Alligator mississippiensis (American alligator): 102568127
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Entry
102568127 CDS
T03087
Symbol
SNAPC4
Name
(RefSeq) small nuclear RNA activating complex polypeptide 4
KO
K09453
snRNA-activating protein complex subunit 4
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102568127 (SNAPC4)
03021 Transcription machinery [BR:
amj03021
]
102568127 (SNAPC4)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
102568127 (SNAPC4)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
102568127 (SNAPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
102568127
NCBI-ProteinID:
XP_006278617
LinkDB
All DBs
Position
Un
AA seq
1598 aa
AA seq
DB search
MAQRAGLEPGPSGARAGGDPRPAAMSPADLQAQREKIQREIAELEELERSLDPGAALSLA
LAQPGSGSDTDDLDDDDDDSDTSLEMEVGNGKDSSGDDDDDIESSLPNDPETCLEMNLVY
QNIIQEKINEVADLIAQNKGQQAEIMLEVGVQKTTRAADGRSLPSNLFLGHFRKPYFKDK
ASGIGPPANEDTREKMAQGIKSFDELQVKKWKSHEKELLSSSIISDRLQRLLQPKLLKHE
YLNQKLEKAKTAMDRKILEKQIKEAEREIDTTNQIPHRELLGNRLDEHDWEKISKINFDG
TRNPGELRKFWQNWEHPSINKEEWSEEEIEKLKKITAKHDSQDWQTIAQELGTNRSAFQC
LQKYQAYNKDFKRNEWTKEEDQMLKQLVQEMRVGRHIPYRRIAYYMEGRDSAQLIYRWTK
CVDPSLRRGTWTPEEDALLLAAVKKYGERDWYKIRELVPGRNDAQCRDRYLYALHADLKK
GRWSCQEEEKLIELIQKYGVGCWSKIASELPHRTPTQCLSKWKIMIGTQPRGQCKKKSRL
KHGYTRRQSSSSSESESSSSSDSELELMDSSDGDAEKPQFTVPALDLWVPVRTNAAKRPA
ASAGSSKTNDGKGSSKQAPKASRGKEQAEASDGQGEEQASGSSAEFSTILKGMAYPYSTD
ISVKDPTEVVNKASESGRKVIMLSLEDVRRVIRNNTYLLRQRSQLPKKRPGGIPSMESGT
WSLDLPVNEMLEALKDNSQKNRRRQKELMQRQVYDRRLLMAVTPWVGNVILPYDFGVEKQ
PSVQTKADVIQKRLQSVTLSSTPLFTLFIQFFQVNTNGCMKVIRERRLKQTELFRAVMTN
AQKPPQVAQCLPGQEVPNKPPRKPVAAEATPDTGAVPKKKSAPPAVASTAPVPAVLEGPV
QKQNLRPQRQLPLLKPKPKSVSELLQDKRLRESRAKKAVQRTMILAPQVLVPSSAILQPV
IPQAPGGSKPATAMPLGDVSTPPQPAPTLGPTFLSLLVSAPPVPQSAPSSSSSQKVKKRS
KRKRNEDNPGGASEEEASQDKAAKAEGPSLPQGCKKAQVLGGSSMPLVLQSQAFMPHQIA
VLQSPPVTLSPAGVAAGVQNVPHSVLATSAPAPGSVQQSPVSLVPAVVTPQSSTHLVPSN
LVPITWVMTPQGLIPARVQTLVGLQNQKMLSVALESQASSAERTKVAPLDLTVSQASSRP
SSTPPAGSAATEVPSLPVAEGASPVIATGSSPSAHSASEPQQSLLLPAPVPDLVRSADSS
TKQGAVLAALPADSSALRAAPTPVPLRDPPAGTQHAHSLCPSSPAGQAESSSCIVINTLE
NGSNVPVLQTDQLPSSNVPTGSASGIAALATKDVPVALEPSDTLPQLSPPRGEKSPLDYS
LITLEGEASVKEWLKETPSVPVSNGSNKLPYLPPFICNLKTLSRLLLQKTTLEQNALALV
SAGKSQGGDTKADLRPIQELVRQKLGGNPAYLMLKARFLAAFTLPAVLATLPPPKVTTTL
SKRRPSREGDGELSLTEEELAEEEICQEPATEESCQEPTEGPSNGTEGPALGGEDANLPT
QDNGAGETAAVSVPEPETDVKDGLRRTRRTTRLRKRRM
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atggcccagcgcgcggggctggagccggggcctagcggggctagggccgggggggacccg
cgtcccgctgccatgtcgcccgcagacctgcaggcgcagcgggagaagatccagcgggag
atcgcggagctggaggagctggagcgcagcctggaccccggcgccgccctcagcctggcc
ctggcgcagcccggcagcggctccgacacggacgacctcgacgatgacgacgacgactcc
gacacgtcgcttgagatggaagtgggaaacggaaaggacagcagcggcgatgatgacgat
gacatcgagagctctctccccaacgaccccgagacgtgtttggagatgaacctggtgtac
cagaacatcattcaggagaagatcaacgaagtcgccgatctgattgcacaaaacaaaggg
cagcaggcggaaatcatgttggaggttggcgtgcaaaaaaccaccagggcagcagatgga
agaagcttgccatcaaacctgtttctgggtcacttcaggaagccgtactttaaagataaa
gcgtcaggaattggtccgcctgccaatgaagatacccgggaaaagatggcacaaggcatt
aagtcctttgatgaactgcaagtaaagaaatggaagagccatgagaaggaattgctgagc
agctccatcataagcgatcgcttgcagcgcctgcttcagcccaagctattgaagcatgaa
tacttgaatcagaagctagagaaagccaagactgccatggacaggaagattctggagaag
cagatcaaagaagcggagcgtgaaatcgataccactaaccaaattcctcacagagagctg
ttaggaaaccgactggatgagcacgactgggagaagatttcaaaaatcaattttgatggc
acacgcaacccaggagagctgaggaaattttggcagaactgggagcatccaagcatcaat
aaggaggagtggagtgaggaggagatagagaagttgaagaaaataactgctaaacatgat
agtcaggactggcaaaccatcgcccaggagctggggaccaaccgaagtgcattccagtgc
ctgcagaagtaccaggcctacaacaaagacttcaagaggaatgagtggaccaaggaagag
gaccagatgctcaagcaacttgtccaagaaatgagggttggaaggcacatcccttacagg
agaattgcttattacatggaagggagagactctgcacaactgatttaccgctggaccaag
tgtgtggacccgagcctgagaagaggaacatggacgccagaggaggatgctctgttgctg
gcagcagtcaagaagtatggagagcgcgactggtataaaattcgggagctggtgcctgga
aggaacgatgcccagtgcagagacaggtatttatatgcactgcacgctgacttaaagaaa
ggcaggtggagttgccaggaagaagagaagctaattgaactaatacagaagtatggcgtg
ggatgctggagtaaaattgcatcggaattgccacacaggacacccacccagtgcctgagc
aagtggaagatcatgattgggacgcagcccagggggcagtgcaagaagaaaagccgcctg
aagcatgggtacacgcggaggcagagctccagctcgtccgagagcgagagcagcagcagc
agcgactcggagctggagctgatggacagctcagacggagacgcagagaagccacagttc
acggtgcccgctctcgacttgtgggtgccagtgaggaccaatgcagcaaagcgtccggct
gcatctgctggctcttccaagactaatgacggaaaggggtcttccaagcaagctccaaag
gcatcccgtggcaaggagcaagcagaggcttctgatggccaaggtgaagagcaagcctca
gggagttcggcagagttcagtaccattctgaagggcatggcatacccatattctacagac
ataagtgtcaaggacccaacagaggtggtgaacaaggcttctgaaagcgggaggaaagtg
ataatgctttccctggaagatgtgaggagggtgatacgaaacaatacttatcttttgaga
cagcggagccaactgccaaagaaacgccccggcggcattccaagtatggagtctggcacc
tggagcctggacctgcctgtcaatgaaatgctggaggcattgaaggacaactcgcagaag
aaccgacgccggcagaaagagctgatgcaaaggcaggtctacgaccggaggctgctgatg
gcggtaactccatgggtgggcaacgtcatcctgccatatgactttggtgttgagaagcag
ccgtctgttcagaccaaagctgatgtcattcaaaagcggctgcagtcagtcactctctcc
agcacccctcttttcacactgttcattcagttcttccaggttaacactaacggctgcatg
aaggtgatacgtgagaggaggctgaagcagacagagcttttccgggcagtgatgaccaat
gcacagaaaccaccgcaggtcgctcagtgcctcccaggtcaggaagtgccgaataaacct
cccaggaagccagtagctgcagaggccacacctgacacaggggctgtgcccaaaaagaag
tctgctcctccagcggtggcaagcacagctcctgtccctgccgttctggaaggtcctgtc
cagaagcagaacctgaggccacagaggcagctcccactactgaagccaaagcctaaatcg
gtctctgagctgctgcaggacaagcgtctgcgggagtctcgggccaagaaggctgtgcag
agaactatgatccttgcacctcaggtgttggtcccatcttctgccatccttcagccagtc
attcctcaggcgccaggagggagcaagcctgccacggccatgcccctcggggatgtgagc
accccaccacagccggcaccaactctgggtccaacgtttctgtcccttctggtttctgca
ccacctgtcccacagtcggccccaagctccagttcctcccagaaggtgaaaaaacggtcg
aagaggaagcggaacgaggacaacccaggaggcgcttctgaggaggaggcctcccaggac
aaagctgcaaaggcagaggggcccagcctgccccagggctgtaagaaggctcaggtgttg
gggggcagctccatgccattggtgctgcaaagccaggccttcatgccccaccagattgcg
gtgctgcagtcccctcctgtcacactgagccctgcaggggtggcagcaggtgtgcaaaac
gtccctcactcggtgcttgccactagtgccccggcacctggaagtgtccagcagagtcca
gtcagcttggtgcctgctgttgtgactccccaaagcagcacccacctggtccccagcaac
ctggtgcccatcacctgggtgatgacaccccagggcttgattcccgcaagagtgcagaca
ctcgtgggcttgcagaaccagaagatgctgtctgttgctcttgaaagccaggcctcctca
gcagagcgcaccaaagtagcccccttggacttgacagtgtcccaagcatcctccaggcct
agcagcacacctcctgctggcagcgcagccacggaagtgccaagcctgccagttgcagaa
ggggcatccccggtcattgccacgggttcgagcccctctgctcactctgcctcagagcca
cagcaaagcttgctgcttccagcccctgtccccgatcttgtgaggtctgcagactcctcc
acaaagcagggtgcggtgctggctgccctcccggctgactcctctgctctgcgtgctgcc
cccacgccagtgcctctccgtgaccccccagcaggcacccagcatgcccattcactctgc
ccttcgagccctgccggccaggctgagagcagtagctgcattgtaatcaacaccttggag
aatgggtcaaacgtgccagtgctgcagacagatcagcttccctccagcaacgtccccaca
gggagcgccagtggcatcgctgccctggccacaaaggacgtgcccgtggccttggagcct
agtgatactctcccccagctttctccccccaggggtgaaaagagccccttagactacagc
ctcatcactcttgagggtgaggcctcggtgaaggagtggctgaaggagaccccgagtgtc
ccggtgtccaatgggagcaataagctgccttatttgccacctttcatttgcaacctcaaa
accctctcccggctgctgctgcagaagacgacactggagcagaatgccttggccttggtg
tcagctgggaagagccagggtggggacaccaaagctgacctgcgccccatccaggagctg
gtaaggcaaaagctcggtggaaacccggcttatctgatgctgaaagccaggttcctggca
gccttcacccttcctgctgtcctggctaccctccccccgccaaaggtgaccacaaccctg
tccaagagaaggccgagccgggagggtgatggggagttgtcgctgactgaggaggagctg
gcggaggaggagatctgccaggagccggccacagaggagagctgccaggagccgactgag
gggccatccaatggcaccgagggcccagcactcgggggcgaggatgccaacctgcctact
caggacaacggagccggagagacggccgcagtgtcggtgccagagcctgagaccgacgtg
aaggatggccttcggcgaaccagaaggaccactcgtctcaggaaaaggaggatgtga
DBGET
integrated database retrieval system
