Alligator mississippiensis (American alligator): 102568381
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Entry
102568381 CDS
T03087
Symbol
COL22A1
Name
(RefSeq) collagen type XXII alpha 1 chain
KO
K16630
collagen type XXII alpha
Organism
amj
Alligator mississippiensis (American alligator)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102568381
NCBI-ProteinID:
XP_019337335
UniProt:
A0A151P817
LinkDB
All DBs
Position
Un
AA seq
1615 aa
AA seq
DB search
MSPLEREWVPFILILLTLVWGGERIQAQRAGCKNVHYDLVFLLDASSSVGKEDFEKVRQW
VSNLVETFEIGQDKTRVGVVRYSDRPTTEFDLGRYQTREEIKAAAKNIKYDGGNTNTGDA
LRYINTYSFSKEAGGRPSDRAIKKVAILLTDGRSQDYVLNPATAARKAGIRIFAVGVGEA
LKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNGGT
DEIPGFDLVDLFSVKDIFGLKDNGIQSSYIRLGSFPIVQKTEDVFPQGLPDEYAFVTTFK
FRKASRREDWYIWQIIDKYGIPQVSIRLDGDNKAVEYSAIGLTKDAVRVVFRSARVSDLF
DRNWHKIALSIQSKSVSLYIDCKLVQTLPIEDRENIDIQGKTVIGKRLYDSVPIDFDLQR
MVIYCDSRHAELETCCDIPSGPCQVTVITEAPPPEVRPTVGSEQIGHIKTLNCSCPAGEK
GERGPFGPEGPQGQKGESGSRGLPGQKGEKGELARGAYGGGEKGEKGEEGPRGFSGLKGE
KGEKGSLGSPGPPGREGAKGETGEPGQLGEIGLPGPEGPKGSEGKPGPPGIKGYVGAPGL
QGERGEKGTRGDKGERGFDGFPGKPGVEGKQGPKGSSGPPGAIGPTGEKGEPGLPGLPGS
AVQTEGLKGERGDPGPRGPQGLPGLPGPPGPAGPEGKHGAPGLQGQRGKKGDMGVSGVDG
LPGPQGPPGPPGSAGPRGIPGAPGLPGELGVSGKPGLPGPPGLPGKDGLNGLPGLLGQKG
EQGEKGQEGSSGQAGPKGDTGARGLPGLSGEQGEAGLPGLQGLPGPRGEKGNQGETGREG
LPGQQGEKGDVGSPGPPGLPGTTALFTPHPRIPGEPGPKGEKGDQGIGGEPGPAGAPGEQ
GLPGLAGLQGMKGQKGARGETGTPGETGAPGAEGPPGPRGLPGNVGVPGDVGPPGKDGQK
GEKGEPGRDGKAGGPGPAGEPGPAGVPGLPGKGKDGDRGDRGLPGLPGLIGHKGDRGAPG
LPGQPGDRGPPGIGVAGPPGPTGPPGDKGTLGSRGSPGVPGPQGPPGQDGLPGNPGERGP
PGKPGTSPLLTPEDINLLVKDVCTDCPPGPPGLAGIPGFKGDKGLRGPPGRDGLDGKTGA
TGPRGPPGPPGPDGLKGTKGDRGTTGEAGEKGEQGHHGMPGFLGPPGNPGPPGPDGVKGP
AGAPGIPGDIGKDGPPGPQGPPGLPGLQGIDGNDGKDGKPGSPGEPGKSGEPGLPGQEGA
RGLPGFKGQRGDMGPPGSRGEPGVAGPAGREGPPGKDGDAGLTGPQGPRGFRGQPGKSGS
PGPPGEPGPAGNPGPKGNKGENGSPGVPGFIGPRGPPGEPGEKGPPGKEGAAGKPGEHGS
NGDKGDPGVKGDKGPQGEKGSPGEPGIPGHKGHPGLMGPQGPPGDNGQTGPPGPPGQPGF
PGPRGEPPSLETLRRLIQEELGKQLDAKLAYLMAQMQPAQVKAPQGRPGPPGVPGKEGLP
GRPGPPGEPGRPGQTGSEGPPGPVGPKGERGTNGEKGEAGVGQRGEIGSPGIPGLPGEPG
YGKDGMPGPPGPQGEAGAPGLMGPPGPSGANGQCDPSQCAYFASLAARPSNVKGP
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccctctggaaagagagtgggtgcccttcatcctgattctccttacacttgtgtgg
ggtggagagagaattcaggcacaaagagcaggttgcaagaatgtccattacgaccttgtc
ttcctcctggatgcctcttccagcgtgggcaaagaagattttgagaaggtccgacagtgg
gtgtcaaacctggtggagacttttgagattggacaagataagacccgcgtgggagtggtc
cggtacagtgatcggccaaccacagaatttgacctaggaaggtaccaaactcgtgaggaa
atcaaagcagctgcaaagaacattaaatatgatgggggcaatacaaacaccggggatgcc
ctccggtacatcaacacctatagcttttccaaagaggctggtgggaggcctagtgaccgg
gccattaagaaagtggccatccttctgactgatgggaggagccaggattatgtcttgaac
ccagccactgcagcacgcaaggctgggattcgaatttttgcggtaggagtgggtgaagct
ttgaaggaggaactggatgaaattgcttctgagcccaagtctgctcacgtgttccacgtc
tctgattacaatgccattgataaaatacgagggaaactgagaagacgtctctgtgaaaat
gtgctatgcccaaatgtccacgtggaaggagatcggttcaaacacaccaatggagggact
gacgaaattccaggatttgacctggtggatttattcagcgtgaaggatatttttggactg
aaagacaatggaattcagagttcctatatccgacttggcagcttccccattgtgcagaaa
acagaggatgtcttcccacaaggcctgcctgatgaatatgcctttgtaacgaccttcaaa
ttccggaaagcttcccggagagaggactggtatatttggcagattatcgacaaatacggg
atacctcaggtttctatccggctggacggggacaacaaagctgtggagtacagtgccatc
gggctgaccaaggatgccgtgagagtggtctttcgaagcgcccgagtcagcgacctgttt
gaccgcaactggcataagatcgccctcagcatccagtccaagagcgtctccctctacata
gactgcaagctggtgcagacgctccctattgaagacagagaaaatatcgacattcaggga
aagactgtgattggcaaacggctttatgacagcgtacccatcgattttgatctacagcgc
atggtgatttactgtgattctcgacatgctgagttggaaacctgctgtgacattccctct
ggaccatgccaggtgacggttattacagaggcaccaccccctgaagtcagacccactgtt
ggcagcgaacaaatcggtcacataaagaccctcaactgttcttgtcctgctggagagaag
ggtgagaggggtccatttggccccgaaggtcctcaaggtcaaaagggagaaagtggcagc
cgagggcttcctggccaaaaaggagaaaaaggagagttggccagaggagcatatggagga
ggagaaaaaggagaaaagggtgaagaagggcccaggggcttttctggattgaagggtgaa
aaaggagaaaaggggtccctgggctcacctggcccccctgggagggaaggagcaaaagga
gaaaccggggagccaggacagctgggagaaattggactacctggtccagagggccctaag
ggatcagagggaaaaccaggcccaccgggaatcaaaggctatgtcggagcgcctggtctg
caaggagaaagaggagaaaaggggactcggggagacaagggagaacgaggctttgacggg
ttccctgggaagccaggcgtggagggaaaacagggtcccaagggcagctcaggcccacca
ggtgccattggacctacaggagaaaagggtgaaccagggctcccaggattaccaggctct
gcggtgcagaccgaaggcctaaagggagagcgaggagaccccggtcctcgaggaccacaa
ggtttacctggtctgccagggccaccggggccagctggtccagaaggcaagcacggagct
cctggtctgcaaggtcaaaggggcaagaagggtgacatgggggtctcgggagttgatggc
ctgcctggacctcagggtcctccggggcctcctggcagtgctggtccccgtggcattcct
ggtgctccaggattgcctggagaacttggcgtttcaggaaaacctgggcttccaggaccc
cctggcttgcctggcaaagatggattaaatggtctacctggacttctgggtcaaaaggga
gaacaaggagaaaagggacaggaaggctcttctggacaagctggtcccaagggtgacaca
ggggctcgtggcctgccgggtctatcaggcgaacagggtgaagcagggcttcctggactc
cagggcttacccggaccaagaggagagaaggggaaccagggtgaaacgggaagagaggga
ctccctggacagcaaggtgaaaagggcgatgtgggttctcctggtccccctggtctgcct
ggaactacagcactgttcaccccacatccccgaatcccaggagaacccggaccaaaagga
gagaaaggagatcaaggaatcggcggagaacctggaccagctggtgctcccggtgagcag
gggctcccagggcttgcaggactacagggcatgaagggacagaaaggagctagaggagaa
actggaactcctggcgagactggtgctcctggtgctgaaggccccccaggcccacgcggc
ttgccaggaaacgtgggtgtacctggagatgtgggtccaccaggaaaggatgggcaaaag
ggcgaaaagggtgagccagggagagatggaaaagcaggaggacctgggcctgctggtgag
cctggccctgctggagtacctggcttacctggcaagggtaaagatggagaccggggtgac
cgaggcctgcctggactgccgggactcattggtcacaagggagataggggagctcccggt
ctccctggccagcctggagacagaggtccgcctggaattggagtcgctgggcctcctggc
cccacgggaccaccaggagacaaagggacattgggctcccgaggctcacccggcgtccca
ggcccccaaggaccacccgggcaggatggtttacctggaaatccaggggaacggggacct
cctggaaagccgggtacttctcccttgcttactcctgaagacatcaacctcctagtcaag
gacgtgtgtacagactgcccacctggcccgccagggctcgcaggaataccaggcttcaag
ggtgataaaggtctgcgagggcctcctgggagagatggcctggatgggaaaacgggggct
actggtcccagaggtccaccaggccctccaggcccagatggtctaaagggcactaaagga
gaccgtggaacaacgggggaggctggagaaaaaggtgaacagggtcaccatggaatgcct
ggttttttgggcccacctggaaacccaggcccacctggaccagatggtgtaaaaggacca
gcaggagcccctgggatccctggagatattggtaaagatggcccaccaggacctcaggga
ccaccaggattgcctggacttcaaggcattgatgggaatgatggcaaggatggcaagcca
ggatctcctggggaacctggcaaatcaggagaaccagggcttccaggccaggagggtgcc
agagggttaccgggcttcaagggacaaagaggagacatgggtcccccaggctctcgggga
gagccaggtgtggcaggtcctgctgggcgtgagggaccaccagggaaggatggtgacgcc
ggcctcaccggacctcagggtcctcgcggattcagagggcagccgggcaagagtggatca
cctggtcccccaggggagcctgggcctgcaggaaacccaggtccaaaaggaaacaaagga
gaaaatggcagcccaggagttcctggtttcataggacctcgaggacctcctggtgaaccg
ggagagaaaggtcccccgggaaaagagggtgcagctgggaaaccaggtgaacatggatcc
aatggagacaagggagatcctggagtcaaaggtgacaaaggcccacagggggagaagggc
tcacctggcgagcctggaataccaggccataaaggccacccaggactgatgggtcctcaa
gggccaccaggagacaatggacaaactggacctccaggtcccccaggacagccaggattt
cctggtccacggggggagcctccatccttggaaactctgagaaggcttattcaggaggag
ttaggaaagcagctcgatgcaaaactagcctacctcatggctcagatgcagccagctcag
gtcaaagcccctcaaggtagaccagggcctccaggtgttcctggcaaggaaggactccca
ggaagacctggccctccgggagagcctggccgacctgggcaaacgggatctgaaggacca
ccagggcctgtgggtccaaaaggtgaaagaggcacgaatggtgaaaaaggagaagctggc
gttggtcagaggggtgaaataggttctccagggattccaggcctcccaggggaacctggc
tatggcaaagatgggatgccaggaccaccaggcccccaaggtgaagctggggcgcctggc
ctcatgggcccaccaggaccttctggagccaatggacagtgcgatccctctcagtgcgct
tactttgcaagtctggctgccaggcccagcaacgtcaagggaccctag
DBGET
integrated database retrieval system
