KEGG   Alligator mississippiensis (American alligator): 102566407
Entry
102566407         CDS       T03087                                 
Symbol
POLQ
Name
(RefSeq) DNA polymerase theta
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
amj  Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:amj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amj03400]
    102566407 (POLQ)
Enzymes [BR:amj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     102566407 (POLQ)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    102566407 (POLQ)
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII Helicase_dom4_arc DUF4332 HHH_5
Other DBs
NCBI-GeneID: 102566407
NCBI-ProteinID: XP_014459368
LinkDB
Position
Un
AA seq 2595 aa
MAARSLTPPPPRRPVLSPTGPSPSGQCQRMNIPEDQADKLLLASWGLPKAVLEKYHSLGV
VHMFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETHKKALFILPFVSV
AKEKKYYLQALFQEVGVRVEGYMGNTSPAGRFSTLDVAVCTIERANGLINRLIEENQMDL
LGMVVVDELHMLGDSHRGYLLELLLTKVRFITEKVTKRQAKASSPAFGGIQIVGMSATLP
NLHLLASWLNAELYHTDFRPVPLMEWVKIGSNIYDSSMNLVREFQPMLQLKGDEDHVVSL
CYETVRDGHSVLLFCPSKNWCEKLADIIAREFCNLQLSERKTSNLPPIPLNKEAIEEVMD
QLRQSLSGLDSVLQRTLPWGVAFHHAGLTFDERDVIEGAFRQGLIRVLAATSTLSSGVNL
PARRVIIRTPVFGGKLLDILAYKQMAGRAGRKGADTVGESILVCKPSERSKGIALLQGSL
KPVRSCLLRREGEGITSSMIRAILEIIVGGVASTPDDVRTYASCTLLVASLKDNEQGSEK
NEDGVQNGAIEACVAWLLQNELIQVSGPSDGVKAEVYCPTHLGSATLSSSLSPMEALEIF
ADLQRAMKGFVLENDLHIVYLVTPVYEEWTTIDWYQFFCLWEKLPASMKRVAELVGIEEG
FLARSVKGKIIVKTEKQHRQMAIHKRFFTSLALLDLISEVPLKDITKKYGCSRGQLQSLQ
QSAATYAGMVTVFSNRLGWHNMEQLLSQFQSRLTFGVHRELCDLVRVSLLNAQRARALYN
TGFITVADLAKANPADVETALKTTVPFKSLRRAVDEDEEAAEERRNTRCIWMAGMKHVTE
NEAASLIVEEARTLLQQDLAVMGVQWNPDSYLDSESSSSMISSESELEDRKYRLSREGSF
ETLKAFNKERYGLHPNSQSGTSAKIEKGNKRLLGASTPKGRLQSEAQIDQIQTEEGNIDV
IVQSARKRPHLSKDKENMEFTSKRKSKAGFRETSQESPTEEGKRPTLSFVPTKTSAVCRP
RRIMGGSLNQNRNCSRALKQHRSLLEESGRQITGIKGPPLSRHSNSESKSFPDGSNKELT
EKGSLVHKDKISGSFHERYPLIGSKEKMEGLLMEPSVTNECKPKEKTICQASRDFIMRDA
ATVRMETSDTVGGLMIPSRELKNENIGAKDSKVHAGKKYAKRISGKQQMILDTDLCNEIV
SSSAKTHVSDGAHKQKTVCYEPKSCLFPIQSKSKHSSESPNGVLFKSGGVGKAADNQPED
FLRDSTIKSRAVCIAKSSKNGYAHDLSLGYGYFEDSFQLDTQTDRIIQQQVASEIAGHQG
AKGTELAAIAVQKTFTKLPCDNAFQTESVADKNLVAAFREMDSSGLVTTLGMKQPTDLCC
SAKTLGSVSSCLQSAVKFPDAALCLRGNDFSVTDSQLRSFLQGYLTQPSVKESVCLGLQN
GAPVSNGQNLHIIHVQVECHPVPETSLNTSNSLLFEDSFGDVNDPSGIRAGEAEGVETRE
QGILPFPPNTVSSSLVGCLHQQSWGPIQDVWSINQVEQQQPPQCNDASLTFSEIDSFQLA
EAFDNVSSPPFQGDLPSAALVEPELRKSIAQEDSGPMDIKGDKSVRPQKAQQNVKKPPNS
IVWSEHSFELSPGLQEILDKWPSPSGNKPASSSPSIPGSKEKLVLSNCSQEQGAVFEFGC
GQKKPLPLCQGLENYFTGRESNRGALEQKPNCSPKFLKGSSRKRDPQPGISNGLIPPTPP
MEPAPKSFGTSSLKSRKKKDVILMNEGPFCQVLQNGIPVSDQQIETLQFNPENGGPLEND
PVKEDSVIDQDFSLQLSQDVLPLISCSAESFTIIDVASDMDLFQTFIQEWRNKNRFSISV
ACERTKRLLSPRSTIGGRFKQVRSPQQIQVKDDGFPIKGCEDTLIVGLAVCWGGKDAYYV
SLQQKADDQAEVSASLAPPALDQNLSVTERLCHLQSCLQKEPEGKHCLVMYDFIQHYKTL
LMACGISLEGSFEDPKVACWLLDPGSKERTLHNMVTSFLPHELPLLEGIGTGQGVQSLGL
SASADHSGRYRAAVESVLIFGIMNQLNTLLQKENLTDAFCKVEMPTQYCLALLELNGIGF
STVACETQKHIMQAKLNEIETQAYQLAGHSFSLTSPDDIAEVLFLELKLPNGDVKAQGNK
KTLGYTRRCTTKGHRIRLGKQFSTTKDVLEKLKTLHPLPGLILEWRRITNAMTKVVFPLQ
REKHLNSLLGMERIYPISQTHTATGRISFAEPNIQNVPKDFEIEMPTLVEESPPSQARRN
VSALPGARSRKHHSILPQGSNSVAEEGPKGRGMPFSVSMRHAFVPFPGGLILAADYSQVE
LRILAHLSGDRRLIQALNSGADVFKSIAAEWKMIDPEAVRDDTRQQAKQICYGIIYGIGA
KSLGEQMGVEENDAASYIDSFKSRYKGIQKFLRETVNNCSRDGFVKTILGRRRYLPAIRD
PNPYSKAHAERQAVNTTVQGSAADLVKTATVNIQRRLEAFPSTIKSHGHLESSFQMDRAG
RLERRRNRRMLHPITGGFFILQLHDELLYEVAEDNVIQVAQIVKHEMENAMKLSVKLNVK
VRIGPSWGGLQDLEL
NT seq 7788 nt   +upstreamnt  +downstreamnt
atggcggcgcggtcgcttactccgccgccgccccgccggcctgtgctcagccccaccggg
cccagcccctcagggcaatgccaacggatgaacattcctgaggaccaagcagacaagttg
cttctagcaagctggggccttcccaaagcagtcctggagaaataccacagcctgggagtt
gtgcatatgtttgaatggcaggcagagtgcctgatgcttgggcaagtcctggaggggaag
aacctcgtttactcagctcctaccagtgctgggaaaacattggttgctgagctactcatt
ttgaagagagtcttggagacccataagaaagctttgttcattctcccatttgtctctgtg
gccaaagagaaaaagtattatcttcaggctttgtttcaagaggtgggtgtacgggttgaa
ggctatatgggaaacacctccccagctggacgtttctctaccttggatgttgctgtctgc
acgattgagagagctaatggtctaatcaacagactcatagaggaaaaccagatggattta
ctgggtatggtggttgtggatgagttgcacatgctgggagattctcaccggggttatctg
ctggaactcctgctgaccaaagttcgttttattacagaaaaggtcaccaaaagacaggca
aaggcaagcagtcctgcttttggtggaatacaaattgttggcatgagtgccaccctccct
aacttgcacctgctggcttcctggcttaatgctgagctgtaccacactgattttcgccct
gtgcccctcatggaatgggtgaaaattggcagcaatatttatgactcgtcaatgaatcta
gtgcgggaatttcagcccatgctgcaactgaagggagatgaggaccatgttgtaagcctg
tgctatgagactgttcgtgatggtcattcagtcctgctcttctgtccatccaagaactgg
tgtgagaagctggcagacatcatagctagagagttctgcaacctgcagctgtctgagaga
aaaacctcaaaccttccaccaatccccttgaacaaagaggcaatagaggaggtgatggac
cagctaagacaatcactctcgggtctggactctgtgctccagcgaactttaccatgggga
gtagcatttcatcatgcaggtcttacctttgatgaacgggatgtcattgaaggggccttt
cgccagggactgattcgagtcctggcagcaacttctacactttcttctggggtgaatttg
cctgcacgccgggtaattatccgaactcctgtgtttggtggcaaactcctggacattctg
gcttacaagcagatggctgggagggctggcagaaaaggagcagacacagtgggtgagagc
attctagtgtgcaagccctcagagaggtctaaaggcattgctctactgcagggatccctc
aagcctgtccgcagctgcttgctcagaagagagggggaaggaattacttctagcatgata
cgagcaatccttgagatcatcgtgggtggagtggccagcactccagatgatgtccggacc
tatgcttcctgtacgcttcttgttgccagtttgaaagataacgagcaggggagtgagaaa
aatgaggacggagttcagaatggagctatcgaggcttgtgtggcatggctgctgcagaat
gaattaatccaggtttcgggccctagtgatggagtgaaagcagaggtctattgcccaacg
catcttggctctgctactctttcctcttctctttcaccaatggaagccctggaaattttt
gctgacctccagagagctatgaaggggtttgtcctggagaatgacctgcacattgtctat
ttggtcactcctgtgtatgaggagtggaccacaattgactggtaccagtttttctgcctg
tgggagaagctgcctgcttcaatgaagcgagttgctgagctggtgggaattgaagaaggc
ttccttgcacgctctgtaaagggtaaaatcatagtcaaaacagagaaacagcaccgacaa
atggctatccacaagaggtttttcaccagcctggcactactggatttaatcagcgaggtt
cccttaaaagatattaccaaaaaatatggctgtagccgtggccagcttcagtccttacaa
cagtctgctgccacctacgcaggaatggtaacagttttctctaatcggctgggctggcac
aacatggaacagttgctctcccagtttcagagccgcctcacctttggtgtccatagggag
ctgtgtgacctggttcgcgtgtctctgctgaatgcgcagcgtgccagagctctttataac
actggcttcattactgtggctgacctggcgaaagcaaatcctgctgatgtggaaactgcc
ctgaagactacagtgccattcaaaagccttcgtagggcggtggatgaagacgaagaggca
gctgaggagcgcaggaacactcgctgcatctggatggctggaatgaagcatgtcactgaa
aatgaagctgcctccctcattgtggaggaggctaggacgctcctgcaacaggacttggct
gtgatgggagtacagtggaacccagattcttacctggactctgagtcatcctcttccatg
atcagcagcgagtcagagctggaggacagaaaatacagactgagcagggaggggtcattt
gagaccctaaaagcatttaacaaggaaagatatggacttcaccccaactctcagtctggg
acttcagcaaagattgaaaagggaaataaaaggttgctaggtgccagtaccccaaagggc
aggctccagagcgaggcccagatagatcagattcaaacagaggaaggaaacattgatgtc
attgtacagagtgctagaaaacgaccacatctgagcaaagataaagaaaacatggaattt
acttccaagagaaaaagcaaggcaggcttcagggaaacaagtcaagaatcccctactgaa
gaaggcaaaagaccaaccttgagctttgttccaacaaaaacttctgctgtatgtaggcca
aggagaataatgggtggaagcttaaatcaaaatagaaactgcagcagggctttgaagcag
cataggtcactgcttgaagagtcagggaggcaaataacaggtataaaagggccccctctt
tccagacatagcaattctgaaagtaaatcctttccagatggaagtaataaggaactgaca
gaaaaaggatcgttggttcacaaggacaaaatctcaggatcttttcatgaacgttatcca
cttataggaagcaaagagaaaatggaaggactgcttatggagccttctgttacgaatgaa
tgcaagcctaaagaaaaaacaatttgtcaggcatctagggattttataatgagggatgct
gcaactgtgagaatggagacaagtgacactgtgggaggcctgatgatacctagtagggag
ttgaaaaatgagaatattggtgccaaagacagtaaagttcatgctggaaaaaaatatgct
aaacggatatctggaaaacagcaaatgattctagatacagacctctgtaatgaaatagtc
agcagttctgcaaaaacacatgtgagtgatggtgcacacaagcagaaaactgtttgttat
gaacctaaatcctgccttttcccaattcaaagcaaaagcaaacatagcagcgaaagtccc
aatggcgtgttgttcaagagtggaggtgtgggtaaagctgctgataatcagcctgaggat
tttttgagagactccacaataaaatccagagctgtttgtattgcaaaaagtagcaaaaat
ggttatgcccacgatctgtccttgggctatggatactttgaggacagcttccagttggat
actcagacggataggataatacagcagcaggtggcatctgaaattgcaggacatcaggga
gcgaaaggcacagagctggcagccattgctgtgcagaaaaccttcacaaaactcccctgt
gataatgcttttcaaactgagagtgtcgctgataaaaacctagttgcggcatttagagag
atggactcttcaggtcttgtgacaacacttggtatgaaacagcccaccgatctatgttgc
agtgctaaaactttgggctctgtgagctcttgtttacagtctgcagtgaaattcccagat
gctgcactttgccttagaggaaatgatttttctgtcactgactcccagctacgcagcttt
ttacaaggttacctaacccaaccttcagtgaaggagagtgtctgtctaggtcttcagaat
ggagcccccgtctccaatggccagaatctacacatcatacatgtacaggtagaatgtcac
cctgttcctgaaactagtctcaatacaagcaatagtttgctgtttgaagatagtttcggt
gatgtcaatgacccttctggtattcgtgcaggtgaagctgaaggggtggaaaccagggaa
caggggattctaccctttcctcctaacaccgtttctagctctcttgttggctgtctccat
cagcagagctgggggcctattcaggatgtatggagtataaatcaggttgagcagcagcag
ccaccacagtgtaatgacgcgtctcttacgttctctgaaattgattctttccagttggct
gaagcttttgacaatgtgagctcacctccttttcaaggagacttgccatcagcagctctt
gttgagccagaactaagaaaatctattgctcaggaggactccggaccaatggacataaaa
ggagataaaagtgtaagaccccagaaagcccagcaaaatgtaaaaaaaccccccaattct
atagtatggagcgaacattcatttgagttaagcccagggttgcaagaaattctagacaag
tggcctagcccttcaggcaataaacctgcttcatcgagtccaagcatccctggctcaaag
gaaaaattagttctttcaaactgcagccaagagcaaggtgcagtgtttgaatttggctgt
ggtcagaaaaagccattacccctttgccagggtttagagaactatttcacaggtagagag
agcaataggggagccttggaacaaaaaccaaattgttcccctaagtttctcaagggaagc
agcaggaagcgtgatcctcagccaggtattagcaatgggcttattcctccaacgccgcct
atggagcctgcaccgaagagttttggcacgtcctctctgaagtctaggaaaaagaaagat
gtcatcctcatgaatgaaggcccattctgtcaggtgctgcagaatggcatacctgtttca
gaccagcaaatagaaacactacagtttaatccagaaaatggaggcccacttgagaatgac
cctgtaaaagaggattctgttatagaccaggacttttcactgcagttatctcaagatgtt
ttgccacttatttcatgcagtgctgaaagtttcactatcattgatgtggcaagtgacatg
gatctcttccagaccttcatccaagaatggaggaacaaaaatagattttccatctcagtg
gcttgcgaaagaacaaaacgtctcttgtcccccagatcaactataggcggcagattcaaa
caagtaagatctccccagcagatccaggttaaagatgatggattccctatcaaaggctgt
gaagataccttgatagttgggctggcagtgtgctggggtggaaaggatgcctactatgtc
tcactgcagcaaaaggcagacgatcaggctgaagtcagtgccagtttggcaccccctgct
ttggatcagaacctatctgtcaccgagagactgtgtcatctccagtcctgcttgcagaaa
gagcctgagggaaagcactgtctggttatgtacgacttcatccaacactacaagaccctg
ctaatggcctgtggcatctccctggaaggaagctttgaggacccaaaggtagcatgttgg
ctgctggatcctggttctaaagaacgtactcttcacaacatggttaccagctttctccct
catgaactccccctgcttgaaggaataggaactggccaaggggtgcagagcttggggctt
agtgccagtgctgatcactctgggcggtacagagcagctgtagagtctgtgctcatcttt
ggcatcatgaatcagcttaatacactgttacagaaggaaaacctaacagatgctttctgc
aaagtggagatgcctacacaatattgcttggctctgctggagctgaatggaattggcttt
agcacagtggcatgtgagacccagaaacacatcatgcaagctaaactaaatgagattgag
acccaggcataccagctggcaggccacagcttctccctgaccagccctgatgacattgca
gaggtcttgtttttggaactgaagttgccaaatggagatgtgaaagctcaagggaataag
aaaactcttggttacacaagaagatgcactactaaaggacaccggatcaggctgggcaag
cagttcagtacaaccaaggatgttctggagaaattaaagactttacatccattaccaggc
ctgattctagaatggaggcgaatcactaatgcaatgaccaaggtggtgtttccactgcag
agggagaagcatttgaattctttactggggatggagaggatctatccaatctcccaaact
catacagctacaggtcgtataagctttgcagagccaaatatccagaatgttccaaaagat
tttgagattgaaatgccaaccctggttgaagagagcccaccttcccaagcacgaagaaat
gtctcagctcttcctggagccagaagtagaaagcatcacagtatcttgcctcagggctca
aactctgtggctgaagaggggccaaagggaagagggatgccattttccgtgagcatgaga
catgcttttgttcccttcccaggtggtttaatcttggctgctgattattcccaagttgaa
ctgaggatccttgctcatttgtctggtgaccgtcggctcattcaggccttgaacagtgga
gctgatgtcttcaagagtattgcagccgaatggaagatgattgatcctgaagctgttaga
gatgatactaggcagcaagcgaagcagatctgctatggaatcatctatggaataggagct
aaatctttaggagagcagatgggtgttgaggaaaatgatgctgctagctacattgactcc
ttcaaatctagatacaaagggattcagaagtttctgcgggagacggtgaacaactgcagc
agggatggttttgtgaagaccattctagggaggcgcagatacctgccagctatcagagac
cccaacccttatagcaaagctcatgcagagcggcaagctgtgaatacaactgttcagggt
tctgccgctgaccttgtcaaaacagctactgtgaacattcagaggcggcttgaagctttc
ccctccacaatcaagtcccatggacacctggagagctcttttcagatggacagggcagga
aggttagagaggaggagaaacagaaggatgttacaccccatcacgggaggtttcttcatc
ctccaactccatgatgaactcctctatgaggttgcagaagataatgtaattcaggtagct
cagattgtcaagcatgagatggagaacgccatgaagctttcagtgaaactgaacgttaaa
gtgaggattgggcccagctggggaggccttcaggacctggagctgtag

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