Alligator mississippiensis (American alligator): 102569238
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Entry
102569238 CDS
T03087
Symbol
SCAF4
Name
(RefSeq) SR-related CTD associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102569238 (SCAF4)
03041 Spliceosome [BR:
amj03041
]
102569238 (SCAF4)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102569238 (SCAF4)
Spliceosome [BR:
amj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
102569238 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102569238
NCBI-ProteinID:
XP_014454521
LinkDB
All DBs
Position
Un
AA seq
1089 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSSTAPMAENTSNNEGSPPPPAKVPSEPPQVTANSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPVIDNTVMAHVQAITAQLKTTATQP
PEQKAAFPPPEQKTSFDKKLLDRFDYDDEPEAVDDSKKEDTAPSPSISQPAFGFPGEGMP
PPVYPQLPNIDPFQQRMMGMQQDPIRHQVPLPPNGQMPSFGLLPTPQFPPMAQPVIPPTP
PVQQTFQTPFPVQSEPPHMQKTHQQEMEVEQPPVQEGKRHVSDNRKSRSRSASRSPKRRR
SRSGSRSRRSRHRRSRSRSRDRRRHSPKSRSQERRERERERERRSKGLPQIKPETVSVCS
TTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGN
FKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDLESFCEGGMLDNETLS
PEWKGIPKKSENEVAQNGGAETTHTEPVSPIPKALPVPIPVPMPAPITVPPPQVPPHPSG
PPVVGALQPPAFTAPMGIPPPGFAPGVPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITP
PVSVPVSVPHTPPVNIPNSTATGVSEDTTKDASVGNPIPTVVSGSRGNSETSDSSKMYAT
VPPPVAPTNVPAPASQPMPAPVSQPVPLLGTQGVAPPPAPVVGLQTPSTGLLGARPGLIP
LQRPPGIPPPPLQRFPLMPPRHMPPHMLHRGPPPGPGGFGMPPPHGMKNPFPPPGPFVRP
GGGMSGSGGSGGPEDNRDGRQFRNDRQTFGSNRDQERYGRRSFGNRVENDRERYGNRNDD
RDHERLGNRERREWGRRSPERDRHRDLEDRNRRSSGHRDRERDSRDRESRRDKEENRGKE
KPELTDRADGDNNHESHSGKVENADIVSELTTGASEPTGVKPNEVLTSEATSSVEQAAKD
IGSVVEAPR
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaacgccttcaaccaggagctcttttcactcatggaaatgaaaccacct
atttcccgagcaaagatgattctcattactaaagctgccattaaagctattaagctctac
aagcatgtagttcagattgtagagaaatttatcaaaaagtgcaaaccagaatacaaagtt
cctggattgtacgttattgactctattgttcgtcagtctcgtcaccagtttggaacagat
aaggatgtttttgggccaagattctctaaaaatataaccgccacattccagtatttatat
ctctgtccatctgaagacaagagtaagatagttcgtgttctgaacctttggcagaaaaat
ggagtgtttaaaatagagatcattcagcctcttctggatatggcagcaggaactagtagt
acagccccaatggcagaaaatacctctaataatgaaggttcaccaccccctccagcaaag
gttccctctgagccacctcaggttactgctaattcagtacctactgtgccacagttgccc
agttctgatgcctttgctgctgtagcccagttgtttcagacaactcaaggacagcagctt
cagcagattcttcagacttttcagcaacctccaaaaccccagtctccagtcatagacaac
actgtcatggcacatgttcaggctattactgctcagttgaaaactacagcaacgcaacca
ccagagcaaaaagctgcttttcccccacctgagcaaaaaacatcttttgataagaagctg
ctagatcgttttgactatgacgatgaaccggaagcagtggatgactcaaaaaaagaagat
acagcaccttctccttccatttcccaaccagcctttggatttccaggagaaggtatgcca
ccaccagtatatccacaactcccaaatatagatccatttcaacagcgaatgatgggaatg
caacaggatccaatacgccaccaggttccacttcctcccaatggacaaatgccaagtttt
ggacttctgcctacaccacagtttcctcctatggctcagcctgtaatacccccaacacca
cctgtgcagcaaacttttcagactccttttccagtacaaagcgagccaccacacatgcag
aaaacacatcagcaggaaatggaagtggaacagccccctgttcaagaaggaaagcgacat
gtttctgataacagaaagtcaagatctagatctgcttcaagatcgcccaagagaagacga
tcaagatctggatctcggtctcgacggtcacgtcatcgtcgttctcgctcccgatctcgg
gataggcgccggcactctccaaagtctcgatctcaggagagacgtgaacgagagagggag
agagaacgcaggtcaaaaggccttcctcagatcaagccagaaactgttagtgtttgtagt
actacactttgggtaggacaactggacaaaagaacaactcaacaagatgttggaagtctt
ttggaggagtttggcccaattgaatctataaacatgataccacctagaggatgtgcctat
attgtaatggttcacagacaagatgcttatcgcgccctacaaaaattgagccgaggcaac
ttcaaagtcaatcagaaatctataaagatcgcatgggctttaaataaaggaattaaacca
gattataaacagtattgggatgtagaattaggtgttacctatattccctgggacaaagtt
aagcctgaagatcttgaaagtttctgtgaaggaggaatgttggataatgaaacgcttagt
ccagagtggaaaggaattcccaagaaatctgagaatgaagttgctcaaaatggaggtgca
gaaaccacacatactgagccagtgtcaccaatacctaaagctttacctgttccaattcct
gttcccatgcctgcaccaataactgtgcctcctccacaggttccgccacacccatccggc
cctcctgtagttggtgcgctccagccacctgctttcactgctccaatgggaatcccgcct
cctggatttgcccctggggttcctcccccaccaccacctccatttttacgacctggattc
aacccaatgcatttgccaccaggttttcttcctcctgggccaccaccacctataacccct
ccagtttctgttcccgtatctgttcctcacactccgcctgtaaacatcccaaactctact
gcgactggtgtaagtgaagacactacaaaggatgcatctgttggaaatcctattccaaca
gtggtttctggatctagaggaaattctgaaactagtgacagttccaaaatgtatgcaact
gttcctccaccagtagcaccgactaatgtacctgctcctgccagtcaacctatgcctgct
cctgtcagccaacctgtgccacttctgggtactcaaggagttgcaccaccacctgctcct
gtggttggattacagaccccctctactggactccttggggcacggcctggtttaatacca
ctccagcgacctcctggaataccaccaccacctctgcaacgctttcccttgatgccacca
cggcatatgcctccccatatgttacacagaggtccaccccctgggccagggggctttggc
atgcctccccctcatggaatgaaaaacccatttccaccacctggcccctttgttaggccg
ggcggagggatgtcaggaagtggaggatcaggtggacctgaggataatagagatggaagg
cagtttaggaatgataggcagacattcggttctaatagagaccaggaaaggtatggaagg
aggtcttttggaaatcgggtagaaaatgatcgtgagcgctatggtaaccgcaatgatgac
agggatcatgagcgacttggtaatcgtgaaaggagagaatggggaagaagaagccctgaa
cgcgatagacacagagacttagaagacagaaatcgacggtccagtggacaccgagacaga
gagagagattctagagatagggaatctcgtagagacaaggaagaaaatcgaggaaaggag
aaacctgagctgacagacagggcagatggtgacaacaaccatgaatctcacagtggcaaa
gtggaaaatgcagacattgtttcagaacttactacgggagcatctgaacccacaggtgta
aaacctaatgaagtgttaacatctgaggctacctcatctgttgaacaagctgcaaaggat
attggctcagttgtagaggctcctcgttag
DBGET
integrated database retrieval system
