Alligator mississippiensis (American alligator): 102568287
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Entry
102568287 CDS
T03087
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA decapping 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102568287 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102568287 (EDC4)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102568287 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102568287 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_HPS5
WDR55
Beta-prop_TEP1_2nd
Uteroglobin
PIN_8
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
102568287
NCBI-ProteinID:
XP_014454759
LinkDB
All DBs
Position
Un
AA seq
1403 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPGGSVNENQRPSSSYNGDLNGLLVPDPITTGDGASLA
KPMHRSVPLGTLQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRGATNGSAMVRVLSVSTAERTLLKGFTGSVADL
AFAHLNSNQLACLDEAGNLFVWRLAMVNGKIQEEILVNIKRPDGTPLNNFRRIIWCPFIP
DENEESSEEGSQILALLHEDRAEVWDLDIIRANDSSWPVEVTNIKEGFIVVKGHSTRLSE
GALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGKPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSSDIFSSMTVLPSLKVCLDLSAEYLI
LSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLLAEE
ENDSLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMAASIPSHGSHE
DFAFPDHLADLGTEGLGSEKGSIHGSQSDLRRISDLPVPADFLSLSNDAKPKLMTPDAFM
TPSTSLQQITVSPGSSVSSLTAVTAMSSTSVNDAAMSSHRPSEDLTLNPKMQLDTSITLS
SSGSSLQTSPRNHSVLIPGLPDKLTAKAPVPVAPGNPPLSLELKEVEPLVVPQASPTRER
SPDVISSASTAMSQDIPEIASETLQRSFAAAPTGLPAEVLEPNHHADSMASAASALHLLS
PRNRHNSEHSHHSLDMAPVEVDRLNTPSLLETALTQENASSDSVVSQPWPAAPDITRETR
NSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKV
SAQRLPVKDWKAKASPRASPKLKRKGKKEDGDVTQSPRSSDHQVTPEYQDELMSLLRNQQ
RELTELRQNQMELMRRLTDHLDAVQSSLMGHVERVVGSQQEQEQRRLDRALTEWQQRNEQ
LQDHLSQQLSQSMSTAVCNRLERTIREEMKKTVPQCISKSMDPVTGQLSNTIATKLTAVE
GTLKENVTKLVKSKNLTDTIARAAADALQGPIQSAYREAFQSIVLPAFEKSCQSMFQQIN
DTFKQGTQEYIQQLETHMKNKKVREQEARDPLLSQLRQLITTFQSTTEQLASTITASVHA
EVQHQLHIIVGNMQESILTQVQRVIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPSAH
LDFQSQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVL
LSLIQQLSSDLGTRTELKLSYLEEAVMHLDHSDPITRDHMGSVMSQVRQKLFQFLQAEPH
NSLGKAARRLMIMLQGLVTPSMT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccagcatcgacatcgaggacgcgacccagcacctgcgcgacatcctcaag
ctggaccggcccggaggttcagtgaatgaaaatcagcgaccatccagttcatacaatggg
gacctgaacgggctgctggtgccagaccccatcacaactggagatggagcttcattggct
aagccaatgcaccgcagtgttcctctgggaaccctgcaggagaagcaagtcatctgcctt
tctggagatgacagctctacctgcctcgtgatatcagcgaaagatgtggagatagtagcc
agtagtgattccagcatcaccagtaaggccagagggagcaacaaggtaaaaatccaaccg
gttgccagatacgattgggagcagaaatactactatggaaacctgatagcagtctcaaac
tcttacctggcatatgccatccgaggtgccactaatggctccgccatggtgcgtgtgctg
agtgtcagcacagctgagcgaaccttgctgaaaggattcacgggtagtgtggcagacttg
gctttcgcccatctcaactccaatcagctagcttgcctggatgaggctggcaacctcttt
gtctggcgcctagccatggttaatgggaaaatccaagaggagatcctggtgaacattaaa
cgacctgatggtaccccgttgaacaactttcggaggatcatatggtgccccttcattcca
gatgagaatgaggaaagcagtgaagaggggagccaaatactggcgctgctgcatgaggac
agggcagaggtttgggatctggacataatccgagccaatgatagctcttggccagtggag
gtcaccaacatcaaagagggcttcattgtggtgaaaggccacagcacgcgtctaagtgag
ggagcgctctctccagatggaacagttttggccacagcaagtcatgacggctatgtcaaa
ttctggcagatctacattgaaggacaggatgagccaaggtgcctccatgaatggaagcct
catgatgggaagcctctttcctgtctgctcttctgtgacaatcataaaaaacaagaccca
gaggttcctttctggagatttctcatcacaggtgcagatcagaatcgggaactgaagatg
tggtgcactgtgtcttggacctgtctgcagactgtccggttttcctctgatatcttcagt
tccatgaccgttcttccaagtttgaaggtctgcctggacctctctgctgaatacctgata
ctgagtgatgtgcagagaaaggtcttgtatgtgatggagctgatgcagaaccaggaagaa
ggtaaagcctacttcagctccatttcagagttcctcctcacccacccagtcctgagcttc
ggcatccaggcagtgagtcgctgccggctaagacacactgaggtcctgctagctgaagag
gaaaatgactcccttagtgtagaaggggctcagggggctggggctgttgaatccgcagca
ggtgtgctgatcaagctcttctgtgtccacaccaaggcccttcaggatgtacagatccga
ttccagcctcttcatagcccagatatggctgcatcaataccctcccatggctcccatgaa
gattttgcatttccagaccacttggctgacctgggcacagaagggctgggatcagagaag
ggatccatacatggttcccagtctgacttacggcgcatttcagacctgcctgtgcctgca
gactttctctctctctcaaatgatgccaaacccaagctaatgaccccagatgcattcatg
accccgagcacatctcttcagcagatcaccgtgtcacctggtagcagtgttagttccctg
actgcagtcacagccatgagcagcacttctgtcaatgatgctgccatgtccagccatagg
ccatctgaagacctgaccttgaacccaaagatgcagttggataccagcatcacactgagc
agcagtggtagcagcctccagaccagtcccagaaaccattctgttcttatccctggactc
cctgacaaactgactgccaaggcacctgtcccggttgcacctggaaatccacctctctct
ctagagctgaaggaagtggagccccttgtggtaccccaggcttctcccacccgtgagcgc
tccccagatgtaatttcttcagcctccactgctatgtctcaagatatcccagagattgcc
tcggagaccctgcaacgcagctttgcagcagccccaactgggctccctgcagaggtactg
gagcccaaccaccatgcagacagcatggcgtcagctgcttcggccttgcacttgctgtct
ccaagaaacaggcacaattccgagcacagccaccactccctggacatggcgcctgtggag
gtggacagactgaacactccctcattgctggagactgctttaactcaggaaaatgcttct
tctgacagtgttgtgagccagccgtggccagcagctcctgacatcaccagagaaaccagg
aacagcatggcagacagccctagggacgaggttgaagagaagcacaagagctcttcctat
cacagacacagctaccacctgctacagcatgacagccaggatgccagtgcagagcaaagt
gaccatgatgatgaagttgcaagtttggcttctacatcaggcggatttggtgccaaagta
tctgcacagaggctgcctgtgaaggactggaaagccaaggcatcccctcgggcttcccca
aagctaaagcggaagggcaagaaagaggacggggatgtgactcagtccccacgatcatct
gatcaccaggtgactcccgagtatcaggatgagctgatgtctctgctgaggaaccaacag
agagagctcactgagctacggcagaaccagatggagctgatgcggagactcactgatcac
ctggacgctgtgcagagctccctcatgggccacgtggagagagtagttggctctcagcaa
gagcaagagcagaggaggctagaccgagctctgactgaatggcagcagcggaacgagcag
ttacaggatcacctgtcccaacagctctctcagtccatgtctaccgctgtctgtaatcgc
ctggagaggaccattcgtgaagagatgaagaagacagtgccccagtgtatttccaaaagc
atggaccctgtcactggacagctgagtaacaccattgcaaccaaactcacagctgttgag
ggcacattgaaggagaatgtcactaagctggtgaaatcaaagaaccttacagataccatt
gcgagggcagctgcggatgccctgcagggacccatccagtcagcctacagggaggcgttc
cagagcatcgtgctgcctgcatttgagaagagctgccagtccatgttccagcagatcaat
gacacgttcaagcagggcacacaggaatatatccaacagctggagacccacatgaagaac
aaaaaggtgcgagaacaggaggcacgggaccccctgctgagccagctccgacagctgatc
accaccttccagagcaccacagagcagctggcttccaccatcacggccagtgtccatgct
gaagtgcagcatcagctgcatatcatcgtgggcaacatgcaggagtccattctgactcag
gtgcagcgggtcatcaagggggaggtgagcctggccatgaaggagcagcaagcagctgtc
acctcaagcatcatgcaggcaatgcgctcagcagcgggcacgcccatcccctctgctcac
ctggacttccagtctcagcaggctcacatcctgcagctgctgcaacagggccacctcaac
caagctttccagcaggctctcactgctgctgatctgaatctggtcctgtatgtttgtgag
actgtagatccacagcaagttttcgggcagcatccatgtccactgtcccaacctgtcctc
ctctctctcattcagcagctctcctcagatttgggtacccggactgaactgaaactgagt
tacctggaggaggcagtgatgcacctggatcacagtgaccccatcactcgagaccacatg
ggctctgtcatgagccaggtgcggcagaagctcttccagttcctacaggcagagccccac
aacagcttgggcaaggctgcccgccgcctcatgataatgcttcagggcttggtcacaccc
agcatgacctaa
DBGET
integrated database retrieval system
