Alligator mississippiensis (American alligator): 102566411
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Entry
102566411 CDS
T03087
Symbol
TCOF1
Name
(RefSeq) treacle ribosome biogenesis factor 1
KO
K14562
Treacher Collins syndrome protein
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102566411 (TCOF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amj03009
]
102566411 (TCOF1)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
90S particles
Other 90S particles
102566411 (TCOF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Treacle
LexA_DNA_bind
Motif
Other DBs
NCBI-GeneID:
102566411
NCBI-ProteinID:
XP_019333941
LinkDB
All DBs
Position
Un
AA seq
1060 aa
AA seq
DB search
GPHQRELLAFIHHHLRQAGFARAARELQRQLGQKEFPSLPTSLEEIFTHWKKAPPNTKKR
KAADGAGAVLEKKIRVPDPVSSSESSEEEEGTAAKAATAATPVIPNSAVKTESSEDESSS
SDDSAVAGRGVEVKPALAGGKATNSVQHATPNKASTPAGRPGAAATSRSKANKLKPDAPA
VALTPAKAGQKKAAPGKPGPVAATQARGAQSKAAATAKATESSETSDSSESEDEKPGAQL
PAPKIELKPTAAEAKSSEDSSDETSSEEEHKPPAALVKPAVKAAQTNATLTKSTPVTPAS
TTKSPGKGSALSQRKPAAVATSQAKSASVKLTSPAQAAGSAKSDDASESSDSSDSEDEAP
ASTAQTKSPAKSLQASLTPAKSAPAALLSSKATPALAKQTPKPAVLNQAKPVPGKNNTPT
KAAVSTKPQDSSESSDDSDSEDEAPPVPISQKAGGVKRLPAPLASPSKLGQTAKAGTPVR
ATGSTLTGKGSESESSGSSDSEAEETPAALKQPLKGIMKTGAAALPTSSKKAQPPATPLP
KAQGAAESSDDSSEESDLEEDTLTLAQKLVQAKPKPAAAAPAAKTANTVAVKASTSRKGA
NAAAPSPVKAAVTLYQAAETSSSGSSESEEEAKATSQPLLPSCLKPGTPFGKAATPAKKG
PQGNAAPPKSTSARGKGPVATPGKAVLPAADKAKPSPVAPPGANKGKDSSDSSDSSESEE
EETAQPLPKPGAPQKPGRINEAESSSSESSEDEEQPSQSLLAGYPGLMKATVTSEVQKAG
KAAAVAAPAPADALGKAAQADISASDSSSDSDTDVEKTPAPQKVGGKPLSSSGQEPITPK
VASGKAAAAGKGGHGGAILKPALAKKALAAPQNDSALKGTPTTMSPYALLSVSPSDGESS
KSESEDEATTAAKVPAGPASGEPEGKKTASKQKAKGAPGKAPKTPQSGDKENKKQKKPSL
KRKLEAKDGGLGATGAPKEKKRKKQSGLEPPKKKSKRADGAKKSLGSKEKKKSSKKKKAA
KDKKKKSKKSSGLELGADGSSVHKKKKKKKKKTSELAGSL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
gggccgcaccagcgcgagctcctcgccttcatccaccaccacctgcgccaggccggcttc
gcccgcgccgcccgcgagctccagcgccagctcggacagaaagagtttccttcgctgccg
acctctctcgaggagatcttcacccactggaagaaggctcccccaaacaccaagaagcga
aaggcagctgatggggcaggagccgttctggagaagaagatccgcgttccggaccccgtg
agcagctctgaaagctcggaggaggaggaagggacggcggcgaaagctgcgacggctgcc
acaccggttatccccaactccgcagtgaagacagagagcagcgaggatgaatcctcctct
tcagacgacagtgctgtggctggaaggggagtcgaggtgaaacctgctcttgcaggtggc
aaggctacgaactctgtgcaacacgccacccccaacaaagccagcacccctgcgggtaga
ccgggggctgcagccaccagtcggagcaaagccaacaagctaaaacctgatgcgccagct
gttgccttgactccagccaaagctgggcagaagaaagctgctcctggtaagccagggccc
gttgcagcaactcaggccagaggtgcccagagcaaagcagcggcaacagcaaaagcaaca
gagagctccgagaccagcgactcatcggagagtgaggacgagaagccaggagcacagctc
ccagcccccaaaatcgagctgaagccgaccgcagcggaggcaaaaagcagcgaggactcc
agcgacgagacatcctctgaagaggaacacaagcccccggccgccctggtgaaaccagct
gtgaaagcagcacagaccaatgcaactctgacgaaaagcacgcccgtcactccagcgtca
accacaaagagcccagggaaagggtccgccctgtctcagcggaagcccgcagctgttgca
acaagccaggccaaatcggcatctgtgaagctcacgagtcctgcacaagctgctgggagc
gcaaagtcagacgatgcttcagagagcagcgactcgtccgacagcgaggacgaggcaccc
gcatccaccgcacagaccaaatcgcctgcaaaatctctgcaggccagcctgacgccggcg
aaaagtgcgccagcggctctgctgtccagcaaggccactccagccctggcaaagcaaaca
cctaaaccagctgtactaaaccaggccaaaccagtgcctgggaagaacaacacccctaca
aaggctgctgtgagcacgaagccccaagatagttcagagagcagcgatgattcagacagc
gaggatgaggctccccctgtgccgataagccagaaggcgggcggggtcaagaggctgcca
gcaccgctcgcgtcccccagcaagctcggccagactgcgaaagccgggactcctgtgaga
gccactggaagcaccttgacgggcaaaggctccgagagtgagagcagtggttcgtcagac
agtgaggcggaagagacccccgcggctctgaaacagcctctgaaaggcataatgaagacg
ggtgctgcagcactgccaaccagtagtaagaaggcccagcctcctgcaacacctctcccg
aaagcccaaggggctgcagagagcagcgacgattccagcgaggagtctgacttggaggaa
gacacgctgaccttggcgcagaaactggttcaggcgaaacccaaaccagcagcggctgcc
ccagcagcgaagacggcaaacaccgtggctgtgaaagccagcacctcgcggaaaggggca
aacgcagcagcccccagccctgtaaaggccgccgtgacgctctaccaagcagcagagacc
tcgagctcgggttcctcggagagcgaggaggaagcgaaggccacgagccagccccttctc
ccctcctgcttgaagccagggactcctttcggtaaagcagccacccctgccaagaagggt
cctcaaggaaacgctgccccaccaaagagcacgtccgccaggggcaaaggccctgttgca
accccaggaaaagcagttctccccgctgcagacaaggccaaaccgagcccggttgccccc
cccggggccaacaaaggaaaggatagctcggacagcagcgactcctcggagagcgaggag
gaggaaacagcccagccgctcccaaagcctggcgcaccccagaagccggggaggataaat
gaagccgagagctcatcctctgagtccagcgaggatgaggagcagccttcacagtccctc
ctagcagggtatcccggcctgatgaaagccaccgtgacttcagaagtacagaaggcaggg
aaagcggctgcggttgcggctccagctccagctgatgcccttgggaaggcagcccaggct
gacatctccgcgagcgacagcagcagcgactcggacacagatgtcgagaagaccccggcc
ccacagaaagtgggaggaaagccgctgtcgtcttctgggcaagaacctatcacgccaaag
gtggcttcgggcaaggcagctgcagcagggaaagggggccatggaggtgccattttgaaa
cctgcccttgccaagaaagccctggcagcaccgcaaaacgacagcgctttgaaggggacg
ccaacaaccatgtccccctatgccttgctgtctgtatccccctcagatggggagagctcc
aaaagcgagagcgaagacgaggctaccacagccgccaaggtcccggctggcccagcttca
ggggagccggaggggaagaagacagcgagcaaacagaaagccaagggggcaccaggcaag
gctccgaaaacaccccagagcggtgacaaggagaataagaaacagaagaaaccctcactg
aagcggaagctggaagcgaaggatggaggccttggtgccacgggcgcgcccaaggagaag
aagcgaaagaagcaaagcggcctcgaaccacccaagaagaagagcaaaagggcagatggt
gccaagaagtcactgggcagcaaggagaaaaagaaatccagcaaaaaaaagaaggctgca
aaagacaagaagaagaaaagcaagaagtcttctgggctggagctaggtgcagatggctct
tctgtccacaagaagaagaaaaagaagaagaagaaaacctctgagctggcgggatccttg
tga
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integrated database retrieval system
