Alligator mississippiensis (American alligator): 102568318
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Entry
102568318 CDS
T03087
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
amj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102568318 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102568318 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102568318 (SYMPK)
03019 Messenger RNA biogenesis [BR:
amj03019
]
102568318 (SYMPK)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102568318 (SYMPK)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102568318 (SYMPK)
U7-dependent histone pre-mRNA processing factors
102568318 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
INTS7_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
102568318
NCBI-ProteinID:
XP_019355065
LinkDB
All DBs
Position
Un
AA seq
730 aa
AA seq
DB search
HPCRLVGAGGRKKVFRLSDVVKPLSPAQMEKLKLDAGRRVLHAEKAVACSGAAQDRVRIV
AALATRLDVPPRAELLPYILEDVRGRLDLAFAWLYREYSARPAPPGAPDAYDRCLLGLLG
GLQEKPDQKDGLFTKVVLEAPLITEGALEVIRKYCEDESRTYLGMSTLRDLIFKRPARKF
QYLHVLLDLSSHEKDKVRQQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFG
ADKDTEVAAPWTEETIKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQPI
RGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFL
IPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIALHN
IDSAKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPR
LGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPPQLGAVFDKCPEL
REPLLAHVRSFTPHQQAHVPHSTMAILEASTKQEAEAKDVQPLEEEPEPPALPRGPQDAI
ALRLAQEKALKRQAEEEQQKLKAAAAAAVGAAPRAPPAPTPALPPEEPMELREEGAEAEP
PAIFISEDEGTGSAPTPARDATTAAPAKEPKGKEAAGTSDGAAGKTGTLVPEEPPASAAE
APAEPEAKES
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
catccctgcaggctggtgggtgcgggcgggcgcaagaaggttttccggctgagcgacgtg
gtcaagccactctcccctgcccagatggagaagctgaagctggatgcggggcgccgcgta
ctgcatgccgagaaggctgtggcctgcagcggggctgctcaggaccgggtgcggattgtg
gcggcgttggcaacgcggctggatgtgccaccacgggccgagctgctgccctacatcctg
gaggatgtgcgggggcgcctggacctggcctttgcttggctgtaccgcgagtacagcgcc
cgccccgcaccccctggcgcccccgacgcctacgaccgctgtctcctcggcctgctcggt
ggtctgcaagagaaacccgaccagaaggacggcctcttcaccaaggtggtgctggaggcg
ccactcatcacggagggtgccctcgaggtcatccgcaagtactgcgaggatgagagtcgc
acctacctgggcatgtccacgctgcgtgacctcatcttcaagcgaccggcccgcaagttt
cagtatctgcacgtcctgctggacctcagctcccacgagaaagacaaggtccggcagcaa
gcgctgctcttcatcaagcgtatgtatgaaaaggagcagctgcgggagtacgtggagaag
tttgccctcaactacctgcagctcctggtgcaccccaaccccccgtctgtgctctttggg
gccgacaaggacactgaggtggcagcaccctggacagaggagaccataaagcagtgcctc
tacctgtacctggccctgctgccccagaaccacaagctgatccatgaactggcatctgtc
tacaccgaggccatcgctgacatcaagcgcacggtgctgcgtgtcatcgagcagccgatc
cgtgggatgggaatgaactcgcctgagctgctgctgctggtggagaactgccccaagggt
gccgagacgctagtgacgcgctgcctgcacagcctgaccgacaaagtgccgccctcccct
gagctggtgaagcgggtccgtgacctctaccacaagcggctcccggacgtccggttcctc
atccctgtgctcaatggcctggagaagaaagaggtgatccaggccctgcccaagctcatc
aagctcaaccccatcgtggtgaaggaggtcttcaaccggctcctgggtacccagcatggt
gaggggaactcggccgtgtcgcccctgaaccccggggagctgctcatcgcgctgcacaac
atcgactcggccaagtgcgacatgaagtccatcatcaaagccaccaacctgtgcttcgcg
gagcgcaacgtgtacacgtcggaggtgctggccgtggtgatgcagcagctgatggagcag
agcccgctgcccatgctgctcatgcgcacggtcatccaggcactcaccatgtacccgcgg
ctcggcggcttcgtcatgaacatcctctcccgcctcatcatgaaacaggtgtggaagtac
cccaaggtgtgggaaggcttcatcaagtgctgccagcgcaccaagccccagtccttccag
gtcatcctgcagctgccgcccccccagctcggcgccgtcttcgacaagtgtcccgagctg
cgcgagccactgctggcccacgtccgctccttcaccccccaccagcaagcgcacgtgccc
cactccaccatggccatcctggaggccagcaccaagcaggaggctgaggccaaggacgtg
cagcccctggaggaggagcccgagcccccggccctgccgcgcggcccccaggacgccatc
gcgctgcgcctggcccaggagaaggcgctgaagcgccaggccgaggaggagcagcagaag
ctgaaggcggcggcagcggcagcagtgggtgctgccccccgcgcgccccctgcgcccacg
cctgcgctgccccccgaggagcccatggagctgcgggaggagggcgccgaggcggagccg
cctgccatcttcatcagcgaggacgagggcacgggcagcgccccaacccctgcgcgcgat
gccaccactgcggcccccgccaaggagcccaagggcaaggaggccgcgggcaccagcgac
ggagcggcaggcaagacgggcaccctggtgccggaggagccgcccgccagcgccgccgag
gccccggccgagcccgaggcgaaggagagctga
DBGET
integrated database retrieval system
