggcatcaccctggaggagattgaaatgaatgcggcgctccccatcaat
cccaccattatccggatcatgcgggtgctgagaatagcaagagtactgaaactgctcaaa
atggccaccggcatgcgagctctcttggacaccgtggtgcaggcgttgccccaggtaggg
aaccttggcctactttttatgctcctgttttttatctatgctgccctgggagtggagttg
tttggaaagcttgattgcagcgaagacaatccctgcgagggcttgagccgccacgccacc
ttcgccaacttcggcatggccttcctcaccctcttccgggtgtcgaccggagacaactgg
aacggcatcatgaaggacacgctccgagagtgcacccgggaggacaagcactgcctcagc
tacctgccggtcatctcccccgtctacttcgtcaccttcgtcctcatcgcccagttcgtc
ctggtcaacgtggtggtggccgtgctcatgaaacacctggaggagagcaacaaagaagcc
aaggaggatgccgagatggacgccgagatcgagctggagatgtcccgcggagctgccacc
ccggccagcagtgggggtggagggagcaccgctgcctccgacggcagggccccgtacggg
agccaggagggcgggaagctggagtcacccctgcgagtgaaacaacaggcactggaggca
ctgagctgtgagaacgtgtctttagccatgccagactcagacccgctggagggcggagag
actcccgtgatgcagcacacgtccttctgctctgttcctcaccaccatgtcccgacacct
tcccacaaagcccccggccacgagtcagaggaaggagctgcctgcctctgggcgaagaag
gagtctcaaaacttcctgactgtccgcaagatctcggtgtccaggatgcactccttgccg
aacgatagctacatgttccgccccgtgatgcccgccaaaccaccgtacccgctgcacgag
gtggagatggagagctacccctgcaagtcacagagagggtccatcacctctacccggtcc
cagcccgtggggacaagctcctctctgagaatccccaccgagtgtcttcagctgaccgcc
ggaccgtcttaccgcaacacccgagacctttggaagatccatcccctgacggccaccccg
cgatctcccagcctcaaccggctgctgtgtaggcaggaggccatcaggactgaatccgtg
gatgggcagaaagcggagaccaaggacaacgtgcaggaggagtctggcgagagcctgcag
ccgaaaaagccatcccagagcaccctaagcccccctctgctgcatcctgcccctctctcc
ctgccaggcacccctccgcattcccctgcctcgccgtcgcaccacaggcactcgagcgtc
cgcacccgcaagcacacgtatagccagcacagtattcccagccgggcttcgagcgacagc
agcgacccgctgcaccccgggaactcgctcttcgagtcctcggacctggcggacgaagag
gtcagccacatcaacagctcggcgaaagactggcgggaggcgcccggatcgaggagcctc
tccgtctccccttttgcctccctggcttcctcgccagcccaccgcaagaactgcagcaca
accagcctggcagggagcggcgggagcagagagaaggacttgaagaagttttacagtgtt
gacacgaaagggttcctggacaagcccagctgggcagacgaccaaagacggcactccatc
gagatctgtccctcgctggatgatggagactgcagctttgagcagccggcggagggcgcg
ccgcgctcgcccatccacgttcagctcgagtccgagtacgtccacggggctcggaggaag
aagaagatgagcccgccgtgcatttctatagatcctcccatggaggacgaaagcggcgcg
gcctcccgtaccaaagcatccgagaacagcctgctgcggaggaggacgccctcctgcgaa
tccgcggcctacagagattctttggacctggccgaaaacccgccgggggagcagccctcg
aaagcggagcggcgggtccagccgctgtgtcgaggggagcacctggccatcccgaacttc
tccttcgagcagtcggacgccagctccttgagcagcctctcggagctcctgttggacagc
ggccagtcctcgccctccaccggggaatcccgcccggaccccgcggcgctcgagctgaag
aagctggagcctttaaaaactcagtgcaaccacccggagaccaacaaggagctcctcgtg
gtcacgaagagccccctacggaagcacggactggtctctatgaccgttgcaacagatgaa
gacatagaggaacccgtatag
DBGET
integrated database retrieval system
