Alligator mississippiensis (American alligator): 102567395
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Entry
102567395 CDS
T03087
Symbol
DDX5
Name
(RefSeq) DEAD-box helicase 5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102567395 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102567395 (DDX5)
03009 Ribosome biogenesis [BR:
amj03009
]
102567395 (DDX5)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102567395 (DDX5)
Spliceosome [BR:
amj03041
]
Complex A
U1 snRNP components
U1 related factors
102567395 (DDX5)
Complex B
102567395 (DDX5)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
Pre-60S particles
Helicases
102567395 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
102567395
NCBI-ProteinID:
XP_006271274
UniProt:
A0A151N2G6
LinkDB
All DBs
Position
Un
AA seq
597 aa
AA seq
DB search
MPGFGAPRFGGSRGGLLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQE
VEQYRASKEITVKGHTCPKPLINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGL
DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSR
ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADR
MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHN
ILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIH
GDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT
ARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSRGDRRDRYS
AGKRGGFNSFSRERENFERTYGAVGKRDFGAKAQNGAYSAQSFSNGTPFGNGFAAAGMQA
SFRAGNPTAGAYQNGYDQQYGSNMANMHNGMNQQQYAYPATGTAPMIGYPMPASYSQ
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtttggagcccctcggtttggtgggagtcgaggcggcctcctctccgggaag
aaatttggaaacccgggggagaagcttaccaaaaagaaatggaacttggatgaactgccc
aaatttgagaagaatttttaccaagagcatcctgatgtagttcggcgtactgcacaagag
gttgaacaatacagagcaagcaaagaaattacagttaagggccatacttgtccaaaacca
ctcataaacttttacgaagctaactttcctgcaaatgttatggaggtaattcagaggcag
aattttactgaaccaactgctattcaagcccagggatggcctgttgccttgagtggactg
gatatggttggagtagcacagactggatcggggaaaacgctgtcttacctgttgcctgcc
atagtgcacataaatcatcagccattcctagagcgtggagatggacctatttgtctggtg
ctggcaccaactcgagaactggctcaacaggtgcagcaagtagctgctgagtatagtaga
gcatgtcgtttgaagtccacatgtatttatgggggtgctccaaaaggaccacagatccgt
gacttggaaagaggtgtggaaatttgcattgccacgcctggaagactcatagacttctta
gaagctggaaagactaatctcaggaggtgcacttaccttgtacttgatgaagctgacaga
atgcttgacatgggatttgaacctcagatcagaaaaattgtagatcagataagacctgat
aggcaaaccctgatgtggagcgcaacatggcccaaggaagtcaggcagcttgctgaagac
ttcttgaaggaatatgtacatattaacattggggcactggagctaagcgcaaaccacaac
attcttcaaattgtagatgtatgtcacgatgtagagaaagacgacaaacttattcgatta
atggaagaaatcatgagtgagaaggagaacaaaaccattgtctttgtggaaaccaaaaga
cggtgtgatgaccttaccagaaaaatgaggagagatgggtggccagcaatgggtattcat
ggtgataagagtcaacaggagcgggattgggtactaaatgaattcaaacatggaaaagct
ccgatcctgattgccacagatgttgcatccagaggtctagatgtggaagatgtgaaattt
gtcatcaattatgactaccctaactcctcagaggactatatccaccgaattggacgaact
gcccgcagtaccaaaacaggcacagcatacacattttttactcctaataatataaagcaa
gtaaacgacctcatctctgtgcttcgggaggctaatcaagctatcaaccccaaattgctt
cagttgattgaagacagaggttcaggtcgttcccggggtgatcgacgtgacagatattct
gcgggcaaaaggggtggatttaatagttttagcagagaaagggagaacttcgaaagaaca
tatggtgcagtaggaaagagagacttcggagcaaaagctcaaaatggggcctacagtgct
caaagctttagtaatggaactccatttggaaacggttttgcagctgctggcatgcaggcg
agcttcagggctggtaatcctactgctggagcataccaaaatggctatgatcaacaatat
ggaagtaacatggcaaatatgcacaatggcatgaaccaacagcagtatgcgtatcctgcc
actggtactgctcctatgataggctacccgatgccagcaagctattctcaataa
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