Alligator mississippiensis (American alligator): 102568239
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Entry
102568239 CDS
T03087
Symbol
CTCF
Name
(RefSeq) CCCTC-binding factor
KO
K23195
transcriptional repressor CTCF
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102568239 (CTCF)
03036 Chromosome and associated proteins [BR:
amj03036
]
102568239 (CTCF)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102568239 (CTCF)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102568239 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
102568239
NCBI-ProteinID:
XP_006266660
UniProt:
A0A151NJM4
LinkDB
All DBs
Position
Un
AA seq
735 aa
AA seq
DB search
MWTEEGEMEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDVCHIPPNQADGGEVVQD
VSSGVQMVMMEQLDPTLLQMKTEVMEGTVPQETEATVDDTQIITLQVVNMEEQPINIGEL
QLVQVPVPVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTLPLPEGFQVVKVGANG
EVETLEQGELQPQEDPNWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQ
EGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERP
HKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKC
SMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICH
ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCD
AVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFR
QKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHSDNCSGPDGAEGENGGEPNK
KGKRGRKRKMRSKKEDSSDSEENAEPDLDDNEEEEETAVEIEAEPEVEQVAPAPPPAKKR
RGRPPGKANQPKQPQPTAIIQVEDQNTGAIENIIVEVKKEPDAETVGEEEEAQPAVVEAP
NGDLTPEMILSMMDR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtggacagaggaaggtgaaatggaaggtgaggcagttgaggctattgtggaggagtct
gaaactttcattaagggaaaagaaagaaaaacctatcaaagacgccgtgaaggtggacag
gaggaggatgtttgtcatatcccacctaaccaagcagatgggggtgaagtagtgcaggat
gtcagtagtggtgtgcagatggtgatgatggaacagctggatccaacacttcttcaaatg
aagactgaagtaatggaaggcactgtgcctcaggaaacggaggctacagtggatgacaca
cagataataacacttcaggttgttaatatggaagaacagcctataaacattggtgagctt
cagcttgtccaagtacctgttccagtgactgtaccagttgccaccacttctgtggaagaa
cttcagggagcgtatgaaaatgaggtttcaaaaggaggcctacaagagggagagcctatg
atctgtcacacgctccctttaccagaaggtttccaagtagtgaaagtaggtgcaaatggt
gaggtggaaacactggagcaaggagaacttcagccacaggaagatcctaattggcagaaa
gatccagactatcagccaccagccaaaaaaacaaagaaaaccaaaaagagcaagcttcgt
tatactgaggaaggcaaagatgtggatgtgtctgtgtatgattttgaagaggagcagcaa
gagggtttgctgtctgaggtcaatgcagaaaaggtggtgggcaacatgaagccccctaaa
ccaacaaaaataaaaaagaaaggtgtaaaaaagacattccagtgcgagctgtgcagttat
acctgtccacgtcgttccaacttggaccggcacatgaaaagccacactgatgaaaggcca
cataagtgccatctctgtggcagagctttccggacagtcacgttgctgaggaaccacctc
aacactcacacaggtactcgtcctcacaagtgcccagactgcgacatggcctttgtgacc
agtggagagttggttcggcatcgccgttacaaacacactcatgagaaaccattcaaatgt
tcaatgtgtgactatgctagtgtggaggtcagcaagttgaaacgccacattcgctctcat
actggagagcgtccattccagtgtagcttgtgcagctatgccagcagagacacttacaaa
ctgaagaggcacatgagaacccactctggagagaagccatatgaatgttacatctgtcat
gctcgctttacccagagtggcaccatgaagatgcacattttgcaaaagcatacggagaat
gtggccaaatttcattgcccccactgtgatactgtcatagcaagaaagagtgacttgggt
gtccatttgcgaaagcagcattcctacattgagcagggcaagaaatgtcgctactgtgac
gctgtgttccatgagcgatatgctctcatccagcatcaaaagtctcacaagaatgagaaa
cgtttcaagtgtgaccagtgtgattatgcatgcagacaggagcggcacatgatcatgcac
aaacgtacccatactggagaaaagccttatgcctgtagccattgtgataaaaccttccga
cagaaacagctccttgatatgcacttcaaacgttaccatgaccccaactttgtccctgct
gcctttgtctgttcgaagtgtggtaaaacattcactcgcaggaacaccatggctagacat
tctgataactgttctggcccagatggtgcagaaggagagaatggaggggagccgaataag
aagggtaaacgtggaagaaaaagaaagatgcgatctaagaaggaagattcatctgacagt
gaagaaaatgctgagccagatctggatgacaatgaagaggaggaggagacggcagtagaa
attgaggctgaaccagaagtggagcaagtggcccctgcaccgcctcctgctaagaaacga
agaggaaggccaccaggcaaagccaaccaaccaaagcagccccagcctacagcaatcatt
caggttgaagaccagaacactggtgcaattgaaaacataatagttgaagtaaagaaagaa
cctgatgcagaaacagtaggagaagaggaggaagctcagcctgctgtagtggaagctccc
aatggagacctcactcctgagatgattctcagcatgatggaccggtga
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integrated database retrieval system
