KEGG   Alligator mississippiensis (American alligator): 102566270
Entry
102566270         CDS       T03087                                 
Symbol
HELZ
Name
(RefSeq) helicase with zinc finger
  KO
K25168  helicase with zinc finger domain [EC:5.6.2.-]
Organism
amj  Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:amj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102566270 (HELZ)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    Other 5'-3' decay factors
     102566270 (HELZ)
   3'-5' decay
    Other 3'-5' decay factors
     102566270 (HELZ)
SSDB
Motif
Pfam: AAA_12 AAA_11 AAA_19 zf-CCCH AAA_30 UvrD-helicase ResIII PhoH PAM2 zf_CCCH_4 Mov-10_helical AAA_22 zf-CCCH_4 AAA_7 AAA_16 Bac_DnaA AAA_5 Mg_chelatase
Other DBs
NCBI-GeneID: 102566270
NCBI-ProteinID: XP_019349870
LinkDB
Position
Un
AA seq 1943 aa
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQFPPAHFTEACQAEIDRIKIESL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAASKVPSGYHGEDLEEGSQDGWQFRPPPRGVTSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLI
EKWMNSLSPEKVLSENVEGVRVEHNPELSVTVTTKKSHQTWMFALTCKPARMLYRVALLY
DAHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGKMAQNGIDHYVYKVTIAFNTEIFGT
FRQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNE
TTELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVT
KEKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHSANTNKQQQSPPKGKGHHHNQND
HFQTDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAV
YGGNMVMSVPLPVPWTGYQGRFAVDPRIISHQAAMAYNMNLLQAHGRGSPIPYGLGHHSP
VSIGQQQQSLQHQDKEQHEQNRNGKSETNTGPEINKIRTPEKKPVESKQVDLEASSQNRS
PESRSSIGYPNSKFHRKDNINPRQLNLHLTPPHTQYAVPSRHYQHLSQIPRQPYPLQQQQ
NLLNQQQNHLPEQQNQMPPQQSQIVQQHNHLNQQPQQPSQLSPAYQAGPNQSFFNNPIPH
RPHSPAVDAVISEQHPPPMLQEVTNPLRPIAQHNPMLPSHLNNFIEENPTGMPIGEALDR
MHGNVALETIRQQQQARLQQWNEHNAYLSQGNIPYPHHHHPHLQHLSQQPIGLHQQPVRA
NWKLANNAEDETEATYSRFQDLLRELSHRDQNESRDLTEMPPPQSRLLQYRQVQPRSPPA
LPSPSCNSNHSGHFPNFTENSRDIEMSNNPAFQQHLPQIYNPPFSMPSEHITPPPLKYLQ
PDGSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLTSRAVS
ASSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEDLNTPQDSLGQCKELQDHSNQSSFNY
SSPELWVNSTSSTPYQNIPCNGATRAVPPRELLAPPKTVKPPEDPLKAENIQLSNSFNYN
VLQHLGQFPPLMPNKQIVESNSNSQQNAGGNKPAMSYASALRAPPKPKPPPEQAKKNSDP
LSLFQELSLGSSSGSNGFYSYFK
NT seq 5832 nt   +upstreamnt  +downstreamnt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcacttaaacagcaa
gattatgaagtggccgtaaagcactgcacagaggcgctcctttccctcagccagttcccc
ccagctcatttcacggaggcatgccaggccgagattgaccgcatcaaaatcgagagtctt
ctctatagaattgcttcttttttacagcttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagagggactggccaagggagatggctctttccgtgcagtgctttgc
tgcatgcatcttaaagggaagctgcaaattgtatctaatgtcctttccaaatcactgatg
ggcgaatcattgaacggcatggtaactaaagatttgacaagactaaaaacacttcttgct
gaaacagaggcagcagctagtaaagtaccctcaggataccatggggaggatttagaggaa
ggatctcaggatggttggcaattccgccccccacccaggggagtcacaagcagtgaagag
tacacattgtgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtact
tcagcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccggttgatc
agattaaaacagcagaaggaaaacaaacaatgttcgggcagttatatggaaactttgatt
gagaaatggatgaattcgttatctcctgagaaagtgctgagtgaaaatgtagaaggagtg
agagtagagcataatcctgaactatcggttactgtcaccaccaaaaagtctcatcagaca
tggatgtttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcactgctttat
gatgcccatcgtcctcatttcagtatcgttgcaatatctgctggagacagcactacccag
gtgtcacaagaagtcccagaaaactgtcaggaatggataggaggaaagatggcccaaaat
ggaatagatcattatgtatacaaagtcacgatagcctttaacaccgaaatctttggaact
tttcgccaaactgtagtgtttgattttgggttggaaccagttctcatgcaacgagtaatg
attgatgctgcttcaacagaagatcttgaatacctgatgcatgcacgacaacagctacta
actacagctaagcgttgggattctacttctaagactattgtagaatttgagcctaatgaa
actactgaattggagaagagccttcttaccagataccaaattcctctgtctgctgaccaa
ctctttacacagtctgtcctggacaaatcattgaccaagaccaactatcaatcacggttg
catgacctcctttatattgaggaaatagcacagtataaggaagtcagcaagttcaacata
aaagtgcaattgcagattgtagcaagcttcatgcttactggtgtttccggaggtgcaaaa
tatgcccaaaatggacaactttttggccgctttaagctcactgaaactctttctgaagac
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgccagtcact
aaagagaagtcagcacaaacccaaggaaccaaagagaaggtttatgaagcagctattgaa
gagaaaacaaaggattatatcttcttgagagtatccagggaatgctgtgaagaacttaat
cttcgggcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctc
tgtgaaatgcattatgccttggacaggatcaaggacaacagtattttgtttccagatgtc
agcatgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccct
cgactaaatgcaaagcagaaagaggctgttctggctatcacaactccactttcaatacaa
ctgcctcctgttcttatcatcggtccctatgggacaggcaaaacattcactctggctcag
gcagtcaagcacatactccaacaacaggatactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtttatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaa
gaagatattcttaaacaacgagtagttgttgttactttgaacacttcacagtatctctgt
caactggatcttgaacctgggtttttcacgcatattctgttggatgaagctgcacaggcc
atggagtgtgagacgatcatgcctctggcattagctaataaaaacacaagaattgtcttg
gctggagaccatatgcaactcagtccttttgtctacagtgaatttgccagagagagaaac
cttcatgtttcattacttgatcggctgtatgagcactaccctgctgagtttccatgcagg
atcttactgtgtgagaactatcgctcccatgaagctatcatcaattacacgtctgaactt
ttctatgagggcaaattgatggcaagtgggaagcagccagcacacaaagatttctacccc
ttgacttttttcacagcacgtggagaagatgtacaggaaaaaaacagtacggctttctat
aacaatgcagaggtgtttgaagtagtagaacgtgttgaagagttgagaagaaaatggcct
gtagcttggggcaaattggatgatggcagcataggtgttgtaacaccatatgctgatcag
gtgttccgaattcgggcagaacttcgaaaaaagaggttatctgatgtcagtgtagaaaga
gtgctaaatgttcagggaaagcagtttagagttttgtttctcagtacagtgaggacccgg
catacgtgcaaacacaaacaaacacccattaaaagaaaagagcagttactggaggactcg
acagaagacttggattacggttttctgtccaattacaaacttctcaacactgccattacc
agagcacagtccttggtagctgtggtgggcgacccgattgcattgtgttccattggaaga
tgcaggaaattttgggagaggtttattgccctatgtcacgagaacgaaagtctccatggt
atcacatttgaacagatcaaggctcagttggaggctttggagttaaagaaaacttacgtg
ttgaatccactagctcctgaatttattcctcgggctcttcgacagcagcattcagcaaat
accaacaaacagcagcaatcgccacccaagggcaagggtcatcatcataaccagaatgat
cattttcaaaccgatggaattgttcaacccaatccttctgtcctcattggaaatcctatc
agagcatatactcctccccctccgcctcttggacctcaccccaatctggggaaatctcca
agccctgttcaaaggatagaccctcacactgggacgagcattctttatgtacctgctgtc
tatggaggaaatatggtcatgtcggtgcctttgcctgtaccatggacaggatatcagggt
aggtttgcagttgaccctcgaattatttctcatcaagcagctatggcgtataatatgaac
ctgttacaggcacatggccgtggctctccaataccttatgggctgggacatcattctcca
gttagtatagggcaacagcagcagtcacttcagcatcaggacaaagagcaacatgaacaa
aatcgaaatggtaaaagtgaaaccaacactggacccgaaatcaataaaattcggacacct
gagaagaaacctgtggaatccaaacaggttgacttagaagcaagttcccagaatagaagc
cctgagtcgcgttccagcataggttatcctaattcgaaatttcatcgcaaagataatatt
aaccccaggcagctgaatctacatctcacccctccccatactcagtatgcagtccccagt
cgccactaccagcacctgtcccagataccaaggcagccatatcctttgcaacagcagcaa
aacctcttaaatcagcaacaaaatcatttgcctgaacagcaaaaccaaatgccaccccaa
caaagccagatagtccagcagcataatcatttgaaccagcagcctcaacaaccttcacag
ctttcccctgcctatcaggcaggccccaatcagtctttttttaataatccaattccccac
cggccacattctcctgctgtagatgctgtgatttcagaacagcaccccccacccatgttg
caagaagtcactaatcctctgagacctattgcacagcacaacccaatgttgccatcccac
ttgaacaacttcattgaagagaaccctacaggaatgcccataggggaggccttagatcgt
atgcatggaaatgtagctttggaaacaataaggcagcagcagcaagcaaggctacagcaa
tggaatgagcataacgcctatctcagtcagggcaatattccatatccacaccatcatcat
cctcacctacaacatctttcccagcaaccaattggattgcatcaacagccagtgagggca
aactggaaacttgctaataatgcagaagacgaaacagaggcaacatattcaaggttccag
gacttgctcagagaactgtcacaccgtgatcaaaatgaaagtcgggacctaactgaaatg
ccacctccacagtcaagactgttgcaatacagacaagttcagcccagaagcccaccagca
ctcccttctccttcatgtaactcaaaccacagtggtcactttcctaacttcactgaaaac
agcagagacattgaaatgtccaacaacccagcatttcagcaacatttgccccaaatatac
aatcccccattctcaatgccatctgaacatataaccccacctcccttgaaatacctgcaa
cctgatggatcgtggacctatgctaacctacagcagaatcacctaatggggcagggcttt
cattatggtatacctccattaccccatagatcacaacagaacccttttatacaaatacag
aatcatcagcatgcagtcggtcaggagccatttcatccactcacatctcgagcagtatct
gcttcttcgcttcacagcttagaagagtatgaacccagaggaccaggcaggccgttgtac
caaagaagaatttcctctagttcagtccaggcttgttctgaagatttaaacactcctcaa
gacagtcttggtcagtgtaaagagcttcaggaccatagtaaccaatcttctttcaactat
tcatcacctgagttgtgggtaaactccacctcatctaccccctatcagaacattccatgc
aacggagccaccagagcagtaccgccccgagagttattagctccaccgaagacggtcaaa
cctcccgaggatcccctgaaagccgaaaacatacagctgtccaattccttcaactacaac
gtgctgcagcatcttggccagttcccacccctcatgcccaacaagcagatcgttgaatca
aacagcaacagccagcagaatgctggtgggaacaagcctgccatgtcctacgcaagtgct
ctgcgggctccgccaaagcccaaaccccctcctgagcaggcaaaaaagaatagcgaccct
ttgtctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcc
tattttaaataa

DBGET integrated database retrieval system