Alligator mississippiensis (American alligator): 102569054
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Entry
102569054 CDS
T03087
Symbol
CHD5
Name
(RefSeq) chromodomain helicase DNA binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102569054 (CHD5)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102569054 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102569054
NCBI-ProteinID:
XP_014461268
LinkDB
All DBs
Position
Un
AA seq
1918 aa
AA seq
DB search
MSENEEDMEDKSESEGSDYSPNKKKKKKLKEKKEKKAKRKKKDEEEEDNEDGGLKEPKSS
AQLMDEWGLDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWRE
FSANNPFKGSSAAAAAAAVAAAVETVAIAPPLSVSPPQAPPPPAIRKAKTKEGKGPGVRK
KIKGSKDGKKKGKGKKVAGLKFRFGGIANKRKKGSSSEEEEREESDLDSASINSSSVRSE
CSAGLGKRGKRRRKKKRTEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPEL
EKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGEEEEDDHMEFCRVCKDGGELLCCDTCP
SSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWTWKEPPVPPASLLSPPDSEM
AIPPSKSLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPAFD
YGSGDEDSKSEKRKNKDPQYAQMEEKYYRYGIKPEWMMIHRILNHSFDKKGDIHYLIKWK
DLPYDQCTWEIDDIDIPYYENLKQIYWNHRELMLGDETRPPKKLNKKGKKLKDEKLEKPP
ETPIVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT
IVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRAVIRENEF
SFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNN
QSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKED
QIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKG
GGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKK
LRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFC
FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE
ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGVMSQGQRI
TMPDALSPFPEAPASKGGAVAQNMKKKHGGTPPGDNKDVEDSSVIHYDDAAISKLLDRNQ
DATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHHYEQ
QQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGG
RRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWL
VRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRK
KVQEFEHVNGKYSTPDLILEGPDIKKPTEVVSSDPNTPVPASPAPLQMGSVALPDKIEMQ
LGFLEEKEQGEQKPGKLTESQVPAGAENVESEETHESAEHKEKTREEKAGENEKAESLPE
LPMKDKAIQEKEKPLEKSELNANQGKGEETEFKSEEAKVEEKEQNETQQNGEKEEEEDGK
KEDKNANFRFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGY
ARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLN
MTQDPSHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKA
DVTRLPSMLSRIPPVAARLQMSERSILSRLTTRGGDPTVQQGSFGSSQIYNNNFGPNFRG
PGPGGIVNYSQMPLGPYVTATPSGPPSSHPDKKVAESLKDGTSLEHKGKHGDVICIED
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatgaagaggacatggaagataagtcagagagtgaaggcagcgattactcc
cccaacaaaaagaagaagaaaaagctcaaggaaaagaaagagaaaaaagccaaacggaaa
aagaaagatgaggaggaggaagataacgaggacggaggactaaaggagcccaagagctca
gcccagctcatggacgaatggggcctggatgatgttgattatattttctcggaagaggac
taccacacgctgactaattacaaggcattcagtcagtttctcaggcccttaattgccaag
aagaaccccaagattcctatgtccaagatgatgacagttcttggtgccaaatggcgggag
ttcagtgccaacaacccgttcaagggcagttcagcagctgcagcagcagcagcagtggct
gcagcagtggagacagttgccattgcacccccgctctctgtcagccctccccaggctccc
ccacccccagctatcaggaaggccaagaccaaggaaggcaaaggtccaggagtgcggaag
aaaatcaaaggctccaaagatgggaagaaaaaggggaaaggcaaaaaggtagcaggcctg
aaatttcggtttggaggaattgccaacaaaaggaaaaagggctcctcaagtgaagaggaa
gagcgagaggaatctgacttggacagtgccagcatcaacagctcctcggtgcgctccgaa
tgctctgcaggcttgggcaagagagggaagaggaggagaaagaaaaagaggactgaagaa
ggggatgggtatgagactgaccaccaggactactgcgaggtctgccagcaaggaggagag
atcattctgtgtgacacgtgcccccgggcctaccaccttgtctgcctggatcctgaattg
gagaaagccccagagggcaagtggagctgcccacactgtgagaaggaagggatccagtgg
gagcccaaggatgatgatgaggaggaggaggaggggggtgaggaggaggaagatgaccac
atggagttctgccgcgtgtgtaaggatggtggagagctgttgtgctgtgacacctgccct
tcctcgtaccatctgcactgcctgaacccaccactgccagagatcccaaatggtgaatgg
ctctgcccgcgctgtacatgccctcccttaaaaggcaaagttcagcgcatcctacactgg
acttggaaggagccccctgtgcccccagcatccttgctgtccccacctgactcagagatg
gccatccctccatcaaaatcgctggaagggatcccagaaagggagttctttgtgaaatgg
gcagggctttcctactggcactgctcctgggtcaaggagctacagctggagctctaccac
accgtgatgtaccgcaactaccaaaggaagaatgacatggatgagccacctgcctttgac
tatggctctggggatgaggatagcaagagtgagaagcggaagaacaaagacccacagtat
gcccaaatggaggagaagtactaccgctatggcatcaagcctgagtggatgatgattcac
cgcatcctgaaccacagctttgataaaaagggagacatccattacctgatcaagtggaaa
gatttgccatatgaccagtgtacctgggagatcgatgatatagacattccatactatgaa
aacctgaagcagatatactggaatcacagggagctgatgttgggggacgaaacccgacct
ccaaagaagctgaacaagaaaggaaaaaaactgaaagatgagaaactggagaaaccacca
gaaacacccattgttgatcccacagttaagtttgacaagcaaccctggtacattgatgca
actggaggtaccctacatccctaccagctggaagggctgaactggctgaggttctcctgg
gcccagggcactgacacaatccttgctgatgaaatggggctggggaagaccgtgcagact
attgtattcctgtactccctctacaaggagggccactccaaaggaccatacctggtcagt
gcccctctctccaccatcatcaactgggagagagagtttgagatgtgggcccctgacttc
tatgttgtgacgtacacgggggacaaggaaagccgggcggtgatccgggagaatgagttc
tcctttgaggacaatgccatccggagtgggaagaaggttttccgaatgaagaaagaagcc
cagattaaattccatgtcctgcttacctcctatgagctgattacgattgatcaggctatc
ctggggtctattgagtgggcctgcctggtggtggatgaagcacacagattgaagaacaac
cagtccaaattcttcagagtgctgaatagctacaagatcgactacaagctactgctcaca
ggcacaccactccagaacaacttagaggagctcttccaccttctcaactttcttaccccg
gagaggttcaacaacctagaggggttcctggaggaatttgctgacatctcgaaggaggac
cagatcaagaagctgcatgacctcctgggtccccacatgctccggagactgaaggcagat
gtgttcaagaacatgcctgccaagactgagctgattgtgagggtggagctcagccagatg
caaaagaagtactacaaattcatattgacaaggaattttgaagccctgaattccaaaggt
ggtgggaaccaagtgtcactgctcaatatcatgatggatctgaagaaatgctgcaaccat
ccatacctcttccctgttgctgctgtggaagctccagtcttgccaaatgggtcctatgat
ggcaattcattggttaaatcttctggaaagctgatgttgctgcagaagatgttgaagaag
ctgcgagatggggggcacagagtcttgatcttctcccagatgacaaagatgctggatctg
ctggaggatttcttggagtatgagggttacaagtatgagagaatcgatggaggcatcacg
gggggcctgcgccaggaagctattgacagatttaatgctcctggtgctcagcagttctgc
tttctcctctctacccgagctggtggtttgggcataaaccttgctacggccgacacagtc
attatttatgattctgattggaatccccacaatgacatccaggcattcagccgagcccat
cgtattgggcagaataagaaggtgatgatctaccgctttgtgacaagagcctctgtggag
gagcgcatcacccaggtagccaagcggaaaatgatgctcacccacttggtggtccgtcca
ggccttggctccaagtctggctccatgaccaagcaggagctggatgacatcctgaagttt
gggactgaagagctcttcaaagatgatgtggaaggcgtgatgtctcagggccagcggatc
accatgccagatgctctctctcccttcccagaagccccagcctctaaagggggtgctgtg
gctcaaaacatgaaaaaaaaacatggcggcaccccaccaggggacaacaaggatgtggag
gacagcagcgtgatccactacgatgatgctgccatctccaagctgctggaccggaaccag
gatgcaactgatgacactgagttgcagaacatgaacgagtatctcagctcctttaaagtg
gcccagtatgttgtgagagaagaggatggtgtggaggaggttgaacgagagatcatcaag
caggaggagaatgtggaccctgactactgggagaagctgctgcggcaccactatgagcag
cagcaggaggatctggccaggaaccttgggaaggggaagcggatccgcaagcaggtcaac
tacaatgacacttcacaggaggaccaagagtggcaggatgagctctctgataaccagtcg
gagtactccattggctctgaggatgaagatgaagactttgaggagagacctgaaggtggc
agacgacagtcacggagacagctgaagagtgaccgagacaagcctttgccacctctgctg
gcaagagtcggagggaatattgaggtcctaggcttcaatgcccggcagcgcaaggccttc
ctgaatgccataatgcggtggggaatgccacctcaagatgccttcaattcgcactggttg
gttcgggacctgcgtgggaaaagcgagaaggagttcagggcgtacgtttcattattcatg
aggcacttgtgtgagccaggagcagatggggccgagacgtttgcagacggcgttccccgg
gaggggctgtcacgtcaacatgtgctgacgaggattggagtgatgtcacttgtgaggaag
aaggtccaggagtttgagcatgtgaatgggaaatacagcactccagacttgatcttggag
ggcccggacatcaagaaacccactgaggtggtttcttctgatcccaacactcctgtccct
gccagtccagcaccactgcagatggggtctgtggccctgcctgacaagatagaaatgcag
ctggggttcctggaggagaaggagcagggggaacagaagcctgggaagctgactgagagc
caggtgccagcaggggcggagaatgtcgagagcgaggagacccatgagagcgctgagcac
aaagagaagacacgagaagagaaagcaggagagaatgaaaaggctgagtctttgcctgag
ttgcccatgaaagacaaggcaattcaagaaaaagaaaagccactggagaaatctgagtta
aatgccaatcaagggaaaggggaggagacagaattcaagtcagaggaggccaaggttgag
gagaaggagcaaaatgagactcaacaaaatggtgaaaaggaggaggaagaagatgggaag
aaggaggacaaaaatgcaaacttcagattcatgttcaacattgctgatggcggctttaca
gagttgcacacgttgtggcagaatgaggagagagccgcagtctcctctggcaagatttat
gacatctggcaccggagacatgactactggcttctggcaggaattgtcactcatggctat
gcccgctggcaagacatccaaaatgacccacgctatgtgattctgaatgagcctttcaag
tcagagatccacaaggggaactaccttgagatgaagaacaagttcctcgcacgccggttc
aaattgctggagcaggcactggtgatcgaggagcagctgcgaagggccgcatacctcaac
atgacccaagaccccagtcacccggccatggcactgaacgcccgtctggctgaagtggag
tgccttgctgaaagtcaccagcatctctccaaagaatcccttgctgggaacaagcctgcc
aatgctgtcctgcacaaagttctgaaccagctggaggagctgctgagtgacatgaaggca
gatgtgacacgcctgccctccatgctgtcccggataccacctgtggctgcccgcctgcag
atgtctgaacggagcattctgagccgcctgacaacccggggaggtgaccccaccgtccag
cagggctcctttgggtcctcccagatctacaacaacaactttgggcctaatttccgaggt
ccaggaccaggtggaattgtcaactacagtcagatgcctctgggaccatatgtgactgcg
acccccagtgggccaccctccagccaccctgataaaaaagtagcagagtcactgaaggat
ggcacgtccttggagcacaaggggaagcatggtgatgtcatctgcattgaagactaa
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